data_2AX3 # _model_server_result.job_id 9bVrvHE5u1j8PCz6H9NShQ _model_server_result.datetime_utc '2024-11-12 21:27:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ax3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":491}' # _entry.id 2AX3 # _exptl.entry_id 2AX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AX3 _cell.length_a 121.264 _cell.length_b 121.264 _cell.length_c 153.873 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexadecameric 16 author_and_software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2,3,4,5,6,7,8 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 12 A HIS 0 1_555 A N MSE 13 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 13 A MSE 1 1_555 A N LYS 14 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LEU 31 A LEU 19 1_555 A N MSE 32 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 32 A MSE 20 1_555 A N GLU 33 A GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C ALA 42 A ALA 30 1_555 A N MSE 43 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 43 A MSE 31 1_555 A N GLU 44 A GLU 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale7 A C GLU 226 A GLU 214 1_555 A N MSE 227 A MSE 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale8 A C MSE 227 A MSE 215 1_555 A N VAL 228 A VAL 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 A C GLY 264 A GLY 252 1_555 A N MSE 265 A MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale10 A C MSE 265 A MSE 253 1_555 A N GLY 266 A GLY 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 A C GLU 381 A GLU 369 1_555 A N MSE 382 A MSE 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C MSE 382 A MSE 370 1_555 A N ALA 383 A ALA 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 A C GLY 447 A GLY 435 1_555 A N MSE 448 A MSE 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale14 A C MSE 448 A MSE 436 1_555 A N ILE 449 A ILE 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2AX3 _atom_sites.fract_transf_matrix[1][1] 0.00825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 491 1 GOL GOL . D 4 HOH A 1 492 2 HOH HOH . D 4 HOH A 2 493 3 HOH HOH . D 4 HOH A 3 494 4 HOH HOH . D 4 HOH A 4 495 5 HOH HOH . D 4 HOH A 5 496 6 HOH HOH . D 4 HOH A 6 497 7 HOH HOH . D 4 HOH A 7 498 8 HOH HOH . D 4 HOH A 8 499 9 HOH HOH . D 4 HOH A 9 500 10 HOH HOH . D 4 HOH A 10 501 11 HOH HOH . D 4 HOH A 11 502 12 HOH HOH . D 4 HOH A 12 503 13 HOH HOH . D 4 HOH A 13 504 14 HOH HOH . D 4 HOH A 14 505 15 HOH HOH . D 4 HOH A 15 506 16 HOH HOH . D 4 HOH A 16 507 17 HOH HOH . D 4 HOH A 17 508 18 HOH HOH . D 4 HOH A 18 509 19 HOH HOH . D 4 HOH A 19 510 20 HOH HOH . D 4 HOH A 20 511 21 HOH HOH . D 4 HOH A 21 512 22 HOH HOH . D 4 HOH A 22 513 23 HOH HOH . D 4 HOH A 23 514 24 HOH HOH . D 4 HOH A 24 515 25 HOH HOH . D 4 HOH A 25 516 26 HOH HOH . D 4 HOH A 26 517 27 HOH HOH . D 4 HOH A 27 518 28 HOH HOH . D 4 HOH A 28 519 29 HOH HOH . D 4 HOH A 29 520 30 HOH HOH . D 4 HOH A 30 521 31 HOH HOH . D 4 HOH A 31 522 32 HOH HOH . D 4 HOH A 32 523 33 HOH HOH . D 4 HOH A 33 524 34 HOH HOH . D 4 HOH A 34 525 35 HOH HOH . D 4 HOH A 35 526 36 HOH HOH . D 4 HOH A 36 527 37 HOH HOH . D 4 HOH A 37 528 38 HOH HOH . D 4 HOH A 38 529 39 HOH HOH . D 4 HOH A 39 530 40 HOH HOH . D 4 HOH A 40 531 41 HOH HOH . D 4 HOH A 41 532 42 HOH HOH . D 4 HOH A 42 533 43 HOH HOH . D 4 HOH A 43 534 44 HOH HOH . D 4 HOH A 44 535 45 HOH HOH . D 4 HOH A 45 536 46 HOH HOH . D 4 HOH A 46 537 47 HOH HOH . D 4 HOH A 47 538 48 HOH HOH . D 4 HOH A 48 539 49 HOH HOH . D 4 HOH A 49 540 50 HOH HOH . D 4 HOH A 50 541 51 HOH HOH . D 4 HOH A 51 542 52 HOH HOH . D 4 HOH A 52 543 53 HOH HOH . D 4 HOH A 53 544 54 HOH HOH . D 4 HOH A 54 545 55 HOH HOH . D 4 HOH A 55 546 56 HOH HOH . D 4 HOH A 56 547 57 HOH HOH . D 4 HOH A 57 548 58 HOH HOH . D 4 HOH A 58 549 59 HOH HOH . D 4 HOH A 59 550 60 HOH HOH . D 4 HOH A 60 551 61 HOH HOH . D 4 HOH A 61 552 62 HOH HOH . D 4 HOH A 62 553 63 HOH HOH . D 4 HOH A 63 554 64 HOH HOH . D 4 HOH A 64 555 65 HOH HOH . D 4 HOH A 65 556 66 HOH HOH . D 4 HOH A 66 557 67 HOH HOH . D 4 HOH A 67 558 68 HOH HOH . D 4 HOH A 68 559 69 HOH HOH . D 4 HOH A 69 560 70 HOH HOH . D 4 HOH A 70 561 71 HOH HOH . D 4 HOH A 71 562 72 HOH HOH . D 4 HOH A 72 563 73 HOH HOH . D 4 HOH A 73 564 74 HOH HOH . D 4 HOH A 74 565 75 HOH HOH . D 4 HOH A 75 566 76 HOH HOH . D 4 HOH A 76 567 77 HOH HOH . D 4 HOH A 77 568 78 HOH HOH . D 4 HOH A 78 569 79 HOH HOH . D 4 HOH A 79 570 80 HOH HOH . D 4 HOH A 80 571 81 HOH HOH . D 4 HOH A 81 572 82 HOH HOH . D 4 HOH A 82 573 83 HOH HOH . D 4 HOH A 83 574 84 HOH HOH . D 4 HOH A 84 575 85 HOH HOH . D 4 HOH A 85 576 86 HOH HOH . D 4 HOH A 86 577 87 HOH HOH . D 4 HOH A 87 578 88 HOH HOH . D 4 HOH A 88 579 89 HOH HOH . D 4 HOH A 89 580 90 HOH HOH . D 4 HOH A 90 581 91 HOH HOH . D 4 HOH A 91 582 92 HOH HOH . D 4 HOH A 92 583 93 HOH HOH . D 4 HOH A 93 584 94 HOH HOH . D 4 HOH A 94 585 95 HOH HOH . D 4 HOH A 95 586 96 HOH HOH . D 4 HOH A 96 587 97 HOH HOH . D 4 HOH A 97 588 98 HOH HOH . D 4 HOH A 98 589 99 HOH HOH . D 4 HOH A 99 590 100 HOH HOH . D 4 HOH A 100 591 102 HOH HOH . D 4 HOH A 101 592 103 HOH HOH . D 4 HOH A 102 593 104 HOH HOH . D 4 HOH A 103 594 105 HOH HOH . D 4 HOH A 104 595 106 HOH HOH . D 4 HOH A 105 596 107 HOH HOH . D 4 HOH A 106 597 109 HOH HOH . D 4 HOH A 107 598 110 HOH HOH . D 4 HOH A 108 599 111 HOH HOH . D 4 HOH A 109 600 112 HOH HOH . D 4 HOH A 110 601 113 HOH HOH . D 4 HOH A 111 602 114 HOH HOH . D 4 HOH A 112 603 115 HOH HOH . D 4 HOH A 113 604 116 HOH HOH . D 4 HOH A 114 605 117 HOH HOH . D 4 HOH A 115 606 118 HOH HOH . D 4 HOH A 116 607 119 HOH HOH . D 4 HOH A 117 608 120 HOH HOH . D 4 HOH A 118 609 121 HOH HOH . D 4 HOH A 119 610 122 HOH HOH . D 4 HOH A 120 611 123 HOH HOH . D 4 HOH A 121 612 124 HOH HOH . D 4 HOH A 122 613 125 HOH HOH . D 4 HOH A 123 614 126 HOH HOH . D 4 HOH A 124 615 127 HOH HOH . D 4 HOH A 125 616 128 HOH HOH . D 4 HOH A 126 617 129 HOH HOH . D 4 HOH A 127 618 130 HOH HOH . D 4 HOH A 128 619 131 HOH HOH . D 4 HOH A 129 620 132 HOH HOH . D 4 HOH A 130 621 133 HOH HOH . D 4 HOH A 131 622 134 HOH HOH . D 4 HOH A 132 623 135 HOH HOH . D 4 HOH A 133 624 136 HOH HOH . D 4 HOH A 134 625 137 HOH HOH . D 4 HOH A 135 626 138 HOH HOH . D 4 HOH A 136 627 139 HOH HOH . D 4 HOH A 137 628 140 HOH HOH . D 4 HOH A 138 629 141 HOH HOH . D 4 HOH A 139 630 142 HOH HOH . D 4 HOH A 140 631 143 HOH HOH . D 4 HOH A 141 632 144 HOH HOH . D 4 HOH A 142 633 145 HOH HOH . D 4 HOH A 143 634 146 HOH HOH . D 4 HOH A 144 635 147 HOH HOH . D 4 HOH A 145 636 148 HOH HOH . D 4 HOH A 146 637 149 HOH HOH . D 4 HOH A 147 638 150 HOH HOH . D 4 HOH A 148 639 151 HOH HOH . D 4 HOH A 149 640 152 HOH HOH . D 4 HOH A 150 641 153 HOH HOH . D 4 HOH A 151 642 154 HOH HOH . D 4 HOH A 152 643 155 HOH HOH . D 4 HOH A 153 644 156 HOH HOH . D 4 HOH A 154 645 157 HOH HOH . D 4 HOH A 155 646 158 HOH HOH . D 4 HOH A 156 647 159 HOH HOH . D 4 HOH A 157 648 160 HOH HOH . D 4 HOH A 158 649 161 HOH HOH . D 4 HOH A 159 650 162 HOH HOH . D 4 HOH A 160 651 163 HOH HOH . D 4 HOH A 161 652 164 HOH HOH . D 4 HOH A 162 653 165 HOH HOH . D 4 HOH A 163 654 166 HOH HOH . D 4 HOH A 164 655 167 HOH HOH . D 4 HOH A 165 656 168 HOH HOH . D 4 HOH A 166 657 169 HOH HOH . D 4 HOH A 167 658 170 HOH HOH . D 4 HOH A 168 659 171 HOH HOH . D 4 HOH A 169 660 172 HOH HOH . D 4 HOH A 170 661 173 HOH HOH . D 4 HOH A 171 662 174 HOH HOH . E 4 HOH B 1 108 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 49.763 3.579 10.219 1 72.49 ? C1 GOL 491 A 1 HETATM 2 O O1 GOL . . . C 3 50.131 4.68 9.396 1 76.25 ? O1 GOL 491 A 1 HETATM 3 C C2 GOL . . . C 3 48.347 3.773 10.745 1 69.33 ? C2 GOL 491 A 1 HETATM 4 O O2 GOL . . . C 3 47.958 5.09 10.451 1 72.4 ? O2 GOL 491 A 1 HETATM 5 C C3 GOL . . . C 3 48.213 3.578 12.258 1 76.01 ? C3 GOL 491 A 1 HETATM 6 O O3 GOL . . . C 3 47.839 2.254 12.623 1 76.11 ? O3 GOL 491 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #