data_2AVI
#
_model_server_result.job_id            AJEKSclw425qZYrWTRUnhQ 
_model_server_result.datetime_utc      '2025-03-01 07:36:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2avi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":150}' 
#
_entry.id    2AVI 
#
_exptl.entry_id    2AVI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              244.311 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BIOTIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2AVI 
_cell.length_a            72.15 
_cell.length_b            80.37 
_cell.length_c            43.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AVI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 80.37 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 E C1 NAG . B NAG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? 
#
_chem_comp.formula           'C10 H16 N2 O3 S' 
_chem_comp.formula_weight    244.311 
_chem_comp.id                BTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BIOTIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 O11 BTN doub 70 n n 
C11 O12 BTN sing 71 n n 
C11 C10 BTN sing 72 n n 
O12 HO2 BTN sing 73 n n 
C10 C9 BTN sing 74 n n 
C10 H101 BTN sing 75 n n 
C10 H102 BTN sing 76 n n 
C9 C8 BTN sing 77 n n 
C9 H91 BTN sing 78 n n 
C9 H92 BTN sing 79 n n 
C8 C7 BTN sing 80 n n 
C8 H81 BTN sing 81 n n 
C8 H82 BTN sing 82 n n 
C7 C2 BTN sing 83 n n 
C7 H71 BTN sing 84 n n 
C7 H72 BTN sing 85 n n 
C2 S1 BTN sing 86 n n 
C2 C4 BTN sing 87 n n 
C2 H2 BTN sing 88 n n 
S1 C6 BTN sing 89 n n 
C6 C5 BTN sing 90 n n 
C6 H61 BTN sing 91 n n 
C6 H62 BTN sing 92 n n 
C5 N1 BTN sing 93 n n 
C5 C4 BTN sing 94 n n 
C5 H5 BTN sing 95 n n 
N1 C3 BTN sing 96 n n 
N1 HN1 BTN sing 97 n n 
C3 O3 BTN doub 98 n n 
C3 N2 BTN sing 99 n n 
N2 C4 BTN sing 100 n n 
N2 HN2 BTN sing 101 n n 
C4 H4 BTN sing 102 n n 
#
_atom_sites.entry_id                     2AVI 
_atom_sites.fract_transf_matrix[1][1]    0.01386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012442 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 340 340 NAG NAG . 
D 3 BTN A 1 150 150 BTN BTN . 
E 2 NAG B 1 341 341 NAG NAG . 
F 3 BTN B 1 150 150 BTN BTN . 
G 4 HOH A 1 503 503 HOH HOH . 
G 4 HOH A 2 504 504 HOH HOH . 
G 4 HOH A 3 505 505 HOH HOH . 
G 4 HOH A 4 506 506 HOH HOH . 
G 4 HOH A 5 511 511 HOH HOH . 
G 4 HOH A 6 512 512 HOH HOH . 
G 4 HOH A 7 516 516 HOH HOH . 
G 4 HOH A 8 517 517 HOH HOH . 
G 4 HOH A 9 518 518 HOH HOH . 
G 4 HOH A 10 519 519 HOH HOH . 
G 4 HOH A 11 522 522 HOH HOH . 
G 4 HOH A 12 523 523 HOH HOH . 
G 4 HOH A 13 524 524 HOH HOH . 
G 4 HOH A 14 526 526 HOH HOH . 
G 4 HOH A 15 527 527 HOH HOH . 
G 4 HOH A 16 536 536 HOH HOH . 
G 4 HOH A 17 545 545 HOH HOH . 
G 4 HOH A 18 546 546 HOH HOH . 
G 4 HOH A 19 548 548 HOH HOH . 
G 4 HOH A 20 549 549 HOH HOH . 
G 4 HOH A 21 551 551 HOH HOH . 
G 4 HOH A 22 555 555 HOH HOH . 
G 4 HOH A 23 557 557 HOH HOH . 
G 4 HOH A 24 558 558 HOH HOH . 
G 4 HOH A 25 561 561 HOH HOH . 
G 4 HOH A 26 562 562 HOH HOH . 
G 4 HOH A 27 563 563 HOH HOH . 
G 4 HOH A 28 567 567 HOH HOH . 
G 4 HOH A 29 568 568 HOH HOH . 
G 4 HOH A 30 570 570 HOH HOH . 
G 4 HOH A 31 571 571 HOH HOH . 
G 4 HOH A 32 572 572 HOH HOH . 
G 4 HOH A 33 573 573 HOH HOH . 
G 4 HOH A 34 574 574 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 502 502 HOH HOH . 
H 4 HOH B 3 507 507 HOH HOH . 
H 4 HOH B 4 508 508 HOH HOH . 
H 4 HOH B 5 509 509 HOH HOH . 
H 4 HOH B 6 510 510 HOH HOH . 
H 4 HOH B 7 513 513 HOH HOH . 
H 4 HOH B 8 514 514 HOH HOH . 
H 4 HOH B 9 515 515 HOH HOH . 
H 4 HOH B 10 520 520 HOH HOH . 
H 4 HOH B 11 521 521 HOH HOH . 
H 4 HOH B 12 525 525 HOH HOH . 
H 4 HOH B 13 528 528 HOH HOH . 
H 4 HOH B 14 529 529 HOH HOH . 
H 4 HOH B 15 530 530 HOH HOH . 
H 4 HOH B 16 531 531 HOH HOH . 
H 4 HOH B 17 532 532 HOH HOH . 
H 4 HOH B 18 533 533 HOH HOH . 
H 4 HOH B 19 534 534 HOH HOH . 
H 4 HOH B 20 535 535 HOH HOH . 
H 4 HOH B 21 537 537 HOH HOH . 
H 4 HOH B 22 538 538 HOH HOH . 
H 4 HOH B 23 539 539 HOH HOH . 
H 4 HOH B 24 540 540 HOH HOH . 
H 4 HOH B 25 541 541 HOH HOH . 
H 4 HOH B 26 542 542 HOH HOH . 
H 4 HOH B 27 543 543 HOH HOH . 
H 4 HOH B 28 544 544 HOH HOH . 
H 4 HOH B 29 547 547 HOH HOH . 
H 4 HOH B 30 550 550 HOH HOH . 
H 4 HOH B 31 552 552 HOH HOH . 
H 4 HOH B 32 553 553 HOH HOH . 
H 4 HOH B 33 554 554 HOH HOH . 
H 4 HOH B 34 556 556 HOH HOH . 
H 4 HOH B 35 559 559 HOH HOH . 
H 4 HOH B 36 560 560 HOH HOH . 
H 4 HOH B 37 564 564 HOH HOH . 
H 4 HOH B 38 565 565 HOH HOH . 
H 4 HOH B 39 566 566 HOH HOH . 
H 4 HOH B 40 569 569 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 BTN . . . D 3 -4.698 31.241 28.703 1 10.56 ? C11 BTN 150 A 1 
HETATM 2 O O11 BTN . . . D 3 -3.532 31.372 29.132 1 9.4 ? O11 BTN 150 A 1 
HETATM 3 O O12 BTN . . . D 3 -5.599 32.069 28.926 1 10.38 ? O12 BTN 150 A 1 
HETATM 4 C C10 BTN . . . D 3 -4.993 30.078 27.791 1 10.89 ? C10 BTN 150 A 1 
HETATM 5 C C9 BTN . . . D 3 -3.706 29.348 27.363 1 10.94 ? C9 BTN 150 A 1 
HETATM 6 C C8 BTN . . . D 3 -3.581 29.217 25.866 1 8.38 ? C8 BTN 150 A 1 
HETATM 7 C C7 BTN . . . D 3 -2.195 28.823 25.509 1 5.71 ? C7 BTN 150 A 1 
HETATM 8 C C2 BTN . . . D 3 -1.643 29.584 24.301 1 7.94 ? C2 BTN 150 A 1 
HETATM 9 S S1 BTN . . . D 3 -2.754 29.801 22.861 1 3.65 ? S1 BTN 150 A 1 
HETATM 10 C C6 BTN . . . D 3 -1.392 29.832 21.666 1 7.19 ? C6 BTN 150 A 1 
HETATM 11 C C5 BTN . . . D 3 -0.057 29.369 22.354 1 10.66 ? C5 BTN 150 A 1 
HETATM 12 N N1 BTN . . . D 3 0.453 28.107 21.811 1 11.83 ? N1 BTN 150 A 1 
HETATM 13 C C3 BTN . . . D 3 0.121 27.065 22.534 1 13.18 ? C3 BTN 150 A 1 
HETATM 14 O O3 BTN . . . D 3 0.156 25.866 22.202 1 12.38 ? O3 BTN 150 A 1 
HETATM 15 N N2 BTN . . . D 3 -0.329 27.518 23.725 1 11.83 ? N2 BTN 150 A 1 
HETATM 16 C C4 BTN . . . D 3 -0.324 28.953 23.805 1 10.52 ? C4 BTN 150 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           469 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#