data_2ATZ
#
_model_server_result.job_id            nuhut_dyEpQyzfqOGfse4w 
_model_server_result.datetime_utc      '2024-12-21 14:14:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2atz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    2ATZ 
#
_exptl.entry_id    2ATZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ATZ 
_cell.length_a            77.093 
_cell.length_b            77.093 
_cell.length_c            118.187 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ATZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 33 1_555 A SG CYS 33 A CYS 33 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
covale ? covale1 A C GLU 3 A GLU 3 1_555 A N MSE 4 A MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C MSE 4 A MSE 4 1_555 A N GLU 5 A GLU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C ALA 43 A ALA 43 1_555 A N MSE 44 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale4 A C MSE 44 A MSE 44 1_555 A N LEU 45 A LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C PHE 99 A PHE 99 1_555 A N MSE 100 A MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C MSE 100 A MSE 100 1_555 A N ASN 101 A ASN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale7 A C SER 135 A SER 135 1_555 A N MSE 136 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C MSE 136 A MSE 136 1_555 A N LYS 137 A LYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                DGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DGT sing 83 n n 
PG O2G DGT sing 84 n n 
O1G HO1G DGT sing 85 n n 
O2G HO2G DGT sing 86 n n 
O3G PG DGT doub 87 n n 
O3B PG DGT sing 88 n n 
PB O3B DGT sing 89 n n 
PB O1B DGT sing 90 n n 
PB O3A DGT sing 91 n n 
O1B HO1B DGT sing 92 n n 
O2B PB DGT doub 93 n n 
PA O3A DGT sing 94 n n 
PA O1A DGT sing 95 n n 
O1A HO1A DGT sing 96 n n 
O2A PA DGT doub 97 n n 
O5' PA DGT sing 98 n n 
O5' C5' DGT sing 99 n n 
C5' H5' DGT sing 100 n n 
C5' "H5'A" DGT sing 101 n n 
C4' C5' DGT sing 102 n n 
C4' H4' DGT sing 103 n n 
O4' C4' DGT sing 104 n n 
C3' C4' DGT sing 105 n n 
C3' O3' DGT sing 106 n n 
C3' H3' DGT sing 107 n n 
O3' HO3' DGT sing 108 n n 
C2' C3' DGT sing 109 n n 
C2' C1' DGT sing 110 n n 
C2' H2' DGT sing 111 n n 
C2' "H2'A" DGT sing 112 n n 
C1' O4' DGT sing 113 n n 
C1' H1' DGT sing 114 n n 
N9 C1' DGT sing 115 n n 
N9 C4 DGT sing 116 n y 
C8 N9 DGT sing 117 n y 
C8 H8 DGT sing 118 n n 
N7 C8 DGT doub 119 n y 
N7 C5 DGT sing 120 n y 
C5 C6 DGT sing 121 n n 
C5 C4 DGT doub 122 n y 
C6 N1 DGT sing 123 n n 
O6 C6 DGT doub 124 n n 
N1 C2 DGT sing 125 n n 
C2 N3 DGT doub 126 n n 
C2 N2 DGT sing 127 n n 
N2 HN2 DGT sing 128 n n 
N2 HN2A DGT sing 129 n n 
C4 N3 DGT sing 130 n n 
N1 H16 DGT sing 131 n n 
#
_atom_sites.entry_id                     2ATZ 
_atom_sites.fract_transf_matrix[1][1]    0.012971 
_atom_sites.fract_transf_matrix[1][2]    0.007489 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DGT A 1 201 201 DGT DGT . 
C 3 EDO A 1 202 202 EDO EDO . 
D 4 HOH A 1 203 1 HOH HOH . 
D 4 HOH A 2 204 2 HOH HOH . 
D 4 HOH A 3 205 3 HOH HOH . 
D 4 HOH A 4 206 4 HOH HOH . 
D 4 HOH A 5 207 5 HOH HOH . 
D 4 HOH A 6 208 6 HOH HOH . 
D 4 HOH A 7 209 7 HOH HOH . 
D 4 HOH A 8 210 8 HOH HOH . 
D 4 HOH A 9 211 9 HOH HOH . 
D 4 HOH A 10 212 10 HOH HOH . 
D 4 HOH A 11 213 11 HOH HOH . 
D 4 HOH A 12 214 12 HOH HOH . 
D 4 HOH A 13 215 13 HOH HOH . 
D 4 HOH A 14 216 14 HOH HOH . 
D 4 HOH A 15 217 15 HOH HOH . 
D 4 HOH A 16 218 16 HOH HOH . 
D 4 HOH A 17 219 17 HOH HOH . 
D 4 HOH A 18 220 18 HOH HOH . 
D 4 HOH A 19 221 19 HOH HOH . 
D 4 HOH A 20 222 20 HOH HOH . 
D 4 HOH A 21 223 21 HOH HOH . 
D 4 HOH A 22 224 22 HOH HOH . 
D 4 HOH A 23 225 23 HOH HOH . 
D 4 HOH A 24 226 24 HOH HOH . 
D 4 HOH A 25 227 25 HOH HOH . 
D 4 HOH A 26 228 26 HOH HOH . 
D 4 HOH A 27 229 27 HOH HOH . 
D 4 HOH A 28 230 28 HOH HOH . 
D 4 HOH A 29 231 29 HOH HOH . 
D 4 HOH A 30 232 30 HOH HOH . 
D 4 HOH A 31 233 31 HOH HOH . 
D 4 HOH A 32 234 32 HOH HOH . 
D 4 HOH A 33 235 33 HOH HOH . 
D 4 HOH A 34 236 34 HOH HOH . 
D 4 HOH A 35 237 35 HOH HOH . 
D 4 HOH A 36 238 36 HOH HOH . 
D 4 HOH A 37 239 37 HOH HOH . 
D 4 HOH A 38 240 38 HOH HOH . 
D 4 HOH A 39 241 39 HOH HOH . 
D 4 HOH A 40 242 40 HOH HOH . 
D 4 HOH A 41 243 41 HOH HOH . 
D 4 HOH A 42 244 42 HOH HOH . 
D 4 HOH A 43 245 43 HOH HOH . 
D 4 HOH A 44 246 44 HOH HOH . 
D 4 HOH A 45 247 45 HOH HOH . 
D 4 HOH A 46 248 46 HOH HOH . 
D 4 HOH A 47 249 47 HOH HOH . 
D 4 HOH A 48 250 48 HOH HOH . 
D 4 HOH A 49 251 49 HOH HOH . 
D 4 HOH A 50 252 50 HOH HOH . 
D 4 HOH A 51 253 51 HOH HOH . 
D 4 HOH A 52 254 52 HOH HOH . 
D 4 HOH A 53 255 53 HOH HOH . 
D 4 HOH A 54 256 54 HOH HOH . 
D 4 HOH A 55 257 55 HOH HOH . 
D 4 HOH A 56 258 56 HOH HOH . 
D 4 HOH A 57 259 57 HOH HOH . 
D 4 HOH A 58 260 58 HOH HOH . 
D 4 HOH A 59 261 59 HOH HOH . 
D 4 HOH A 60 262 60 HOH HOH . 
D 4 HOH A 61 263 61 HOH HOH . 
D 4 HOH A 62 264 62 HOH HOH . 
D 4 HOH A 63 265 63 HOH HOH . 
D 4 HOH A 64 266 64 HOH HOH . 
D 4 HOH A 65 267 65 HOH HOH . 
D 4 HOH A 66 268 66 HOH HOH . 
D 4 HOH A 67 269 67 HOH HOH . 
D 4 HOH A 68 270 68 HOH HOH . 
D 4 HOH A 69 271 69 HOH HOH . 
D 4 HOH A 70 272 70 HOH HOH . 
D 4 HOH A 71 273 71 HOH HOH . 
D 4 HOH A 72 274 72 HOH HOH . 
D 4 HOH A 73 275 73 HOH HOH . 
D 4 HOH A 74 276 74 HOH HOH . 
D 4 HOH A 75 277 75 HOH HOH . 
D 4 HOH A 76 278 76 HOH HOH . 
D 4 HOH A 77 279 77 HOH HOH . 
D 4 HOH A 78 280 78 HOH HOH . 
D 4 HOH A 79 281 79 HOH HOH . 
D 4 HOH A 80 282 80 HOH HOH . 
D 4 HOH A 81 283 81 HOH HOH . 
D 4 HOH A 82 284 82 HOH HOH . 
D 4 HOH A 83 285 83 HOH HOH . 
D 4 HOH A 84 286 84 HOH HOH . 
D 4 HOH A 85 287 85 HOH HOH . 
D 4 HOH A 86 288 86 HOH HOH . 
D 4 HOH A 87 289 87 HOH HOH . 
D 4 HOH A 88 290 88 HOH HOH . 
D 4 HOH A 89 291 89 HOH HOH . 
D 4 HOH A 90 292 90 HOH HOH . 
D 4 HOH A 91 293 91 HOH HOH . 
D 4 HOH A 92 294 92 HOH HOH . 
D 4 HOH A 93 295 93 HOH HOH . 
D 4 HOH A 94 296 94 HOH HOH . 
D 4 HOH A 95 297 95 HOH HOH . 
D 4 HOH A 96 298 96 HOH HOH . 
D 4 HOH A 97 299 97 HOH HOH . 
D 4 HOH A 98 300 98 HOH HOH . 
D 4 HOH A 99 301 99 HOH HOH . 
D 4 HOH A 100 302 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DGT . . . B 2 6.374 28.638 -5.902 1 28.71 ? PG DGT 201 A 1 
HETATM 2 O O1G DGT . . . B 2 6.707 29.644 -4.849 1 28.25 ? O1G DGT 201 A 1 
HETATM 3 O O2G DGT . . . B 2 7.046 27.382 -5.606 1 25.26 ? O2G DGT 201 A 1 
HETATM 4 O O3G DGT . . . B 2 6.483 29.313 -7.232 1 27.84 ? O3G DGT 201 A 1 
HETATM 5 O O3B DGT . . . B 2 4.802 28.233 -5.903 1 28.38 ? O3B DGT 201 A 1 
HETATM 6 P PB DGT . . . B 2 3.605 28.767 -4.949 1 25.39 ? PB DGT 201 A 1 
HETATM 7 O O1B DGT . . . B 2 4.118 28.798 -3.499 1 25.74 ? O1B DGT 201 A 1 
HETATM 8 O O2B DGT . . . B 2 2.485 27.82 -5.063 1 23.27 ? O2B DGT 201 A 1 
HETATM 9 O O3A DGT . . . B 2 3.112 30.193 -5.436 1 23.63 ? O3A DGT 201 A 1 
HETATM 10 P PA DGT . . . B 2 3.358 31.683 -4.819 1 25.99 ? PA DGT 201 A 1 
HETATM 11 O O1A DGT . . . B 2 3.248 32.516 -6.055 1 26.97 ? O1A DGT 201 A 1 
HETATM 12 O O2A DGT . . . B 2 4.584 31.644 -3.866 1 23.88 ? O2A DGT 201 A 1 
HETATM 13 O O5' DGT . . . B 2 1.911 31.87 -4.07 1 26.39 ? O5' DGT 201 A 1 
HETATM 14 C C5' DGT . . . B 2 1.625 31.181 -2.834 1 22.65 ? C5' DGT 201 A 1 
HETATM 15 C C4' DGT . . . B 2 0.199 30.639 -2.916 1 22.21 ? C4' DGT 201 A 1 
HETATM 16 O O4' DGT . . . B 2 -0.613 31.751 -3.174 1 21.7 ? O4' DGT 201 A 1 
HETATM 17 C C3' DGT . . . B 2 -0.145 29.65 -4.055 1 22.29 ? C3' DGT 201 A 1 
HETATM 18 O O3' DGT . . . B 2 0.181 28.301 -3.692 1 24.95 ? O3' DGT 201 A 1 
HETATM 19 C C2' DGT . . . B 2 -1.643 29.859 -4.225 1 22.49 ? C2' DGT 201 A 1 
HETATM 20 C C1' DGT . . . B 2 -1.787 31.342 -3.859 1 25.24 ? C1' DGT 201 A 1 
HETATM 21 N N9 DGT . . . B 2 -1.9 32.171 -5.072 1 27.26 ? N9 DGT 201 A 1 
HETATM 22 C C8 DGT . . . B 2 -0.885 32.625 -5.889 1 28.19 ? C8 DGT 201 A 1 
HETATM 23 N N7 DGT . . . B 2 -1.408 33.364 -6.92 1 28.51 ? N7 DGT 201 A 1 
HETATM 24 C C5 DGT . . . B 2 -2.747 33.322 -6.8 1 28.49 ? C5 DGT 201 A 1 
HETATM 25 C C6 DGT . . . B 2 -3.879 33.894 -7.55 1 29.81 ? C6 DGT 201 A 1 
HETATM 26 O O6 DGT . . . B 2 -3.639 34.604 -8.614 1 30.01 ? O6 DGT 201 A 1 
HETATM 27 N N1 DGT . . . B 2 -5.101 33.659 -7.06 1 27.48 ? N1 DGT 201 A 1 
HETATM 28 C C2 DGT . . . B 2 -5.364 32.961 -5.946 1 27.92 ? C2 DGT 201 A 1 
HETATM 29 N N2 DGT . . . B 2 -6.656 32.799 -5.617 1 26.68 ? N2 DGT 201 A 1 
HETATM 30 N N3 DGT . . . B 2 -4.365 32.4 -5.169 1 27.18 ? N3 DGT 201 A 1 
HETATM 31 C C4 DGT . . . B 2 -3.076 32.586 -5.547 1 27.37 ? C4 DGT 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#