data_2AWO
#
_model_server_result.job_id            VZCCR-BlIQdDe-pDZOjCvg 
_model_server_result.datetime_utc      '2024-10-19 11:52:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2awo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":403}' 
#
_entry.id    2AWO 
#
_exptl.entry_id    2AWO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.73 
_cell.angle_gamma         90 
_cell.entry_id            2AWO 
_cell.length_a            70.213 
_cell.length_b            101.975 
_cell.length_c            131.503 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AWO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 43 A SER 43 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc2 F O2B ADP . A ADP 401 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc3 B OG SER 43 B SER 43 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc4 H O2B ADP . B ADP 402 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc5 C OG SER 43 C SER 43 1_555 I MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc6 D OG SER 43 D SER 43 1_555 K MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc7 L O2B ADP . D ADP 404 1_555 K MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2AWO 
_atom_sites.fract_transf_matrix[1][1]    0.014242 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000182 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 502 502 MG MG . 
F 3 ADP A 1 401 401 ADP ADP . 
G 2 MG B 1 501 501 MG MG . 
H 3 ADP B 1 402 402 ADP ADP . 
I 2 MG C 1 503 503 MG MG . 
J 3 ADP C 1 403 403 ADP ADP . 
K 2 MG D 1 504 504 MG MG . 
L 3 ADP D 1 404 404 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . J 3 23.941 31.138 61.157 1 49.43 ? PB ADP 403 C 1 
HETATM 2 O O1B ADP . . . J 3 24.759 31.168 59.908 1 47.45 ? O1B ADP 403 C 1 
HETATM 3 O O2B ADP . . . J 3 24.326 32.29 62.146 1 49.94 ? O2B ADP 403 C 1 
HETATM 4 O O3B ADP . . . J 3 22.479 31.097 60.922 1 44.6 ? O3B ADP 403 C 1 
HETATM 5 P PA ADP . . . J 3 24.907 29.453 63.286 1 60.12 ? PA ADP 403 C 1 
HETATM 6 O O1A ADP . . . J 3 23.9 29.062 64.334 1 58.62 ? O1A ADP 403 C 1 
HETATM 7 O O2A ADP . . . J 3 26.365 29.141 63.268 1 58.01 ? O2A ADP 403 C 1 
HETATM 8 O O3A ADP . . . J 3 24.287 29.747 61.86 1 58.06 ? O3A ADP 403 C 1 
HETATM 9 O O5' ADP . . . J 3 24.551 27.911 62.924 1 66.23 ? O5' ADP 403 C 1 
HETATM 10 C C5' ADP . . . J 3 25.155 27.166 61.795 1 76.02 ? C5' ADP 403 C 1 
HETATM 11 C C4' ADP . . . J 3 24.766 25.675 61.713 1 82.12 ? C4' ADP 403 C 1 
HETATM 12 O O4' ADP . . . J 3 25.454 24.926 62.751 1 85.22 ? O4' ADP 403 C 1 
HETATM 13 C C3' ADP . . . J 3 23.284 25.323 61.931 1 86.55 ? C3' ADP 403 C 1 
HETATM 14 O O3' ADP . . . J 3 22.589 25.505 60.677 1 87.34 ? O3' ADP 403 C 1 
HETATM 15 C C2' ADP . . . J 3 23.364 23.88 62.455 1 87.48 ? C2' ADP 403 C 1 
HETATM 16 O O2' ADP . . . J 3 23.381 22.888 61.417 1 90.7 ? O2' ADP 403 C 1 
HETATM 17 C C1' ADP . . . J 3 24.679 23.827 63.235 1 88.36 ? C1' ADP 403 C 1 
HETATM 18 N N9 ADP . . . J 3 24.455 23.944 64.735 1 90.97 ? N9 ADP 403 C 1 
HETATM 19 C C8 ADP . . . J 3 24.387 25.078 65.485 1 92.78 ? C8 ADP 403 C 1 
HETATM 20 N N7 ADP . . . J 3 24.18 24.838 66.794 1 93.73 ? N7 ADP 403 C 1 
HETATM 21 C C5 ADP . . . J 3 24.115 23.483 66.871 1 92.95 ? C5 ADP 403 C 1 
HETATM 22 C C6 ADP . . . J 3 23.909 22.598 68.004 1 93.23 ? C6 ADP 403 C 1 
HETATM 23 N N6 ADP . . . J 3 23.74 22.96 69.224 1 92.99 ? N6 ADP 403 C 1 
HETATM 24 N N1 ADP . . . J 3 23.906 21.249 67.675 1 93.81 ? N1 ADP 403 C 1 
HETATM 25 C C2 ADP . . . J 3 24.082 20.771 66.378 1 93.63 ? C2 ADP 403 C 1 
HETATM 26 N N3 ADP . . . J 3 24.272 21.573 65.325 1 92.52 ? N3 ADP 403 C 1 
HETATM 27 C C4 ADP . . . J 3 24.281 22.904 65.61 1 92.45 ? C4 ADP 403 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#