data_2AVI
#
_model_server_result.job_id            wV-PSBrfejCySVzjy6nnDw 
_model_server_result.datetime_utc      '2025-03-01 07:28:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2avi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":340}' 
#
_entry.id    2AVI 
#
_exptl.entry_id    2AVI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2AVI 
_cell.length_a            72.15 
_cell.length_b            80.37 
_cell.length_c            43.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AVI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 80.37 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 E C1 NAG . B NAG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 270 n n 
C1 O1 NAG sing 271 n n 
C1 O5 NAG sing 272 n n 
C1 H1 NAG sing 273 n n 
C2 C3 NAG sing 274 n n 
C2 N2 NAG sing 275 n n 
C2 H2 NAG sing 276 n n 
C3 C4 NAG sing 277 n n 
C3 O3 NAG sing 278 n n 
C3 H3 NAG sing 279 n n 
C4 C5 NAG sing 280 n n 
C4 O4 NAG sing 281 n n 
C4 H4 NAG sing 282 n n 
C5 C6 NAG sing 283 n n 
C5 O5 NAG sing 284 n n 
C5 H5 NAG sing 285 n n 
C6 O6 NAG sing 286 n n 
C6 H61 NAG sing 287 n n 
C6 H62 NAG sing 288 n n 
C7 C8 NAG sing 289 n n 
C7 N2 NAG sing 290 n n 
C7 O7 NAG doub 291 n n 
C8 H81 NAG sing 292 n n 
C8 H82 NAG sing 293 n n 
C8 H83 NAG sing 294 n n 
N2 HN2 NAG sing 295 n n 
O1 HO1 NAG sing 296 n n 
O3 HO3 NAG sing 297 n n 
O4 HO4 NAG sing 298 n n 
O6 HO6 NAG sing 299 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2AVI 
_atom_sites.fract_transf_matrix[1][1]    0.01386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012442 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 340 340 NAG NAG . 
D 3 BTN A 1 150 150 BTN BTN . 
E 2 NAG B 1 341 341 NAG NAG . 
F 3 BTN B 1 150 150 BTN BTN . 
G 4 HOH A 1 503 503 HOH HOH . 
G 4 HOH A 2 504 504 HOH HOH . 
G 4 HOH A 3 505 505 HOH HOH . 
G 4 HOH A 4 506 506 HOH HOH . 
G 4 HOH A 5 511 511 HOH HOH . 
G 4 HOH A 6 512 512 HOH HOH . 
G 4 HOH A 7 516 516 HOH HOH . 
G 4 HOH A 8 517 517 HOH HOH . 
G 4 HOH A 9 518 518 HOH HOH . 
G 4 HOH A 10 519 519 HOH HOH . 
G 4 HOH A 11 522 522 HOH HOH . 
G 4 HOH A 12 523 523 HOH HOH . 
G 4 HOH A 13 524 524 HOH HOH . 
G 4 HOH A 14 526 526 HOH HOH . 
G 4 HOH A 15 527 527 HOH HOH . 
G 4 HOH A 16 536 536 HOH HOH . 
G 4 HOH A 17 545 545 HOH HOH . 
G 4 HOH A 18 546 546 HOH HOH . 
G 4 HOH A 19 548 548 HOH HOH . 
G 4 HOH A 20 549 549 HOH HOH . 
G 4 HOH A 21 551 551 HOH HOH . 
G 4 HOH A 22 555 555 HOH HOH . 
G 4 HOH A 23 557 557 HOH HOH . 
G 4 HOH A 24 558 558 HOH HOH . 
G 4 HOH A 25 561 561 HOH HOH . 
G 4 HOH A 26 562 562 HOH HOH . 
G 4 HOH A 27 563 563 HOH HOH . 
G 4 HOH A 28 567 567 HOH HOH . 
G 4 HOH A 29 568 568 HOH HOH . 
G 4 HOH A 30 570 570 HOH HOH . 
G 4 HOH A 31 571 571 HOH HOH . 
G 4 HOH A 32 572 572 HOH HOH . 
G 4 HOH A 33 573 573 HOH HOH . 
G 4 HOH A 34 574 574 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 502 502 HOH HOH . 
H 4 HOH B 3 507 507 HOH HOH . 
H 4 HOH B 4 508 508 HOH HOH . 
H 4 HOH B 5 509 509 HOH HOH . 
H 4 HOH B 6 510 510 HOH HOH . 
H 4 HOH B 7 513 513 HOH HOH . 
H 4 HOH B 8 514 514 HOH HOH . 
H 4 HOH B 9 515 515 HOH HOH . 
H 4 HOH B 10 520 520 HOH HOH . 
H 4 HOH B 11 521 521 HOH HOH . 
H 4 HOH B 12 525 525 HOH HOH . 
H 4 HOH B 13 528 528 HOH HOH . 
H 4 HOH B 14 529 529 HOH HOH . 
H 4 HOH B 15 530 530 HOH HOH . 
H 4 HOH B 16 531 531 HOH HOH . 
H 4 HOH B 17 532 532 HOH HOH . 
H 4 HOH B 18 533 533 HOH HOH . 
H 4 HOH B 19 534 534 HOH HOH . 
H 4 HOH B 20 535 535 HOH HOH . 
H 4 HOH B 21 537 537 HOH HOH . 
H 4 HOH B 22 538 538 HOH HOH . 
H 4 HOH B 23 539 539 HOH HOH . 
H 4 HOH B 24 540 540 HOH HOH . 
H 4 HOH B 25 541 541 HOH HOH . 
H 4 HOH B 26 542 542 HOH HOH . 
H 4 HOH B 27 543 543 HOH HOH . 
H 4 HOH B 28 544 544 HOH HOH . 
H 4 HOH B 29 547 547 HOH HOH . 
H 4 HOH B 30 550 550 HOH HOH . 
H 4 HOH B 31 552 552 HOH HOH . 
H 4 HOH B 32 553 553 HOH HOH . 
H 4 HOH B 33 554 554 HOH HOH . 
H 4 HOH B 34 556 556 HOH HOH . 
H 4 HOH B 35 559 559 HOH HOH . 
H 4 HOH B 36 560 560 HOH HOH . 
H 4 HOH B 37 564 564 HOH HOH . 
H 4 HOH B 38 565 565 HOH HOH . 
H 4 HOH B 39 566 566 HOH HOH . 
H 4 HOH B 40 569 569 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 1.009 14.801 24.817 1 15.74 ? C1 NAG 340 A 1 
HETATM 2 C C2 NAG . . . C 2 1.458 15.158 26.217 1 17.44 ? C2 NAG 340 A 1 
HETATM 3 C C3 NAG . . . C 2 2.498 14.162 26.622 1 15.84 ? C3 NAG 340 A 1 
HETATM 4 C C4 NAG . . . C 2 2.164 12.804 25.97 1 15.51 ? C4 NAG 340 A 1 
HETATM 5 C C5 NAG . . . C 2 2.293 12.851 24.445 1 16 ? C5 NAG 340 A 1 
HETATM 6 C C6 NAG . . . C 2 1.406 11.788 23.821 1 19.71 ? C6 NAG 340 A 1 
HETATM 7 C C7 NAG . . . C 2 1.298 17.466 27 1 17.16 ? C7 NAG 340 A 1 
HETATM 8 C C8 NAG . . . C 2 1.941 18.832 27.074 1 17.42 ? C8 NAG 340 A 1 
HETATM 9 N N2 NAG . . . C 2 1.99 16.532 26.351 1 16.84 ? N2 NAG 340 A 1 
HETATM 10 O O3 NAG . . . C 2 2.541 14.058 28.016 1 14.02 ? O3 NAG 340 A 1 
HETATM 11 O O4 NAG . . . C 2 3.017 11.808 26.455 1 17.48 ? O4 NAG 340 A 1 
HETATM 12 O O5 NAG . . . C 2 1.902 14.118 23.938 1 16.17 ? O5 NAG 340 A 1 
HETATM 13 O O6 NAG . . . C 2 0.038 12.236 23.757 1 25.6 ? O6 NAG 340 A 1 
HETATM 14 O O7 NAG . . . C 2 0.16 17.286 27.465 1 17.61 ? O7 NAG 340 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#