data_2AW2 # _model_server_result.job_id fI_7esOMV9PYyBt0gJdSGQ _model_server_result.datetime_utc '2024-10-13 13:12:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 2AW2 # _exptl.entry_id 2AW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AW2 _cell.length_a 49.294 _cell.length_b 167.116 _cell.length_c 148.68 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I 1 1 C,D,F,J 2 1 A,B,E,G,H,I 3 1 C,D,F,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 24.647 -83.558 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG B 201 NAG 3 n E NAG 2 C 2 NAG B 202 NAG 4 n F NAG 1 D 1 NAG Y 201 NAG 4 n F FUL 2 D 2 FUL Y 202 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 34 1_555 A SG CYS 38 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 33 A CYS 58 1_555 A SG CYS 90 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 47 A CYS 72 1_555 A SG CYS 54 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 8 B CYS 4 1_555 B SG CYS 19 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 20 B CYS 16 1_555 B SG CYS 33 B CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf6 B SG CYS 23 B CYS 19 1_555 B SG CYS 41 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 B SG CYS 44 B CYS 40 1_555 B SG CYS 59 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 B SG CYS 62 B CYS 58 1_555 B SG CYS 77 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 65 B CYS 61 1_555 B SG CYS 85 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 B SG CYS 87 B CYS 83 1_555 B SG CYS 104 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 93 B CYS 89 1_555 B SG CYS 101 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 C SG CYS 9 X CYS 34 1_555 C SG CYS 38 X CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf13 C SG CYS 33 X CYS 58 1_555 C SG CYS 90 X CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 C SG CYS 47 X CYS 72 1_555 C SG CYS 54 X CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 D SG CYS 8 Y CYS 4 1_555 D SG CYS 19 Y CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf16 D SG CYS 20 Y CYS 16 1_555 D SG CYS 33 Y CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf17 D SG CYS 23 Y CYS 19 1_555 D SG CYS 41 Y CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 D SG CYS 44 Y CYS 40 1_555 D SG CYS 59 Y CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf19 D SG CYS 62 Y CYS 58 1_555 D SG CYS 77 Y CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 D SG CYS 65 Y CYS 61 1_555 D SG CYS 85 Y CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf21 D SG CYS 87 Y CYS 83 1_555 D SG CYS 104 Y CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf22 D SG CYS 93 Y CYS 89 1_555 D SG CYS 101 Y CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 76 B ASN 72 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 D ND2 ASN 76 Y ASN 72 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 F O6 NAG . D NAG 1 1_555 F C1 FUL . D FUL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 G NI NI . A NI 1 1_555 A NE2 HIS 114 A HIS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 G NI NI . A NI 1 1_555 A NE2 HIS 114 A HIS 139 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 G NI NI . A NI 1 1_555 A NE2 HIS 116 A HIS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc4 G NI NI . A NI 1 1_555 A NE2 HIS 116 A HIS 141 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2AW2 _atom_sites.fract_transf_matrix[1][1] 0.020286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NI A 1 1 1 NI NI . H 6 HOH A 1 2 2 HOH HOH . H 6 HOH A 2 3 3 HOH HOH . I 6 HOH B 1 203 5 HOH HOH . J 6 HOH X 1 4 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 0.073 _atom_site.Cartn_y 15.549 _atom_site.Cartn_z 37.087 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 62.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #