data_2AWO # _model_server_result.job_id SxSgpAzeeDAMFRTVdscI-w _model_server_result.datetime_utc '2024-10-19 11:44:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2awo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 2AWO # _exptl.entry_id 2AWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.73 _cell.angle_gamma 90 _cell.entry_id 2AWO _cell.length_a 70.213 _cell.length_b 101.975 _cell.length_c 131.503 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 43 A SER 43 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 F O2B ADP . A ADP 401 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc3 B OG SER 43 B SER 43 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 H O2B ADP . B ADP 402 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 C OG SER 43 C SER 43 1_555 I MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 D OG SER 43 D SER 43 1_555 K MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc7 L O2B ADP . D ADP 404 1_555 K MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2AWO _atom_sites.fract_transf_matrix[1][1] 0.014242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000182 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 502 502 MG MG . F 3 ADP A 1 401 401 ADP ADP . G 2 MG B 1 501 501 MG MG . H 3 ADP B 1 402 402 ADP ADP . I 2 MG C 1 503 503 MG MG . J 3 ADP C 1 403 403 ADP ADP . K 2 MG D 1 504 504 MG MG . L 3 ADP D 1 404 404 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 3 24.51 -9.096 18.374 1 44.85 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . F 3 24.466 -8.42 17.037 1 38.47 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . F 3 24.789 -8.101 19.551 1 42.22 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . F 3 23.349 -9.961 18.693 1 41.02 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . F 3 27.021 -10.168 19.168 1 54.42 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . F 3 26.88 -11.018 20.377 1 55.7 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . F 3 28.27 -9.771 18.44 1 55.42 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . F 3 25.735 -10.106 18.286 1 49.93 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . F 3 27.126 -11.688 18.602 1 59.43 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . F 3 27.336 -12.021 17.179 1 68.39 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . F 3 27.859 -13.452 16.866 1 74.03 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . F 3 29.195 -13.679 17.375 1 76.69 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . F 3 27.014 -14.634 17.379 1 77.69 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . F 3 26.311 -15.146 16.229 1 79.52 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . F 3 28.011 -15.63 17.991 1 79.2 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . F 3 28.135 -16.829 17.216 1 81.08 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . F 3 29.356 -14.934 18.011 1 79.69 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . F 3 29.911 -14.756 19.4 1 81.52 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . F 3 29.711 -13.716 20.25 1 83.19 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . F 3 30.361 -13.852 21.421 1 82.87 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . F 3 31.003 -15.041 21.294 1 83.25 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . F 3 31.878 -15.755 22.205 1 83.88 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . F 3 32.23 -15.363 23.38 1 84.33 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . F 3 32.345 -16.963 21.703 1 83.73 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . F 3 32.011 -17.454 20.441 1 82.71 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . F 3 31.209 -16.805 19.592 1 81.85 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . F 3 30.735 -15.622 20.05 1 82.43 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #