data_2AST # _model_server_result.job_id lS7-KXudqvL18sDupPaZCg _model_server_result.datetime_utc '2024-11-07 21:55:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ast # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 2AST # _exptl.entry_id 2AST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AST _cell.length_a 148.7 _cell.length_b 148.7 _cell.length_c 98.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AST _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,B,E,G,H 3 1,2 C,D,F,I 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 65.866667 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 74.35 -128.777978 32.933333 4 'crystal symmetry operation' 5_545 x-y,-y-1,-z+1/3 1 0 0 0 -1 0 0 0 -1 74.35 -128.777978 32.933333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C GLN 6 D GLN 4186 1_555 D N TPO 7 D TPO 4187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 D C TPO 7 D TPO 4187 1_555 D N PRO 8 D PRO 4188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 2AST _atom_sites.fract_transf_matrix[1][1] 0.006725 _atom_sites.fract_transf_matrix[1][2] 0.003883 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BEN B 1 1002 2 BEN BAM . F 5 BEN C 1 1001 1 BEN BAM . G 6 HOH A 1 83 83 HOH HOH . G 6 HOH A 2 176 176 HOH HOH . G 6 HOH A 3 177 177 HOH HOH . G 6 HOH A 4 178 178 HOH HOH . G 6 HOH A 5 179 179 HOH HOH . G 6 HOH A 6 200 200 HOH HOH . G 6 HOH A 7 236 236 HOH HOH . G 6 HOH A 8 262 262 HOH HOH . H 6 HOH B 1 2 2 HOH HOH . H 6 HOH B 2 3 3 HOH HOH . H 6 HOH B 3 4 4 HOH HOH . H 6 HOH B 4 5 5 HOH HOH . H 6 HOH B 5 7 7 HOH HOH . H 6 HOH B 6 8 8 HOH HOH . H 6 HOH B 7 9 9 HOH HOH . H 6 HOH B 8 10 10 HOH HOH . H 6 HOH B 9 11 11 HOH HOH . H 6 HOH B 10 13 13 HOH HOH . H 6 HOH B 11 14 14 HOH HOH . H 6 HOH B 12 18 18 HOH HOH . H 6 HOH B 13 19 19 HOH HOH . H 6 HOH B 14 20 20 HOH HOH . H 6 HOH B 15 21 21 HOH HOH . H 6 HOH B 16 23 23 HOH HOH . H 6 HOH B 17 24 24 HOH HOH . H 6 HOH B 18 25 25 HOH HOH . H 6 HOH B 19 26 26 HOH HOH . H 6 HOH B 20 28 28 HOH HOH . H 6 HOH B 21 30 30 HOH HOH . H 6 HOH B 22 31 31 HOH HOH . H 6 HOH B 23 32 32 HOH HOH . H 6 HOH B 24 33 33 HOH HOH . H 6 HOH B 25 34 34 HOH HOH . H 6 HOH B 26 35 35 HOH HOH . H 6 HOH B 27 37 37 HOH HOH . H 6 HOH B 28 39 39 HOH HOH . H 6 HOH B 29 40 40 HOH HOH . H 6 HOH B 30 41 41 HOH HOH . H 6 HOH B 31 42 42 HOH HOH . H 6 HOH B 32 44 44 HOH HOH . H 6 HOH B 33 46 46 HOH HOH . H 6 HOH B 34 47 47 HOH HOH . H 6 HOH B 35 48 48 HOH HOH . H 6 HOH B 36 49 49 HOH HOH . H 6 HOH B 37 50 50 HOH HOH . H 6 HOH B 38 55 55 HOH HOH . H 6 HOH B 39 56 56 HOH HOH . H 6 HOH B 40 57 57 HOH HOH . H 6 HOH B 41 58 58 HOH HOH . H 6 HOH B 42 59 59 HOH HOH . H 6 HOH B 43 61 61 HOH HOH . H 6 HOH B 44 62 62 HOH HOH . H 6 HOH B 45 63 63 HOH HOH . H 6 HOH B 46 64 64 HOH HOH . H 6 HOH B 47 65 65 HOH HOH . H 6 HOH B 48 66 66 HOH HOH . H 6 HOH B 49 67 67 HOH HOH . H 6 HOH B 50 68 68 HOH HOH . H 6 HOH B 51 69 69 HOH HOH . H 6 HOH B 52 70 70 HOH HOH . H 6 HOH B 53 71 71 HOH HOH . H 6 HOH B 54 72 72 HOH HOH . H 6 HOH B 55 73 73 HOH HOH . H 6 HOH B 56 74 74 HOH HOH . H 6 HOH B 57 75 75 HOH HOH . H 6 HOH B 58 76 76 HOH HOH . H 6 HOH B 59 77 77 HOH HOH . H 6 HOH B 60 78 78 HOH HOH . H 6 HOH B 61 79 79 HOH HOH . H 6 HOH B 62 80 80 HOH HOH . H 6 HOH B 63 81 81 HOH HOH . H 6 HOH B 64 82 82 HOH HOH . H 6 HOH B 65 84 84 HOH HOH . H 6 HOH B 66 85 85 HOH HOH . H 6 HOH B 67 86 86 HOH HOH . H 6 HOH B 68 87 87 HOH HOH . H 6 HOH B 69 88 88 HOH HOH . H 6 HOH B 70 89 89 HOH HOH . H 6 HOH B 71 90 90 HOH HOH . H 6 HOH B 72 91 91 HOH HOH . H 6 HOH B 73 92 92 HOH HOH . H 6 HOH B 74 93 93 HOH HOH . H 6 HOH B 75 94 94 HOH HOH . H 6 HOH B 76 95 95 HOH HOH . H 6 HOH B 77 96 96 HOH HOH . H 6 HOH B 78 98 98 HOH HOH . H 6 HOH B 79 101 101 HOH HOH . H 6 HOH B 80 102 102 HOH HOH . H 6 HOH B 81 103 103 HOH HOH . H 6 HOH B 82 104 104 HOH HOH . H 6 HOH B 83 105 105 HOH HOH . H 6 HOH B 84 106 106 HOH HOH . H 6 HOH B 85 107 107 HOH HOH . H 6 HOH B 86 108 108 HOH HOH . H 6 HOH B 87 109 109 HOH HOH . H 6 HOH B 88 110 110 HOH HOH . H 6 HOH B 89 111 111 HOH HOH . H 6 HOH B 90 112 112 HOH HOH . H 6 HOH B 91 114 114 HOH HOH . H 6 HOH B 92 115 115 HOH HOH . H 6 HOH B 93 116 116 HOH HOH . H 6 HOH B 94 117 117 HOH HOH . H 6 HOH B 95 118 118 HOH HOH . H 6 HOH B 96 119 119 HOH HOH . H 6 HOH B 97 120 120 HOH HOH . H 6 HOH B 98 121 121 HOH HOH . H 6 HOH B 99 122 122 HOH HOH . H 6 HOH B 100 123 123 HOH HOH . H 6 HOH B 101 124 124 HOH HOH . H 6 HOH B 102 125 125 HOH HOH . H 6 HOH B 103 126 126 HOH HOH . H 6 HOH B 104 127 127 HOH HOH . H 6 HOH B 105 128 128 HOH HOH . H 6 HOH B 106 131 131 HOH HOH . H 6 HOH B 107 132 132 HOH HOH . H 6 HOH B 108 133 133 HOH HOH . H 6 HOH B 109 134 134 HOH HOH . H 6 HOH B 110 135 135 HOH HOH . H 6 HOH B 111 136 136 HOH HOH . H 6 HOH B 112 137 137 HOH HOH . H 6 HOH B 113 138 138 HOH HOH . H 6 HOH B 114 139 139 HOH HOH . H 6 HOH B 115 140 140 HOH HOH . H 6 HOH B 116 141 141 HOH HOH . H 6 HOH B 117 142 142 HOH HOH . H 6 HOH B 118 143 143 HOH HOH . H 6 HOH B 119 144 144 HOH HOH . H 6 HOH B 120 145 145 HOH HOH . H 6 HOH B 121 146 146 HOH HOH . H 6 HOH B 122 147 147 HOH HOH . H 6 HOH B 123 148 148 HOH HOH . H 6 HOH B 124 149 149 HOH HOH . H 6 HOH B 125 150 150 HOH HOH . H 6 HOH B 126 151 151 HOH HOH . H 6 HOH B 127 152 152 HOH HOH . H 6 HOH B 128 153 153 HOH HOH . H 6 HOH B 129 154 154 HOH HOH . H 6 HOH B 130 155 155 HOH HOH . H 6 HOH B 131 156 156 HOH HOH . H 6 HOH B 132 157 157 HOH HOH . H 6 HOH B 133 158 158 HOH HOH . H 6 HOH B 134 159 159 HOH HOH . H 6 HOH B 135 160 160 HOH HOH . H 6 HOH B 136 161 161 HOH HOH . H 6 HOH B 137 162 162 HOH HOH . H 6 HOH B 138 163 163 HOH HOH . H 6 HOH B 139 164 164 HOH HOH . H 6 HOH B 140 165 165 HOH HOH . H 6 HOH B 141 181 181 HOH HOH . H 6 HOH B 142 183 183 HOH HOH . H 6 HOH B 143 185 185 HOH HOH . H 6 HOH B 144 186 186 HOH HOH . H 6 HOH B 145 188 188 HOH HOH . H 6 HOH B 146 191 191 HOH HOH . H 6 HOH B 147 192 192 HOH HOH . H 6 HOH B 148 194 194 HOH HOH . H 6 HOH B 149 195 195 HOH HOH . H 6 HOH B 150 196 196 HOH HOH . H 6 HOH B 151 197 197 HOH HOH . H 6 HOH B 152 198 198 HOH HOH . H 6 HOH B 153 199 199 HOH HOH . H 6 HOH B 154 201 201 HOH HOH . H 6 HOH B 155 202 202 HOH HOH . H 6 HOH B 156 204 204 HOH HOH . H 6 HOH B 157 205 205 HOH HOH . H 6 HOH B 158 207 207 HOH HOH . H 6 HOH B 159 208 208 HOH HOH . H 6 HOH B 160 211 211 HOH HOH . H 6 HOH B 161 212 212 HOH HOH . H 6 HOH B 162 213 213 HOH HOH . H 6 HOH B 163 214 214 HOH HOH . H 6 HOH B 164 215 215 HOH HOH . H 6 HOH B 165 216 216 HOH HOH . H 6 HOH B 166 217 217 HOH HOH . H 6 HOH B 167 218 218 HOH HOH . H 6 HOH B 168 221 221 HOH HOH . H 6 HOH B 169 222 222 HOH HOH . H 6 HOH B 170 223 223 HOH HOH . H 6 HOH B 171 225 225 HOH HOH . H 6 HOH B 172 226 226 HOH HOH . H 6 HOH B 173 228 228 HOH HOH . H 6 HOH B 174 229 229 HOH HOH . H 6 HOH B 175 231 231 HOH HOH . H 6 HOH B 176 232 232 HOH HOH . H 6 HOH B 177 233 233 HOH HOH . H 6 HOH B 178 234 234 HOH HOH . H 6 HOH B 179 237 237 HOH HOH . H 6 HOH B 180 238 238 HOH HOH . H 6 HOH B 181 239 239 HOH HOH . H 6 HOH B 182 240 240 HOH HOH . H 6 HOH B 183 241 241 HOH HOH . H 6 HOH B 184 242 242 HOH HOH . H 6 HOH B 185 243 243 HOH HOH . H 6 HOH B 186 244 244 HOH HOH . H 6 HOH B 187 245 245 HOH HOH . H 6 HOH B 188 246 246 HOH HOH . H 6 HOH B 189 251 251 HOH HOH . H 6 HOH B 190 252 252 HOH HOH . H 6 HOH B 191 253 253 HOH HOH . H 6 HOH B 192 254 254 HOH HOH . H 6 HOH B 193 255 255 HOH HOH . H 6 HOH B 194 256 256 HOH HOH . H 6 HOH B 195 257 257 HOH HOH . H 6 HOH B 196 258 258 HOH HOH . H 6 HOH B 197 259 259 HOH HOH . H 6 HOH B 198 260 260 HOH HOH . H 6 HOH B 199 261 261 HOH HOH . H 6 HOH B 200 263 263 HOH HOH . H 6 HOH B 201 264 264 HOH HOH . H 6 HOH B 202 265 265 HOH HOH . I 6 HOH C 1 1 1 HOH HOH . I 6 HOH C 2 6 6 HOH HOH . I 6 HOH C 3 12 12 HOH HOH . I 6 HOH C 4 15 15 HOH HOH . I 6 HOH C 5 16 16 HOH HOH . I 6 HOH C 6 17 17 HOH HOH . I 6 HOH C 7 22 22 HOH HOH . I 6 HOH C 8 27 27 HOH HOH . I 6 HOH C 9 29 29 HOH HOH . I 6 HOH C 10 36 36 HOH HOH . I 6 HOH C 11 38 38 HOH HOH . I 6 HOH C 12 43 43 HOH HOH . I 6 HOH C 13 45 45 HOH HOH . I 6 HOH C 14 51 51 HOH HOH . I 6 HOH C 15 52 52 HOH HOH . I 6 HOH C 16 53 53 HOH HOH . I 6 HOH C 17 54 54 HOH HOH . I 6 HOH C 18 60 60 HOH HOH . I 6 HOH C 19 97 97 HOH HOH . I 6 HOH C 20 99 99 HOH HOH . I 6 HOH C 21 100 100 HOH HOH . I 6 HOH C 22 113 113 HOH HOH . I 6 HOH C 23 129 129 HOH HOH . I 6 HOH C 24 130 130 HOH HOH . I 6 HOH C 25 166 166 HOH HOH . I 6 HOH C 26 167 167 HOH HOH . I 6 HOH C 27 168 168 HOH HOH . I 6 HOH C 28 169 169 HOH HOH . I 6 HOH C 29 170 170 HOH HOH . I 6 HOH C 30 171 171 HOH HOH . I 6 HOH C 31 172 172 HOH HOH . I 6 HOH C 32 173 173 HOH HOH . I 6 HOH C 33 174 174 HOH HOH . I 6 HOH C 34 175 175 HOH HOH . I 6 HOH C 35 180 180 HOH HOH . I 6 HOH C 36 182 182 HOH HOH . I 6 HOH C 37 184 184 HOH HOH . I 6 HOH C 38 187 187 HOH HOH . I 6 HOH C 39 189 189 HOH HOH . I 6 HOH C 40 190 190 HOH HOH . I 6 HOH C 41 193 193 HOH HOH . I 6 HOH C 42 203 203 HOH HOH . I 6 HOH C 43 206 206 HOH HOH . I 6 HOH C 44 209 209 HOH HOH . I 6 HOH C 45 210 210 HOH HOH . I 6 HOH C 46 219 219 HOH HOH . I 6 HOH C 47 220 220 HOH HOH . I 6 HOH C 48 224 224 HOH HOH . I 6 HOH C 49 227 227 HOH HOH . I 6 HOH C 50 230 230 HOH HOH . I 6 HOH C 51 235 235 HOH HOH . I 6 HOH C 52 247 247 HOH HOH . I 6 HOH C 53 248 248 HOH HOH . I 6 HOH C 54 249 249 HOH HOH . I 6 HOH C 55 250 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . F 5 5.647 -82.511 17.129 1 48.5 ? C1 BEN 1001 C 1 HETATM 2 C C2 BEN . . . F 5 6.249 -83.159 18.216 1 45.4 ? C2 BEN 1001 C 1 HETATM 3 C C3 BEN . . . F 5 5.841 -82.888 19.521 1 43.86 ? C3 BEN 1001 C 1 HETATM 4 C C4 BEN . . . F 5 4.826 -81.954 19.739 1 49.02 ? C4 BEN 1001 C 1 HETATM 5 C C5 BEN . . . F 5 4.222 -81.301 18.66 1 50.06 ? C5 BEN 1001 C 1 HETATM 6 C C6 BEN . . . F 5 4.633 -81.577 17.352 1 49.49 ? C6 BEN 1001 C 1 HETATM 7 C C BEN . . . F 5 6.088 -82.831 15.723 1 50.7 ? C BEN 1001 C 1 HETATM 8 N N1 BEN . . . F 5 6.773 -83.873 15.499 1 50.85 ? N1 BEN 1001 C 1 HETATM 9 N N2 BEN . . . F 5 5.744 -82.034 14.705 1 50.54 ? N2 BEN 1001 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 9 #