data_2ATP # _model_server_result.job_id SyITqmnpauR9YIQ6VMmxZA _model_server_result.datetime_utc '2024-11-02 07:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2atp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":242}' # _entry.id 2ATP # _exptl.entry_id 2ATP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.67 _cell.angle_gamma 90 _cell.entry_id 2ATP _cell.length_a 37.668 _cell.length_b 92.655 _cell.length_c 79.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ATP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,J,K 1 1 D,E,F,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 102 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 C SG CYS 20 B CYS 20 1_555 C SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? disulf ? disulf3 D SG CYS 26 C CYS 26 1_555 D SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 F SG CYS 20 D CYS 20 1_555 F SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? covale ? covale1 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 B C ALA 29 E ALA 29 1_555 C N LEU 1 B LEU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D ND2 ASN 42 C ASN 42 1_555 H C1 NAG . C NAG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 E C ALA 29 F ALA 29 1_555 F N LEU 1 D LEU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 F ND2 ASN 13 D ASN 13 1_555 I C1 NAG . D NAG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2ATP _atom_sites.fract_transf_matrix[1][1] 0.026548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002636 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 242 242 NAG NAG . H 4 NAG C 1 242 242 NAG NAG . I 4 NAG D 1 213 213 NAG NAG . J 5 HOH A 1 243 8 HOH HOH . J 5 HOH A 2 244 9 HOH HOH . J 5 HOH A 3 245 23 HOH HOH . J 5 HOH A 4 246 31 HOH HOH . J 5 HOH A 5 247 32 HOH HOH . J 5 HOH A 6 248 37 HOH HOH . J 5 HOH A 7 249 38 HOH HOH . J 5 HOH A 8 250 41 HOH HOH . K 5 HOH B 1 116 2 HOH HOH . K 5 HOH B 2 117 3 HOH HOH . K 5 HOH B 3 118 4 HOH HOH . K 5 HOH B 4 119 12 HOH HOH . K 5 HOH B 5 120 13 HOH HOH . K 5 HOH B 6 121 18 HOH HOH . K 5 HOH B 7 122 19 HOH HOH . K 5 HOH B 8 123 21 HOH HOH . K 5 HOH B 9 124 22 HOH HOH . K 5 HOH B 10 125 24 HOH HOH . K 5 HOH B 11 126 25 HOH HOH . K 5 HOH B 12 127 26 HOH HOH . K 5 HOH B 13 128 29 HOH HOH . K 5 HOH B 14 129 30 HOH HOH . K 5 HOH B 15 130 33 HOH HOH . K 5 HOH B 16 131 34 HOH HOH . K 5 HOH B 17 132 39 HOH HOH . K 5 HOH B 18 133 40 HOH HOH . L 5 HOH C 1 243 5 HOH HOH . L 5 HOH C 2 244 6 HOH HOH . L 5 HOH C 3 245 27 HOH HOH . L 5 HOH C 4 246 28 HOH HOH . L 5 HOH C 5 247 35 HOH HOH . L 5 HOH C 6 248 42 HOH HOH . L 5 HOH C 7 249 44 HOH HOH . M 5 HOH D 1 214 1 HOH HOH . M 5 HOH D 2 215 7 HOH HOH . M 5 HOH D 3 216 10 HOH HOH . M 5 HOH D 4 217 11 HOH HOH . M 5 HOH D 5 218 14 HOH HOH . M 5 HOH D 6 219 15 HOH HOH . M 5 HOH D 7 220 16 HOH HOH . M 5 HOH D 8 221 17 HOH HOH . M 5 HOH D 9 222 20 HOH HOH . M 5 HOH D 10 223 36 HOH HOH . M 5 HOH D 11 224 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 -10.881 14.509 -10.257 1 92.02 ? C1 NAG 242 C 1 HETATM 2 C C2 NAG . . . H 4 -12.069 13.84 -9.511 1 93.74 ? C2 NAG 242 C 1 HETATM 3 C C3 NAG . . . H 4 -13.469 14 -10.142 1 93.85 ? C3 NAG 242 C 1 HETATM 4 C C4 NAG . . . H 4 -13.612 15.311 -10.87 1 94.24 ? C4 NAG 242 C 1 HETATM 5 C C5 NAG . . . H 4 -12.468 15.355 -11.837 1 95.08 ? C5 NAG 242 C 1 HETATM 6 C C6 NAG . . . H 4 -12.604 16.423 -12.903 1 96.87 ? C6 NAG 242 C 1 HETATM 7 C C7 NAG . . . H 4 -11.701 11.813 -8.253 1 95.88 ? C7 NAG 242 C 1 HETATM 8 C C8 NAG . . . H 4 -13.001 11.519 -7.518 1 96.02 ? C8 NAG 242 C 1 HETATM 9 N N2 NAG . . . H 4 -11.795 12.418 -9.43 1 96.01 ? N2 NAG 242 C 1 HETATM 10 O O3 NAG . . . H 4 -14.466 13.91 -9.135 1 91.3 ? O3 NAG 242 C 1 HETATM 11 O O4 NAG . . . H 4 -14.853 15.355 -11.555 1 97.23 ? O4 NAG 242 C 1 HETATM 12 O O5 NAG . . . H 4 -11.274 15.609 -11.093 1 93.78 ? O5 NAG 242 C 1 HETATM 13 O O6 NAG . . . H 4 -13.361 15.946 -14.008 1 97.06 ? O6 NAG 242 C 1 HETATM 14 O O7 NAG . . . H 4 -10.627 11.455 -7.774 1 96.38 ? O7 NAG 242 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #