data_2AVO # _model_server_result.job_id u2OXzUr2DomaYfSJOIQ0iw _model_server_result.datetime_utc '2024-11-08 07:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2avo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2AVO # _exptl.entry_id 2AVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AVO _cell.length_a 51.465 _cell.length_b 58.57 _cell.length_c 61.644 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 90 n n S C1 DMS sing 91 n n S C2 DMS sing 92 n n C1 H11 DMS sing 93 n n C1 H12 DMS sing 94 n n C1 H13 DMS sing 95 n n C2 H21 DMS sing 96 n n C2 H22 DMS sing 97 n n C2 H23 DMS sing 98 n n # _atom_sites.entry_id 2AVO _atom_sites.fract_transf_matrix[1][1] 0.019431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 501 SO4 SO4 . D 3 DMS A 1 401 401 DMS DMS . E 4 MK1 B 1 902 902 MK1 MK1 . F 5 ACY B 1 601 601 ACY ACY . G 5 ACY B 1 604 604 ACY ACY . H 6 GOL B 1 801 801 GOL GOL . I 7 HOH A 1 1001 1001 HOH HOH . I 7 HOH A 2 1005 1005 HOH HOH . I 7 HOH A 3 1008 1008 HOH HOH . I 7 HOH A 4 1009 1009 HOH HOH . I 7 HOH A 5 1010 1010 HOH HOH . I 7 HOH A 6 1012 1012 HOH HOH . I 7 HOH A 7 1013 1013 HOH HOH . I 7 HOH A 8 1014 1014 HOH HOH . I 7 HOH A 9 1018 1018 HOH HOH . I 7 HOH A 10 1020 1020 HOH HOH . I 7 HOH A 11 1021 1021 HOH HOH . I 7 HOH A 12 1022 1022 HOH HOH . I 7 HOH A 13 1023 1023 HOH HOH . I 7 HOH A 14 1024 1024 HOH HOH . I 7 HOH A 15 1026 1026 HOH HOH . I 7 HOH A 16 1027 1027 HOH HOH . I 7 HOH A 17 1030 1030 HOH HOH . I 7 HOH A 18 1033 1033 HOH HOH . I 7 HOH A 19 1034 1034 HOH HOH . I 7 HOH A 20 1036 1036 HOH HOH . I 7 HOH A 21 1039 1039 HOH HOH . I 7 HOH A 22 1042 1042 HOH HOH . I 7 HOH A 23 1044 1044 HOH HOH . I 7 HOH A 24 1045 1045 HOH HOH . I 7 HOH A 25 1046 1046 HOH HOH . I 7 HOH A 26 1047 1047 HOH HOH . I 7 HOH A 27 1048 1048 HOH HOH . I 7 HOH A 28 1052 1052 HOH HOH . I 7 HOH A 29 1053 1053 HOH HOH . I 7 HOH A 30 1056 1056 HOH HOH . I 7 HOH A 31 1061 1061 HOH HOH . I 7 HOH A 32 1062 1062 HOH HOH . I 7 HOH A 33 1063 1063 HOH HOH . I 7 HOH A 34 1064 1064 HOH HOH . I 7 HOH A 35 1065 1065 HOH HOH . I 7 HOH A 36 1066 1066 HOH HOH . I 7 HOH A 37 1067 1067 HOH HOH . I 7 HOH A 38 1068 1068 HOH HOH . I 7 HOH A 39 1072 1072 HOH HOH . I 7 HOH A 40 1074 1074 HOH HOH . I 7 HOH A 41 1076 1076 HOH HOH . I 7 HOH A 42 1077 1077 HOH HOH . I 7 HOH A 43 1080 1080 HOH HOH . I 7 HOH A 44 1081 1081 HOH HOH . I 7 HOH A 45 1083 1083 HOH HOH . I 7 HOH A 46 1090 1090 HOH HOH . I 7 HOH A 47 1092 1092 HOH HOH . I 7 HOH A 48 1093 1093 HOH HOH . I 7 HOH A 49 1094 1094 HOH HOH . I 7 HOH A 50 1097 1097 HOH HOH . I 7 HOH A 51 1099 1099 HOH HOH . I 7 HOH A 52 1100 1100 HOH HOH . I 7 HOH A 53 1101 1101 HOH HOH . I 7 HOH A 54 1103 1103 HOH HOH . I 7 HOH A 55 1104 1104 HOH HOH . I 7 HOH A 56 1108 1108 HOH HOH . I 7 HOH A 57 1109 1109 HOH HOH . I 7 HOH A 58 1111 1111 HOH HOH . I 7 HOH A 59 1113 1113 HOH HOH . I 7 HOH A 60 1115 1115 HOH HOH . I 7 HOH A 61 1116 1116 HOH HOH . I 7 HOH A 62 1119 1119 HOH HOH . I 7 HOH A 63 1121 1121 HOH HOH . I 7 HOH A 64 1127 1127 HOH HOH . I 7 HOH A 65 1128 1128 HOH HOH . I 7 HOH A 66 1129 1129 HOH HOH . I 7 HOH A 67 1130 1130 HOH HOH . I 7 HOH A 68 1131 1131 HOH HOH . I 7 HOH A 69 1133 1133 HOH HOH . I 7 HOH A 70 1134 1134 HOH HOH . I 7 HOH A 71 1140 1140 HOH HOH . I 7 HOH A 72 1141 1141 HOH HOH . I 7 HOH A 73 1143 1143 HOH HOH . I 7 HOH A 74 1144 1144 HOH HOH . I 7 HOH A 75 1145 1145 HOH HOH . I 7 HOH A 76 1147 1147 HOH HOH . I 7 HOH A 77 1148 1148 HOH HOH . I 7 HOH A 78 1149 1149 HOH HOH . I 7 HOH A 79 1152 1152 HOH HOH . I 7 HOH A 80 1154 1154 HOH HOH . I 7 HOH A 81 1156 1156 HOH HOH . I 7 HOH A 82 1157 1157 HOH HOH . I 7 HOH A 83 1160 1160 HOH HOH . I 7 HOH A 84 1162 1162 HOH HOH . I 7 HOH A 85 1164 1164 HOH HOH . I 7 HOH A 86 1165 1165 HOH HOH . I 7 HOH A 87 1167 1167 HOH HOH . I 7 HOH A 88 1169 1169 HOH HOH . I 7 HOH A 89 1172 1172 HOH HOH . I 7 HOH A 90 1173 1173 HOH HOH . I 7 HOH A 91 1177 1177 HOH HOH . I 7 HOH A 92 1178 1178 HOH HOH . I 7 HOH A 93 1179 1179 HOH HOH . I 7 HOH A 94 1180 1180 HOH HOH . I 7 HOH A 95 1183 1183 HOH HOH . I 7 HOH A 96 1187 1187 HOH HOH . I 7 HOH A 97 1190 1190 HOH HOH . I 7 HOH A 98 1191 1191 HOH HOH . I 7 HOH A 99 1192 1192 HOH HOH . I 7 HOH A 100 1194 1194 HOH HOH . I 7 HOH A 101 1195 1195 HOH HOH . I 7 HOH A 102 1197 1197 HOH HOH . I 7 HOH A 103 1198 1198 HOH HOH . I 7 HOH A 104 1200 1200 HOH HOH . I 7 HOH A 105 1201 1201 HOH HOH . I 7 HOH A 106 1202 1202 HOH HOH . I 7 HOH A 107 1206 1206 HOH HOH . I 7 HOH A 108 1208 1208 HOH HOH . I 7 HOH A 109 1209 1209 HOH HOH . I 7 HOH A 110 1210 1210 HOH HOH . I 7 HOH A 111 1212 1212 HOH HOH . I 7 HOH A 112 1213 1213 HOH HOH . I 7 HOH A 113 1214 1214 HOH HOH . I 7 HOH A 114 1216 1216 HOH HOH . I 7 HOH A 115 1221 1221 HOH HOH . I 7 HOH A 116 1222 1222 HOH HOH . I 7 HOH A 117 1223 1223 HOH HOH . I 7 HOH A 118 1225 1225 HOH HOH . I 7 HOH A 119 1227 1227 HOH HOH . I 7 HOH A 120 1229 1229 HOH HOH . I 7 HOH A 121 1235 1235 HOH HOH . I 7 HOH A 122 1236 1236 HOH HOH . I 7 HOH A 123 1238 1238 HOH HOH . I 7 HOH A 124 1240 1240 HOH HOH . I 7 HOH A 125 1241 1241 HOH HOH . I 7 HOH A 126 1242 1242 HOH HOH . I 7 HOH A 127 1243 1243 HOH HOH . I 7 HOH A 128 1244 1244 HOH HOH . I 7 HOH A 129 1245 1245 HOH HOH . I 7 HOH A 130 1246 1246 HOH HOH . I 7 HOH A 131 1250 1250 HOH HOH . I 7 HOH A 132 1254 1254 HOH HOH . I 7 HOH A 133 1256 1256 HOH HOH . I 7 HOH A 134 1259 1259 HOH HOH . I 7 HOH A 135 1260 1260 HOH HOH . I 7 HOH A 136 1261 1261 HOH HOH . I 7 HOH A 137 1263 1263 HOH HOH . I 7 HOH A 138 1264 1264 HOH HOH . J 7 HOH B 1 1002 1002 HOH HOH . J 7 HOH B 2 1003 1003 HOH HOH . J 7 HOH B 3 1004 1004 HOH HOH . J 7 HOH B 4 1006 1006 HOH HOH . J 7 HOH B 5 1007 1007 HOH HOH . J 7 HOH B 6 1011 1011 HOH HOH . J 7 HOH B 7 1015 1015 HOH HOH . J 7 HOH B 8 1016 1016 HOH HOH . J 7 HOH B 9 1017 1017 HOH HOH . J 7 HOH B 10 1019 1019 HOH HOH . J 7 HOH B 11 1025 1025 HOH HOH . J 7 HOH B 12 1028 1028 HOH HOH . J 7 HOH B 13 1029 1029 HOH HOH . J 7 HOH B 14 1031 1031 HOH HOH . J 7 HOH B 15 1032 1032 HOH HOH . J 7 HOH B 16 1035 1035 HOH HOH . J 7 HOH B 17 1037 1037 HOH HOH . J 7 HOH B 18 1038 1038 HOH HOH . J 7 HOH B 19 1040 1040 HOH HOH . J 7 HOH B 20 1041 1041 HOH HOH . J 7 HOH B 21 1043 1043 HOH HOH . J 7 HOH B 22 1049 1049 HOH HOH . J 7 HOH B 23 1050 1050 HOH HOH . J 7 HOH B 24 1051 1051 HOH HOH . J 7 HOH B 25 1054 1054 HOH HOH . J 7 HOH B 26 1055 1055 HOH HOH . J 7 HOH B 27 1057 1057 HOH HOH . J 7 HOH B 28 1058 1058 HOH HOH . J 7 HOH B 29 1059 1059 HOH HOH . J 7 HOH B 30 1060 1060 HOH HOH . J 7 HOH B 31 1069 1069 HOH HOH . J 7 HOH B 32 1070 1070 HOH HOH . J 7 HOH B 33 1071 1071 HOH HOH . J 7 HOH B 34 1073 1073 HOH HOH . J 7 HOH B 35 1075 1075 HOH HOH . J 7 HOH B 36 1078 1078 HOH HOH . J 7 HOH B 37 1079 1079 HOH HOH . J 7 HOH B 38 1082 1082 HOH HOH . J 7 HOH B 39 1084 1084 HOH HOH . J 7 HOH B 40 1085 1085 HOH HOH . J 7 HOH B 41 1086 1086 HOH HOH . J 7 HOH B 42 1087 1087 HOH HOH . J 7 HOH B 43 1088 1088 HOH HOH . J 7 HOH B 44 1089 1089 HOH HOH . J 7 HOH B 45 1091 1091 HOH HOH . J 7 HOH B 46 1095 1095 HOH HOH . J 7 HOH B 47 1096 1096 HOH HOH . J 7 HOH B 48 1098 1098 HOH HOH . J 7 HOH B 49 1102 1102 HOH HOH . J 7 HOH B 50 1105 1105 HOH HOH . J 7 HOH B 51 1106 1106 HOH HOH . J 7 HOH B 52 1107 1107 HOH HOH . J 7 HOH B 53 1110 1110 HOH HOH . J 7 HOH B 54 1112 1112 HOH HOH . J 7 HOH B 55 1114 1114 HOH HOH . J 7 HOH B 56 1117 1117 HOH HOH . J 7 HOH B 57 1118 1118 HOH HOH . J 7 HOH B 58 1120 1120 HOH HOH . J 7 HOH B 59 1122 1122 HOH HOH . J 7 HOH B 60 1123 1123 HOH HOH . J 7 HOH B 61 1124 1124 HOH HOH . J 7 HOH B 62 1125 1125 HOH HOH . J 7 HOH B 63 1126 1126 HOH HOH . J 7 HOH B 64 1132 1132 HOH HOH . J 7 HOH B 65 1135 1135 HOH HOH . J 7 HOH B 66 1136 1136 HOH HOH . J 7 HOH B 67 1137 1137 HOH HOH . J 7 HOH B 68 1138 1138 HOH HOH . J 7 HOH B 69 1139 1139 HOH HOH . J 7 HOH B 70 1142 1142 HOH HOH . J 7 HOH B 71 1146 1146 HOH HOH . J 7 HOH B 72 1150 1150 HOH HOH . J 7 HOH B 73 1151 1151 HOH HOH . J 7 HOH B 74 1153 1153 HOH HOH . J 7 HOH B 75 1155 1155 HOH HOH . J 7 HOH B 76 1158 1158 HOH HOH . J 7 HOH B 77 1159 1159 HOH HOH . J 7 HOH B 78 1161 1161 HOH HOH . J 7 HOH B 79 1163 1163 HOH HOH . J 7 HOH B 80 1166 1166 HOH HOH . J 7 HOH B 81 1168 1168 HOH HOH . J 7 HOH B 82 1170 1170 HOH HOH . J 7 HOH B 83 1171 1171 HOH HOH . J 7 HOH B 84 1174 1174 HOH HOH . J 7 HOH B 85 1175 1175 HOH HOH . J 7 HOH B 86 1176 1176 HOH HOH . J 7 HOH B 87 1181 1181 HOH HOH . J 7 HOH B 88 1182 1182 HOH HOH . J 7 HOH B 89 1184 1184 HOH HOH . J 7 HOH B 90 1185 1185 HOH HOH . J 7 HOH B 91 1186 1186 HOH HOH . J 7 HOH B 92 1188 1188 HOH HOH . J 7 HOH B 93 1189 1189 HOH HOH . J 7 HOH B 94 1193 1193 HOH HOH . J 7 HOH B 95 1196 1196 HOH HOH . J 7 HOH B 96 1199 1199 HOH HOH . J 7 HOH B 97 1203 1203 HOH HOH . J 7 HOH B 98 1204 1204 HOH HOH . J 7 HOH B 99 1205 1205 HOH HOH . J 7 HOH B 100 1207 1207 HOH HOH . J 7 HOH B 101 1211 1211 HOH HOH . J 7 HOH B 102 1215 1215 HOH HOH . J 7 HOH B 103 1217 1217 HOH HOH . J 7 HOH B 104 1218 1218 HOH HOH . J 7 HOH B 105 1219 1219 HOH HOH . J 7 HOH B 106 1220 1220 HOH HOH . J 7 HOH B 107 1224 1224 HOH HOH . J 7 HOH B 108 1226 1226 HOH HOH . J 7 HOH B 109 1228 1228 HOH HOH . J 7 HOH B 110 1230 1230 HOH HOH . J 7 HOH B 111 1231 1231 HOH HOH . J 7 HOH B 112 1232 1232 HOH HOH . J 7 HOH B 113 1233 1233 HOH HOH . J 7 HOH B 114 1234 1234 HOH HOH . J 7 HOH B 115 1237 1237 HOH HOH . J 7 HOH B 116 1239 1239 HOH HOH . J 7 HOH B 117 1247 1247 HOH HOH . J 7 HOH B 118 1248 1248 HOH HOH . J 7 HOH B 119 1249 1249 HOH HOH . J 7 HOH B 120 1251 1251 HOH HOH . J 7 HOH B 121 1252 1252 HOH HOH . J 7 HOH B 122 1253 1253 HOH HOH . J 7 HOH B 123 1255 1255 HOH HOH . J 7 HOH B 124 1257 1257 HOH HOH . J 7 HOH B 125 1258 1258 HOH HOH . J 7 HOH B 126 1262 1262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 26.579 12.698 13.864 0.5 55.79 ? S DMS 401 A 1 HETATM 2 O O DMS . . . D 3 25.251 12.066 14.102 0.5 56.18 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . D 3 26.408 13.544 12.31 0.5 35.02 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . D 3 26.459 14.159 14.838 0.5 38.49 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #