data_2ATP
#
_model_server_result.job_id            elM5C-N22AQ4YXQUrs8J1w 
_model_server_result.datetime_utc      '2024-11-02 07:20:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2atp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":213}' 
#
_entry.id    2ATP 
#
_exptl.entry_id    2ATP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.67 
_cell.angle_gamma         90 
_cell.entry_id            2ATP 
_cell.length_a            37.668 
_cell.length_b            92.655 
_cell.length_c            79.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ATP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,J,K 1 1 
D,E,F,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 102 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 20 B CYS 20 1_555 C SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
disulf ? disulf3 D SG CYS 26 C CYS 26 1_555 D SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 F SG CYS 20 D CYS 20 1_555 F SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
covale ? covale1 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 B C ALA 29 E ALA 29 1_555 C N LEU 1 B LEU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 D ND2 ASN 42 C ASN 42 1_555 H C1 NAG . C NAG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale4 E C ALA 29 F ALA 29 1_555 F N LEU 1 D LEU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 F ND2 ASN 13 D ASN 13 1_555 I C1 NAG . D NAG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2ATP 
_atom_sites.fract_transf_matrix[1][1]    0.026548 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002636 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010793 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 242 242 NAG NAG . 
H 4 NAG C 1 242 242 NAG NAG . 
I 4 NAG D 1 213 213 NAG NAG . 
J 5 HOH A 1 243 8 HOH HOH . 
J 5 HOH A 2 244 9 HOH HOH . 
J 5 HOH A 3 245 23 HOH HOH . 
J 5 HOH A 4 246 31 HOH HOH . 
J 5 HOH A 5 247 32 HOH HOH . 
J 5 HOH A 6 248 37 HOH HOH . 
J 5 HOH A 7 249 38 HOH HOH . 
J 5 HOH A 8 250 41 HOH HOH . 
K 5 HOH B 1 116 2 HOH HOH . 
K 5 HOH B 2 117 3 HOH HOH . 
K 5 HOH B 3 118 4 HOH HOH . 
K 5 HOH B 4 119 12 HOH HOH . 
K 5 HOH B 5 120 13 HOH HOH . 
K 5 HOH B 6 121 18 HOH HOH . 
K 5 HOH B 7 122 19 HOH HOH . 
K 5 HOH B 8 123 21 HOH HOH . 
K 5 HOH B 9 124 22 HOH HOH . 
K 5 HOH B 10 125 24 HOH HOH . 
K 5 HOH B 11 126 25 HOH HOH . 
K 5 HOH B 12 127 26 HOH HOH . 
K 5 HOH B 13 128 29 HOH HOH . 
K 5 HOH B 14 129 30 HOH HOH . 
K 5 HOH B 15 130 33 HOH HOH . 
K 5 HOH B 16 131 34 HOH HOH . 
K 5 HOH B 17 132 39 HOH HOH . 
K 5 HOH B 18 133 40 HOH HOH . 
L 5 HOH C 1 243 5 HOH HOH . 
L 5 HOH C 2 244 6 HOH HOH . 
L 5 HOH C 3 245 27 HOH HOH . 
L 5 HOH C 4 246 28 HOH HOH . 
L 5 HOH C 5 247 35 HOH HOH . 
L 5 HOH C 6 248 42 HOH HOH . 
L 5 HOH C 7 249 44 HOH HOH . 
M 5 HOH D 1 214 1 HOH HOH . 
M 5 HOH D 2 215 7 HOH HOH . 
M 5 HOH D 3 216 10 HOH HOH . 
M 5 HOH D 4 217 11 HOH HOH . 
M 5 HOH D 5 218 14 HOH HOH . 
M 5 HOH D 6 219 15 HOH HOH . 
M 5 HOH D 7 220 16 HOH HOH . 
M 5 HOH D 8 221 17 HOH HOH . 
M 5 HOH D 9 222 20 HOH HOH . 
M 5 HOH D 10 223 36 HOH HOH . 
M 5 HOH D 11 224 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 4 19.64 38.339 7.831 1 82.01 ? C1 NAG 213 D 1 
HETATM 2 C C2 NAG . . . I 4 20.903 37.446 7.774 1 82.55 ? C2 NAG 213 D 1 
HETATM 3 C C3 NAG . . . I 4 21.935 38.018 6.771 1 82.22 ? C3 NAG 213 D 1 
HETATM 4 C C4 NAG . . . I 4 21.293 38.518 5.447 1 83.59 ? C4 NAG 213 D 1 
HETATM 5 C C5 NAG . . . I 4 20.132 39.428 5.803 1 81.21 ? C5 NAG 213 D 1 
HETATM 6 C C6 NAG . . . I 4 19.341 40.18 4.778 1 80.05 ? C6 NAG 213 D 1 
HETATM 7 C C7 NAG . . . I 4 21.911 36.355 9.727 1 84.05 ? C7 NAG 213 D 1 
HETATM 8 C C8 NAG . . . I 4 23.38 36.359 10.147 1 86.06 ? C8 NAG 213 D 1 
HETATM 9 N N2 NAG . . . I 4 21.469 37.448 9.108 1 82.02 ? N2 NAG 213 D 1 
HETATM 10 O O3 NAG . . . I 4 22.928 37.028 6.489 1 85.97 ? O3 NAG 213 D 1 
HETATM 11 O O4 NAG . . . I 4 22.286 39.224 4.684 1 85.99 ? O4 NAG 213 D 1 
HETATM 12 O O5 NAG . . . I 4 19.216 38.674 6.485 1 81.1 ? O5 NAG 213 D 1 
HETATM 13 O O6 NAG . . . I 4 19.777 39.969 3.414 1 77.77 ? O6 NAG 213 D 1 
HETATM 14 O O7 NAG . . . I 4 21.187 35.419 10.036 1 85.4 ? O7 NAG 213 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#