data_2ATK # _model_server_result.job_id h-b8-jLlJExqkrgQ4MxXDA _model_server_result.datetime_utc '2024-12-21 14:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2atk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 2ATK # _exptl.entry_id 2ATK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.254 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NONAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ATK _cell.length_a 155.16 _cell.length_b 155.16 _cell.length_c 75.712 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ATK _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 C O THR 75 C THR 75 1_555 F K K . C K 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc2 C O THR 75 C THR 75 4_575 F K K . C K 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc3 C O THR 75 C THR 75 3_755 F K K . C K 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc4 C O THR 75 C THR 75 2_775 F K K . C K 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc5 C OG1 THR 75 C THR 75 1_555 G K K . C K 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc6 C OG1 THR 75 C THR 75 4_575 G K K . C K 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc7 C OG1 THR 75 C THR 75 3_755 G K K . C K 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc8 C OG1 THR 75 C THR 75 2_775 G K K . C K 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.158 ? metalc ? metalc9 C O GLY 77 C GLY 77 1_555 D K K . C K 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc10 C O GLY 77 C GLY 77 4_575 D K K . C K 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc11 C O GLY 77 C GLY 77 3_755 D K K . C K 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc12 C O GLY 77 C GLY 77 2_775 D K K . C K 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc13 C N GLY 77 C GLY 77 1_555 E K K . C K 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.478 ? metalc ? metalc14 C N GLY 77 C GLY 77 4_575 E K K . C K 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.479 ? metalc ? metalc15 C N GLY 77 C GLY 77 3_755 E K K . C K 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.479 ? metalc ? metalc16 C N GLY 77 C GLY 77 2_775 E K K . C K 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.48 ? metalc ? metalc17 C N GLY 79 C GLY 79 1_555 I K K . C K 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc18 C N GLY 79 C GLY 79 4_575 I K K . C K 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc19 C N GLY 79 C GLY 79 3_755 I K K . C K 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc20 C N GLY 79 C GLY 79 2_775 I K K . C K 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc21 C NE2 HIS 124 C HIS 124 1_555 J K K . C K 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc22 C NE2 HIS 124 C HIS 124 2_775 J K K . C K 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc23 C NE2 HIS 124 C HIS 124 4_575 J K K . C K 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc24 C NE2 HIS 124 C HIS 124 3_755 J K K . C K 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc25 D K K . C K 125 1_555 E K K . C K 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.56 ? metalc ? metalc26 D K K . C K 125 1_555 E K K . C K 126 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.56 ? metalc ? metalc27 D K K . C K 125 1_555 E K K . C K 126 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.56 ? metalc ? metalc28 D K K . C K 125 1_555 E K K . C K 126 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.56 ? metalc ? metalc29 D K K . C K 125 1_555 I K K . C K 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? metalc ? metalc30 D K K . C K 125 1_555 I K K . C K 130 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? metalc ? metalc31 D K K . C K 125 1_555 I K K . C K 130 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? metalc ? metalc32 D K K . C K 125 1_555 I K K . C K 130 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? metalc ? metalc33 E K K . C K 126 1_555 F K K . C K 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc34 E K K . C K 126 1_555 F K K . C K 127 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc35 E K K . C K 126 1_555 F K K . C K 127 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc36 E K K . C K 126 1_555 F K K . C K 127 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc37 F K K . C K 127 1_555 G K K . C K 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc38 F K K . C K 127 1_555 G K K . C K 128 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc39 F K K . C K 127 1_555 G K K . C K 128 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc40 F K K . C K 127 1_555 G K K . C K 128 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? # _chem_comp.formula 'C9 H20 O' _chem_comp.formula_weight 144.254 _chem_comp.id F09 _chem_comp.mon_nstd_flag . _chem_comp.name NONAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F09 sing 83 n n C1 H11 F09 sing 84 n n C1 H12 F09 sing 85 n n C1 H13 F09 sing 86 n n C2 C3 F09 sing 87 n n C2 H21 F09 sing 88 n n C2 H22 F09 sing 89 n n C3 C4 F09 sing 90 n n C3 H31 F09 sing 91 n n C3 H32 F09 sing 92 n n C4 C5 F09 sing 93 n n C4 H41 F09 sing 94 n n C4 H42 F09 sing 95 n n C5 C6 F09 sing 96 n n C5 H51 F09 sing 97 n n C5 H52 F09 sing 98 n n C6 C7 F09 sing 99 n n C6 H61 F09 sing 100 n n C6 H62 F09 sing 101 n n C7 C8 F09 sing 102 n n C7 H71 F09 sing 103 n n C7 H72 F09 sing 104 n n C8 C9 F09 sing 105 n n C8 H81 F09 sing 106 n n C8 H82 F09 sing 107 n n C9 OXT F09 sing 108 n n C9 H91 F09 sing 109 n n C9 H92 F09 sing 110 n n OXT HXT F09 sing 111 n n # _atom_sites.entry_id 2ATK _atom_sites.fract_transf_matrix[1][1] 0.006445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 K C 1 125 101 K K . E 4 K C 1 126 102 K K . F 4 K C 1 127 103 K K . G 4 K C 1 128 104 K K . H 4 K C 1 129 105 K K . I 4 K C 1 130 106 K K . J 4 K C 1 131 107 K K . K 5 F09 C 1 202 202 F09 F09 . L 6 HOH A 1 220 13 HOH HOH . L 6 HOH A 2 221 15 HOH HOH . L 6 HOH A 3 222 16 HOH HOH . L 6 HOH A 4 223 18 HOH HOH . L 6 HOH A 5 224 21 HOH HOH . L 6 HOH A 6 225 24 HOH HOH . L 6 HOH A 7 226 27 HOH HOH . L 6 HOH A 8 227 30 HOH HOH . L 6 HOH A 9 228 36 HOH HOH . L 6 HOH A 10 229 37 HOH HOH . M 6 HOH B 1 213 1 HOH HOH . M 6 HOH B 2 214 2 HOH HOH . M 6 HOH B 3 215 4 HOH HOH . M 6 HOH B 4 216 5 HOH HOH . M 6 HOH B 5 217 6 HOH HOH . M 6 HOH B 6 218 7 HOH HOH . M 6 HOH B 7 219 10 HOH HOH . M 6 HOH B 8 220 11 HOH HOH . M 6 HOH B 9 221 12 HOH HOH . M 6 HOH B 10 222 14 HOH HOH . M 6 HOH B 11 223 17 HOH HOH . M 6 HOH B 12 224 19 HOH HOH . M 6 HOH B 13 225 22 HOH HOH . M 6 HOH B 14 226 23 HOH HOH . M 6 HOH B 15 227 25 HOH HOH . M 6 HOH B 16 228 26 HOH HOH . M 6 HOH B 17 229 29 HOH HOH . M 6 HOH B 18 230 31 HOH HOH . M 6 HOH B 19 231 32 HOH HOH . M 6 HOH B 20 232 34 HOH HOH . M 6 HOH B 21 233 35 HOH HOH . M 6 HOH B 22 234 39 HOH HOH . M 6 HOH B 23 235 40 HOH HOH . M 6 HOH B 24 236 43 HOH HOH . N 6 HOH C 1 203 3 HOH HOH . N 6 HOH C 2 204 8 HOH HOH . N 6 HOH C 3 205 9 HOH HOH . N 6 HOH C 4 206 20 HOH HOH . N 6 HOH C 5 207 28 HOH HOH . N 6 HOH C 6 208 33 HOH HOH . N 6 HOH C 7 209 38 HOH HOH . N 6 HOH C 8 210 41 HOH HOH . N 6 HOH C 9 211 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F09 . . . K 5 157.698 134.124 -41.109 1 100.28 ? C1 F09 202 C 1 HETATM 2 C C2 F09 . . . K 5 157.545 133.892 -39.607 1 99.39 ? C2 F09 202 C 1 HETATM 3 C C3 F09 . . . K 5 156.972 132.507 -39.304 1 98.47 ? C3 F09 202 C 1 HETATM 4 C C4 F09 . . . K 5 155.465 132.53 -39.005 1 97.51 ? C4 F09 202 C 1 HETATM 5 C C5 F09 . . . K 5 155.146 132.63 -37.51 1 96.42 ? C5 F09 202 C 1 HETATM 6 C C6 F09 . . . K 5 155.244 131.278 -36.799 1 94.69 ? C6 F09 202 C 1 HETATM 7 C C7 F09 . . . K 5 154.921 131.373 -35.315 1 92.99 ? C7 F09 202 C 1 HETATM 8 C C8 F09 . . . K 5 155.032 129.998 -34.668 1 92.24 ? C8 F09 202 C 1 HETATM 9 C C9 F09 . . . K 5 154.717 130.009 -33.17 1 91.17 ? C9 F09 202 C 1 HETATM 10 O OXT F09 . . . K 5 155.609 129.958 -32.32 1 90.46 ? OXT F09 202 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #