data_2AY4 # _model_server_result.job_id 7NxVWoosXNCVFiM8kEwpYA _model_server_result.datetime_utc '2024-12-21 12:25:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ay4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":414}' # _entry.id 2AY4 # _exptl.entry_id 2AY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(P-TOLYL)PROPIONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AY4 _cell.length_a 124.2 _cell.length_b 121.79 _cell.length_c 55.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 243 A LYS 258 1_555 C C4A PLP . A PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale2 B NZ LYS 243 B LYS 258 1_555 D C4A PLP . B PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? # _chem_comp.formula 'C10 H12 O2' _chem_comp.formula_weight 164.201 _chem_comp.id PPT _chem_comp.mon_nstd_flag . _chem_comp.name '3-(P-TOLYL)PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2AY4 _atom_sites.fract_transf_matrix[1][1] 0.008052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 413 413 PLP PLP . D 2 PLP B 1 413 413 PLP PLP . E 3 PPT B 1 414 414 PPT PPT . F 4 HOH A 1 414 1 HOH HOH . F 4 HOH A 2 415 2 HOH HOH . F 4 HOH A 3 416 3 HOH HOH . F 4 HOH A 4 417 4 HOH HOH . F 4 HOH A 5 418 5 HOH HOH . F 4 HOH A 6 419 6 HOH HOH . F 4 HOH A 7 420 7 HOH HOH . F 4 HOH A 8 421 8 HOH HOH . F 4 HOH A 9 422 9 HOH HOH . F 4 HOH A 10 423 10 HOH HOH . F 4 HOH A 11 424 11 HOH HOH . F 4 HOH A 12 425 12 HOH HOH . F 4 HOH A 13 426 13 HOH HOH . F 4 HOH A 14 427 14 HOH HOH . F 4 HOH A 15 428 15 HOH HOH . F 4 HOH A 16 429 16 HOH HOH . F 4 HOH A 17 430 17 HOH HOH . F 4 HOH A 18 431 18 HOH HOH . F 4 HOH A 19 432 19 HOH HOH . F 4 HOH A 20 433 20 HOH HOH . F 4 HOH A 21 434 21 HOH HOH . F 4 HOH A 22 435 22 HOH HOH . F 4 HOH A 23 436 23 HOH HOH . F 4 HOH A 24 437 24 HOH HOH . F 4 HOH A 25 438 25 HOH HOH . F 4 HOH A 26 439 26 HOH HOH . F 4 HOH A 27 440 27 HOH HOH . F 4 HOH A 28 441 28 HOH HOH . F 4 HOH A 29 442 29 HOH HOH . F 4 HOH A 30 443 30 HOH HOH . F 4 HOH A 31 444 31 HOH HOH . F 4 HOH A 32 445 32 HOH HOH . F 4 HOH A 33 446 33 HOH HOH . F 4 HOH A 34 447 34 HOH HOH . F 4 HOH A 35 448 35 HOH HOH . F 4 HOH A 36 449 36 HOH HOH . F 4 HOH A 37 450 37 HOH HOH . F 4 HOH A 38 451 38 HOH HOH . F 4 HOH A 39 452 39 HOH HOH . F 4 HOH A 40 453 40 HOH HOH . F 4 HOH A 41 454 41 HOH HOH . F 4 HOH A 42 455 42 HOH HOH . F 4 HOH A 43 456 43 HOH HOH . F 4 HOH A 44 457 44 HOH HOH . F 4 HOH A 45 458 45 HOH HOH . F 4 HOH A 46 459 46 HOH HOH . F 4 HOH A 47 460 47 HOH HOH . F 4 HOH A 48 461 48 HOH HOH . F 4 HOH A 49 462 49 HOH HOH . F 4 HOH A 50 463 50 HOH HOH . F 4 HOH A 51 464 51 HOH HOH . F 4 HOH A 52 465 52 HOH HOH . F 4 HOH A 53 466 53 HOH HOH . F 4 HOH A 54 467 54 HOH HOH . F 4 HOH A 55 468 56 HOH HOH . F 4 HOH A 56 469 57 HOH HOH . F 4 HOH A 57 470 58 HOH HOH . F 4 HOH A 58 471 59 HOH HOH . F 4 HOH A 59 472 60 HOH HOH . F 4 HOH A 60 473 61 HOH HOH . F 4 HOH A 61 474 62 HOH HOH . F 4 HOH A 62 475 63 HOH HOH . F 4 HOH A 63 476 64 HOH HOH . F 4 HOH A 64 477 66 HOH HOH . F 4 HOH A 65 478 67 HOH HOH . F 4 HOH A 66 479 68 HOH HOH . F 4 HOH A 67 480 69 HOH HOH . F 4 HOH A 68 481 70 HOH HOH . F 4 HOH A 69 482 71 HOH HOH . F 4 HOH A 70 483 72 HOH HOH . F 4 HOH A 71 484 73 HOH HOH . F 4 HOH A 72 485 74 HOH HOH . F 4 HOH A 73 486 75 HOH HOH . F 4 HOH A 74 487 76 HOH HOH . F 4 HOH A 75 488 77 HOH HOH . F 4 HOH A 76 489 78 HOH HOH . F 4 HOH A 77 490 79 HOH HOH . F 4 HOH A 78 491 80 HOH HOH . F 4 HOH A 79 492 81 HOH HOH . F 4 HOH A 80 493 82 HOH HOH . F 4 HOH A 81 494 83 HOH HOH . F 4 HOH A 82 495 84 HOH HOH . F 4 HOH A 83 496 85 HOH HOH . F 4 HOH A 84 497 86 HOH HOH . F 4 HOH A 85 498 87 HOH HOH . F 4 HOH A 86 499 88 HOH HOH . F 4 HOH A 87 500 89 HOH HOH . F 4 HOH A 88 501 90 HOH HOH . F 4 HOH A 89 502 91 HOH HOH . F 4 HOH A 90 503 92 HOH HOH . F 4 HOH A 91 504 93 HOH HOH . F 4 HOH A 92 505 94 HOH HOH . F 4 HOH A 93 506 95 HOH HOH . F 4 HOH A 94 507 96 HOH HOH . F 4 HOH A 95 508 97 HOH HOH . F 4 HOH A 96 509 98 HOH HOH . F 4 HOH A 97 510 99 HOH HOH . F 4 HOH A 98 511 100 HOH HOH . F 4 HOH A 99 512 101 HOH HOH . F 4 HOH A 100 513 102 HOH HOH . F 4 HOH A 101 514 103 HOH HOH . F 4 HOH A 102 515 105 HOH HOH . F 4 HOH A 103 516 106 HOH HOH . F 4 HOH A 104 517 107 HOH HOH . F 4 HOH A 105 518 108 HOH HOH . F 4 HOH A 106 519 109 HOH HOH . F 4 HOH A 107 520 110 HOH HOH . F 4 HOH A 108 521 111 HOH HOH . F 4 HOH A 109 522 113 HOH HOH . F 4 HOH A 110 523 114 HOH HOH . F 4 HOH A 111 524 115 HOH HOH . F 4 HOH A 112 525 116 HOH HOH . F 4 HOH A 113 526 117 HOH HOH . F 4 HOH A 114 527 118 HOH HOH . F 4 HOH A 115 528 119 HOH HOH . F 4 HOH A 116 529 120 HOH HOH . F 4 HOH A 117 530 121 HOH HOH . F 4 HOH A 118 531 122 HOH HOH . F 4 HOH A 119 532 123 HOH HOH . F 4 HOH A 120 533 124 HOH HOH . F 4 HOH A 121 534 125 HOH HOH . F 4 HOH A 122 535 126 HOH HOH . F 4 HOH A 123 536 127 HOH HOH . F 4 HOH A 124 537 128 HOH HOH . F 4 HOH A 125 538 129 HOH HOH . F 4 HOH A 126 539 130 HOH HOH . F 4 HOH A 127 540 131 HOH HOH . F 4 HOH A 128 541 132 HOH HOH . F 4 HOH A 129 542 133 HOH HOH . F 4 HOH A 130 543 134 HOH HOH . F 4 HOH A 131 544 135 HOH HOH . F 4 HOH A 132 545 136 HOH HOH . F 4 HOH A 133 546 137 HOH HOH . F 4 HOH A 134 547 138 HOH HOH . F 4 HOH A 135 548 139 HOH HOH . F 4 HOH A 136 549 140 HOH HOH . F 4 HOH A 137 550 141 HOH HOH . F 4 HOH A 138 551 142 HOH HOH . F 4 HOH A 139 552 143 HOH HOH . F 4 HOH A 140 553 144 HOH HOH . F 4 HOH A 141 554 145 HOH HOH . F 4 HOH A 142 555 146 HOH HOH . F 4 HOH A 143 556 147 HOH HOH . F 4 HOH A 144 557 148 HOH HOH . F 4 HOH A 145 558 149 HOH HOH . F 4 HOH A 146 559 151 HOH HOH . F 4 HOH A 147 560 152 HOH HOH . F 4 HOH A 148 561 153 HOH HOH . F 4 HOH A 149 562 154 HOH HOH . F 4 HOH A 150 563 155 HOH HOH . F 4 HOH A 151 564 156 HOH HOH . F 4 HOH A 152 565 157 HOH HOH . F 4 HOH A 153 566 158 HOH HOH . F 4 HOH A 154 567 159 HOH HOH . F 4 HOH A 155 568 41 HOH HOH . F 4 HOH A 156 569 44 HOH HOH . F 4 HOH A 157 570 125 HOH HOH . G 4 HOH B 1 415 55 HOH HOH . G 4 HOH B 2 416 65 HOH HOH . G 4 HOH B 3 417 104 HOH HOH . G 4 HOH B 4 418 112 HOH HOH . G 4 HOH B 5 419 150 HOH HOH . G 4 HOH B 6 420 1 HOH HOH . G 4 HOH B 7 421 2 HOH HOH . G 4 HOH B 8 422 3 HOH HOH . G 4 HOH B 9 423 4 HOH HOH . G 4 HOH B 10 424 5 HOH HOH . G 4 HOH B 11 425 6 HOH HOH . G 4 HOH B 12 426 7 HOH HOH . G 4 HOH B 13 427 8 HOH HOH . G 4 HOH B 14 428 9 HOH HOH . G 4 HOH B 15 429 10 HOH HOH . G 4 HOH B 16 430 11 HOH HOH . G 4 HOH B 17 431 12 HOH HOH . G 4 HOH B 18 432 13 HOH HOH . G 4 HOH B 19 433 14 HOH HOH . G 4 HOH B 20 434 15 HOH HOH . G 4 HOH B 21 435 16 HOH HOH . G 4 HOH B 22 436 17 HOH HOH . G 4 HOH B 23 437 18 HOH HOH . G 4 HOH B 24 438 19 HOH HOH . G 4 HOH B 25 439 20 HOH HOH . G 4 HOH B 26 440 21 HOH HOH . G 4 HOH B 27 441 22 HOH HOH . G 4 HOH B 28 442 23 HOH HOH . G 4 HOH B 29 443 24 HOH HOH . G 4 HOH B 30 444 25 HOH HOH . G 4 HOH B 31 445 26 HOH HOH . G 4 HOH B 32 446 27 HOH HOH . G 4 HOH B 33 447 28 HOH HOH . G 4 HOH B 34 448 29 HOH HOH . G 4 HOH B 35 449 30 HOH HOH . G 4 HOH B 36 450 31 HOH HOH . G 4 HOH B 37 451 32 HOH HOH . G 4 HOH B 38 452 33 HOH HOH . G 4 HOH B 39 453 34 HOH HOH . G 4 HOH B 40 454 35 HOH HOH . G 4 HOH B 41 455 36 HOH HOH . G 4 HOH B 42 456 37 HOH HOH . G 4 HOH B 43 457 38 HOH HOH . G 4 HOH B 44 458 39 HOH HOH . G 4 HOH B 45 459 40 HOH HOH . G 4 HOH B 46 460 42 HOH HOH . G 4 HOH B 47 461 43 HOH HOH . G 4 HOH B 48 462 45 HOH HOH . G 4 HOH B 49 463 46 HOH HOH . G 4 HOH B 50 464 47 HOH HOH . G 4 HOH B 51 465 48 HOH HOH . G 4 HOH B 52 466 49 HOH HOH . G 4 HOH B 53 467 50 HOH HOH . G 4 HOH B 54 468 51 HOH HOH . G 4 HOH B 55 469 52 HOH HOH . G 4 HOH B 56 470 53 HOH HOH . G 4 HOH B 57 471 54 HOH HOH . G 4 HOH B 58 472 55 HOH HOH . G 4 HOH B 59 473 56 HOH HOH . G 4 HOH B 60 474 57 HOH HOH . G 4 HOH B 61 475 58 HOH HOH . G 4 HOH B 62 476 59 HOH HOH . G 4 HOH B 63 477 60 HOH HOH . G 4 HOH B 64 478 61 HOH HOH . G 4 HOH B 65 479 62 HOH HOH . G 4 HOH B 66 480 63 HOH HOH . G 4 HOH B 67 481 64 HOH HOH . G 4 HOH B 68 482 65 HOH HOH . G 4 HOH B 69 483 66 HOH HOH . G 4 HOH B 70 484 67 HOH HOH . G 4 HOH B 71 485 68 HOH HOH . G 4 HOH B 72 486 69 HOH HOH . G 4 HOH B 73 487 70 HOH HOH . G 4 HOH B 74 488 71 HOH HOH . G 4 HOH B 75 489 72 HOH HOH . G 4 HOH B 76 490 73 HOH HOH . G 4 HOH B 77 491 74 HOH HOH . G 4 HOH B 78 492 75 HOH HOH . G 4 HOH B 79 493 76 HOH HOH . G 4 HOH B 80 494 77 HOH HOH . G 4 HOH B 81 495 78 HOH HOH . G 4 HOH B 82 496 79 HOH HOH . G 4 HOH B 83 497 80 HOH HOH . G 4 HOH B 84 498 81 HOH HOH . G 4 HOH B 85 499 82 HOH HOH . G 4 HOH B 86 500 83 HOH HOH . G 4 HOH B 87 501 84 HOH HOH . G 4 HOH B 88 502 85 HOH HOH . G 4 HOH B 89 503 86 HOH HOH . G 4 HOH B 90 504 87 HOH HOH . G 4 HOH B 91 505 88 HOH HOH . G 4 HOH B 92 506 89 HOH HOH . G 4 HOH B 93 507 90 HOH HOH . G 4 HOH B 94 508 91 HOH HOH . G 4 HOH B 95 509 92 HOH HOH . G 4 HOH B 96 510 93 HOH HOH . G 4 HOH B 97 511 94 HOH HOH . G 4 HOH B 98 512 95 HOH HOH . G 4 HOH B 99 513 96 HOH HOH . G 4 HOH B 100 514 97 HOH HOH . G 4 HOH B 101 515 98 HOH HOH . G 4 HOH B 102 516 99 HOH HOH . G 4 HOH B 103 517 100 HOH HOH . G 4 HOH B 104 518 101 HOH HOH . G 4 HOH B 105 519 102 HOH HOH . G 4 HOH B 106 520 103 HOH HOH . G 4 HOH B 107 521 104 HOH HOH . G 4 HOH B 108 522 105 HOH HOH . G 4 HOH B 109 523 106 HOH HOH . G 4 HOH B 110 524 107 HOH HOH . G 4 HOH B 111 525 108 HOH HOH . G 4 HOH B 112 526 109 HOH HOH . G 4 HOH B 113 527 110 HOH HOH . G 4 HOH B 114 528 111 HOH HOH . G 4 HOH B 115 529 112 HOH HOH . G 4 HOH B 116 530 113 HOH HOH . G 4 HOH B 117 531 114 HOH HOH . G 4 HOH B 118 532 115 HOH HOH . G 4 HOH B 119 533 116 HOH HOH . G 4 HOH B 120 534 117 HOH HOH . G 4 HOH B 121 535 118 HOH HOH . G 4 HOH B 122 536 119 HOH HOH . G 4 HOH B 123 537 120 HOH HOH . G 4 HOH B 124 538 121 HOH HOH . G 4 HOH B 125 539 122 HOH HOH . G 4 HOH B 126 540 123 HOH HOH . G 4 HOH B 127 541 124 HOH HOH . G 4 HOH B 128 542 126 HOH HOH . G 4 HOH B 129 543 127 HOH HOH . G 4 HOH B 130 544 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA PPT . . . E 3 103.42 46.191 11.94 1 20.16 ? CA PPT 414 B 1 HETATM 2 C C PPT . . . E 3 102.988 47.107 13.069 1 20.39 ? C PPT 414 B 1 HETATM 3 O OT1 PPT . . . E 3 103.366 46.843 14.227 1 20.15 ? OT1 PPT 414 B 1 HETATM 4 O OT2 PPT . . . E 3 102.259 48.089 12.81 1 21.12 ? OT2 PPT 414 B 1 HETATM 5 C CB PPT . . . E 3 102.309 45.917 10.925 1 20.74 ? CB PPT 414 B 1 HETATM 6 C CG PPT . . . E 3 101.23 44.978 11.423 1 20.42 ? CG PPT 414 B 1 HETATM 7 C CD1 PPT . . . E 3 101.055 43.726 10.839 1 20.39 ? CD1 PPT 414 B 1 HETATM 8 C CD2 PPT . . . E 3 100.373 45.358 12.449 1 20.33 ? CD2 PPT 414 B 1 HETATM 9 C CE1 PPT . . . E 3 100.043 42.879 11.27 1 20.13 ? CE1 PPT 414 B 1 HETATM 10 C CE2 PPT . . . E 3 99.364 44.515 12.879 1 20.69 ? CE2 PPT 414 B 1 HETATM 11 C CZ PPT . . . E 3 99.184 43.268 12.294 1 21.11 ? CZ PPT 414 B 1 HETATM 12 C CH PPT . . . E 3 98.057 42.374 12.733 1 20.97 ? CH PPT 414 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #