data_2AVP # _model_server_result.job_id JCf9OA24-OV6QRYPI9DLdQ _model_server_result.datetime_utc '2024-10-25 20:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2avp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":102}' # _entry.id 2AVP # _exptl.entry_id 2AVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AVP _cell.length_a 54.245 _cell.length_b 54.245 _cell.length_c 71.782 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_654 -x+1,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 54.245 0 -35.891 3 'crystal symmetry operation' 3_544 -y+1/2,x-1/2,z-3/4 0 -1 0 1 0 0 0 0 1 27.1225 -27.1225 -53.8365 4 'crystal symmetry operation' 4_554 y+1/2,-x+1/2,z-1/4 0 1 0 -1 0 0 0 0 1 27.1225 27.1225 -17.9455 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 18 1_555 B CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 A OD2 ASP 20 A ASP 18 1_555 B CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 A OE1 GLU 21 A GLU 19 1_555 B CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc4 A OE2 GLU 21 A GLU 19 1_555 B CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc5 A OD1 ASP 52 A ASP 50 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc6 A OD2 ASP 52 A ASP 50 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc7 A OD1 ASP 52 A ASP 50 7_557 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 A OD2 ASP 52 A ASP 50 7_557 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc9 A OE1 GLU 55 A GLU 53 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc10 A OE1 GLU 55 A GLU 53 7_557 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc11 A OE2 GLU 65 A GLU 63 6_556 B CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc12 A OE1 GLU 65 A GLU 63 6_556 B CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc13 B CD CD . A CD 102 1_555 D O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc14 B CD CD . A CD 102 1_555 D O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2AVP _atom_sites.fract_transf_matrix[1][1] 0.018435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 102 102 CD CD . C 2 CD A 1 202 202 CD CD . D 3 HOH A 1 203 1 HOH HOH . D 3 HOH A 2 204 2 HOH HOH . D 3 HOH A 3 205 6 HOH HOH . D 3 HOH A 4 206 7 HOH HOH . D 3 HOH A 5 207 11 HOH HOH . D 3 HOH A 6 208 12 HOH HOH . D 3 HOH A 7 209 13 HOH HOH . D 3 HOH A 8 210 22 HOH HOH . D 3 HOH A 9 211 23 HOH HOH . D 3 HOH A 10 212 30 HOH HOH . D 3 HOH A 11 213 34 HOH HOH . D 3 HOH A 12 214 37 HOH HOH . D 3 HOH A 13 215 38 HOH HOH . D 3 HOH A 14 216 41 HOH HOH . D 3 HOH A 15 217 42 HOH HOH . D 3 HOH A 16 218 47 HOH HOH . D 3 HOH A 17 219 53 HOH HOH . D 3 HOH A 18 220 56 HOH HOH . D 3 HOH A 19 221 57 HOH HOH . D 3 HOH A 20 222 58 HOH HOH . D 3 HOH A 21 223 59 HOH HOH . D 3 HOH A 22 224 61 HOH HOH . D 3 HOH A 23 225 64 HOH HOH . D 3 HOH A 24 226 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 32.204 _atom_site.Cartn_y 19.123 _atom_site.Cartn_z 62.899 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #