data_2AT9 # _model_server_result.job_id KeCz8WT3mv7EUp_yLlnZ-Q _model_server_result.datetime_utc '2024-12-26 15:15:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2at9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":249}' # _entry.id 2AT9 # _exptl.entry_id 2AT9 _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AT9 _cell.length_a 62.45 _cell.length_b 62.45 _cell.length_c 100 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 249 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code A _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.343 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 416 n n C1 C6 RET sing 417 n n C1 C16 RET sing 418 n n C1 C17 RET sing 419 n n C2 C3 RET sing 420 n n C2 H21 RET sing 421 n n C2 H22 RET sing 422 n n C3 C4 RET sing 423 n n C3 H31 RET sing 424 n n C3 H32 RET sing 425 n n C4 C5 RET sing 426 n n C4 H41 RET sing 427 n n C4 H42 RET sing 428 n n C5 C6 RET doub 429 n n C5 C18 RET sing 430 n n C6 C7 RET sing 431 n n C7 C8 RET doub 432 e n C7 H7 RET sing 433 n n C8 C9 RET sing 434 n n C8 H8 RET sing 435 n n C9 C10 RET doub 436 e n C9 C19 RET sing 437 n n C10 C11 RET sing 438 n n C10 H10 RET sing 439 n n C11 C12 RET doub 440 e n C11 H11 RET sing 441 n n C12 C13 RET sing 442 n n C12 H12 RET sing 443 n n C13 C14 RET doub 444 e n C13 C20 RET sing 445 n n C14 C15 RET sing 446 n n C14 H14 RET sing 447 n n C15 O1 RET doub 448 n n C15 H15 RET sing 449 n n C16 H161 RET sing 450 n n C16 H162 RET sing 451 n n C16 H163 RET sing 452 n n C17 H171 RET sing 453 n n C17 H172 RET sing 454 n n C17 H173 RET sing 455 n n C18 H181 RET sing 456 n n C18 H182 RET sing 457 n n C18 H183 RET sing 458 n n C19 H191 RET sing 459 n n C19 H192 RET sing 460 n n C19 H193 RET sing 461 n n C20 H201 RET sing 462 n n C20 H202 RET sing 463 n n C20 H203 RET sing 464 n n # _atom_sites.entry_id 2AT9 _atom_sites.fract_transf_matrix[1][1] 0.016013 _atom_sites.fract_transf_matrix[1][2] 0.009245 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 249 216 RET RET A C 3 2DP A 1 261 261 2DP 2DP . D 3 2DP A 1 262 262 2DP 2DP . E 3 2DP A 1 263 263 2DP 2DP . F 3 2DP A 1 264 264 2DP 2DP . G 3 2DP A 1 265 265 2DP 2DP . H 3 2DP A 1 267 267 2DP 2DP . I 3 2DP A 1 268 268 2DP 2DP . J 3 2DP A 1 269 269 2DP 2DP . K 4 HOH A 1 270 1 HOH HOH . K 4 HOH A 2 271 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . A B 2 15.058 9.967 -3.477 1 5.21 ? C1 RET 249 A 1 HETATM 2 C C2 RET . . A B 2 14.337 10.668 -4.621 1 5.79 ? C2 RET 249 A 1 HETATM 3 C C3 RET . . A B 2 14.687 12.11 -4.825 1 4.59 ? C3 RET 249 A 1 HETATM 4 C C4 RET . . A B 2 14.602 12.963 -3.578 1 2 ? C4 RET 249 A 1 HETATM 5 C C5 RET . . A B 2 15.028 12.241 -2.321 1 5.82 ? C5 RET 249 A 1 HETATM 6 C C6 RET . . A B 2 15.272 10.91 -2.258 1 3.53 ? C6 RET 249 A 1 HETATM 7 C C7 RET . . A B 2 15.759 10.3 -1.01 1 2 ? C7 RET 249 A 1 HETATM 8 C C8 RET . . A B 2 15.984 9.013 -0.728 1 2 ? C8 RET 249 A 1 HETATM 9 C C9 RET . . A B 2 16.445 8.386 0.49 1 3.7 ? C9 RET 249 A 1 HETATM 10 C C10 RET . . A B 2 16.55 7.051 0.453 1 5 ? C10 RET 249 A 1 HETATM 11 C C11 RET . . A B 2 16.959 6.137 1.496 1 5.69 ? C11 RET 249 A 1 HETATM 12 C C12 RET . . A B 2 17.038 4.8 1.365 1 3.96 ? C12 RET 249 A 1 HETATM 13 C C13 RET . . A B 2 17.421 3.814 2.353 1 5.23 ? C13 RET 249 A 1 HETATM 14 C C14 RET . . A B 2 17.403 2.52 1.958 1 6.72 ? C14 RET 249 A 1 HETATM 15 C C15 RET . . A B 2 17.725 1.312 2.708 1 6.35 ? C15 RET 249 A 1 HETATM 16 C C16 RET . . A B 2 14.193 8.763 -3.127 1 2.17 ? C16 RET 249 A 1 HETATM 17 C C17 RET . . A B 2 16.406 9.49 -3.981 1 8.33 ? C17 RET 249 A 1 HETATM 18 C C18 RET . . A B 2 15.17 13.209 -1.168 1 9.8 ? C18 RET 249 A 1 HETATM 19 C C19 RET . . A B 2 16.76 9.238 1.697 1 2.88 ? C19 RET 249 A 1 HETATM 20 C C20 RET . . A B 2 17.793 4.275 3.744 1 3.99 ? C20 RET 249 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #