data_2AY7 # _model_server_result.job_id o3DhIJiP1n3tMf26DLBTPQ _model_server_result.datetime_utc '2024-11-04 04:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ay7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":413}' # _entry.id 2AY7 # _exptl.entry_id 2AY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AY7 _cell.length_a 124.08 _cell.length_b 121.79 _cell.length_c 55.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 243 A LYS 258 1_555 C C4A PLP . A PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.28 ? covale ? covale2 B NZ LYS 243 B LYS 258 1_555 D C4A PLP . B PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 2AY7 _atom_sites.fract_transf_matrix[1][1] 0.008059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 413 413 PLP PLP . D 2 PLP B 1 413 413 PLP PLP . E 3 CLT B 1 414 414 CLT CLT . F 4 HOH A 1 414 1 HOH HOH . F 4 HOH A 2 415 2 HOH HOH . F 4 HOH A 3 416 3 HOH HOH . F 4 HOH A 4 417 4 HOH HOH . F 4 HOH A 5 418 5 HOH HOH . F 4 HOH A 6 419 6 HOH HOH . F 4 HOH A 7 420 7 HOH HOH . F 4 HOH A 8 421 8 HOH HOH . F 4 HOH A 9 422 9 HOH HOH . F 4 HOH A 10 423 10 HOH HOH . F 4 HOH A 11 424 11 HOH HOH . F 4 HOH A 12 425 12 HOH HOH . F 4 HOH A 13 426 13 HOH HOH . F 4 HOH A 14 427 14 HOH HOH . F 4 HOH A 15 428 15 HOH HOH . F 4 HOH A 16 429 16 HOH HOH . F 4 HOH A 17 430 17 HOH HOH . F 4 HOH A 18 431 18 HOH HOH . F 4 HOH A 19 432 19 HOH HOH . F 4 HOH A 20 433 20 HOH HOH . F 4 HOH A 21 434 22 HOH HOH . F 4 HOH A 22 435 23 HOH HOH . F 4 HOH A 23 436 24 HOH HOH . F 4 HOH A 24 437 25 HOH HOH . F 4 HOH A 25 438 26 HOH HOH . F 4 HOH A 26 439 27 HOH HOH . F 4 HOH A 27 440 28 HOH HOH . F 4 HOH A 28 441 29 HOH HOH . F 4 HOH A 29 442 30 HOH HOH . F 4 HOH A 30 443 31 HOH HOH . F 4 HOH A 31 444 32 HOH HOH . F 4 HOH A 32 445 33 HOH HOH . F 4 HOH A 33 446 34 HOH HOH . F 4 HOH A 34 447 35 HOH HOH . F 4 HOH A 35 448 36 HOH HOH . F 4 HOH A 36 449 37 HOH HOH . F 4 HOH A 37 450 39 HOH HOH . F 4 HOH A 38 451 40 HOH HOH . F 4 HOH A 39 452 41 HOH HOH . F 4 HOH A 40 453 42 HOH HOH . F 4 HOH A 41 454 43 HOH HOH . F 4 HOH A 42 455 44 HOH HOH . F 4 HOH A 43 456 45 HOH HOH . F 4 HOH A 44 457 46 HOH HOH . F 4 HOH A 45 458 47 HOH HOH . F 4 HOH A 46 459 48 HOH HOH . F 4 HOH A 47 460 49 HOH HOH . F 4 HOH A 48 461 51 HOH HOH . F 4 HOH A 49 462 52 HOH HOH . F 4 HOH A 50 463 53 HOH HOH . F 4 HOH A 51 464 54 HOH HOH . F 4 HOH A 52 465 55 HOH HOH . F 4 HOH A 53 466 56 HOH HOH . F 4 HOH A 54 467 57 HOH HOH . F 4 HOH A 55 468 59 HOH HOH . F 4 HOH A 56 469 60 HOH HOH . F 4 HOH A 57 470 61 HOH HOH . F 4 HOH A 58 471 62 HOH HOH . F 4 HOH A 59 472 63 HOH HOH . F 4 HOH A 60 473 65 HOH HOH . F 4 HOH A 61 474 66 HOH HOH . F 4 HOH A 62 475 67 HOH HOH . F 4 HOH A 63 476 68 HOH HOH . F 4 HOH A 64 477 69 HOH HOH . F 4 HOH A 65 478 70 HOH HOH . F 4 HOH A 66 479 71 HOH HOH . F 4 HOH A 67 480 72 HOH HOH . F 4 HOH A 68 481 73 HOH HOH . F 4 HOH A 69 482 74 HOH HOH . F 4 HOH A 70 483 76 HOH HOH . F 4 HOH A 71 484 77 HOH HOH . F 4 HOH A 72 485 78 HOH HOH . F 4 HOH A 73 486 79 HOH HOH . F 4 HOH A 74 487 80 HOH HOH . F 4 HOH A 75 488 81 HOH HOH . F 4 HOH A 76 489 82 HOH HOH . F 4 HOH A 77 490 83 HOH HOH . F 4 HOH A 78 491 84 HOH HOH . F 4 HOH A 79 492 85 HOH HOH . F 4 HOH A 80 493 86 HOH HOH . F 4 HOH A 81 494 87 HOH HOH . F 4 HOH A 82 495 88 HOH HOH . F 4 HOH A 83 496 89 HOH HOH . F 4 HOH A 84 497 90 HOH HOH . F 4 HOH A 85 498 91 HOH HOH . F 4 HOH A 86 499 92 HOH HOH . F 4 HOH A 87 500 93 HOH HOH . F 4 HOH A 88 501 94 HOH HOH . F 4 HOH A 89 502 95 HOH HOH . F 4 HOH A 90 503 96 HOH HOH . F 4 HOH A 91 504 97 HOH HOH . F 4 HOH A 92 505 98 HOH HOH . F 4 HOH A 93 506 99 HOH HOH . F 4 HOH A 94 507 100 HOH HOH . F 4 HOH A 95 508 101 HOH HOH . F 4 HOH A 96 509 102 HOH HOH . F 4 HOH A 97 510 103 HOH HOH . F 4 HOH A 98 511 104 HOH HOH . F 4 HOH A 99 512 105 HOH HOH . F 4 HOH A 100 513 106 HOH HOH . F 4 HOH A 101 514 107 HOH HOH . F 4 HOH A 102 515 108 HOH HOH . F 4 HOH A 103 516 109 HOH HOH . F 4 HOH A 104 517 110 HOH HOH . F 4 HOH A 105 518 111 HOH HOH . F 4 HOH A 106 519 112 HOH HOH . F 4 HOH A 107 520 113 HOH HOH . F 4 HOH A 108 521 114 HOH HOH . F 4 HOH A 109 522 115 HOH HOH . F 4 HOH A 110 523 116 HOH HOH . F 4 HOH A 111 524 117 HOH HOH . F 4 HOH A 112 525 118 HOH HOH . F 4 HOH A 113 526 119 HOH HOH . F 4 HOH A 114 527 120 HOH HOH . F 4 HOH A 115 528 121 HOH HOH . F 4 HOH A 116 529 122 HOH HOH . F 4 HOH A 117 530 123 HOH HOH . F 4 HOH A 118 531 124 HOH HOH . F 4 HOH A 119 532 125 HOH HOH . F 4 HOH A 120 533 126 HOH HOH . F 4 HOH A 121 534 127 HOH HOH . F 4 HOH A 122 535 128 HOH HOH . F 4 HOH A 123 536 129 HOH HOH . F 4 HOH A 124 537 46 HOH HOH . F 4 HOH A 125 538 54 HOH HOH . F 4 HOH A 126 539 89 HOH HOH . F 4 HOH A 127 540 101 HOH HOH . G 4 HOH B 1 415 21 HOH HOH . G 4 HOH B 2 416 38 HOH HOH . G 4 HOH B 3 417 50 HOH HOH . G 4 HOH B 4 418 58 HOH HOH . G 4 HOH B 5 419 64 HOH HOH . G 4 HOH B 6 420 75 HOH HOH . G 4 HOH B 7 421 1 HOH HOH . G 4 HOH B 8 422 2 HOH HOH . G 4 HOH B 9 423 3 HOH HOH . G 4 HOH B 10 424 4 HOH HOH . G 4 HOH B 11 425 5 HOH HOH . G 4 HOH B 12 426 6 HOH HOH . G 4 HOH B 13 427 7 HOH HOH . G 4 HOH B 14 428 8 HOH HOH . G 4 HOH B 15 429 9 HOH HOH . G 4 HOH B 16 430 10 HOH HOH . G 4 HOH B 17 431 11 HOH HOH . G 4 HOH B 18 432 12 HOH HOH . G 4 HOH B 19 433 13 HOH HOH . G 4 HOH B 20 434 14 HOH HOH . G 4 HOH B 21 435 15 HOH HOH . G 4 HOH B 22 436 16 HOH HOH . G 4 HOH B 23 437 17 HOH HOH . G 4 HOH B 24 438 18 HOH HOH . G 4 HOH B 25 439 19 HOH HOH . G 4 HOH B 26 440 20 HOH HOH . G 4 HOH B 27 441 21 HOH HOH . G 4 HOH B 28 442 22 HOH HOH . G 4 HOH B 29 443 23 HOH HOH . G 4 HOH B 30 444 24 HOH HOH . G 4 HOH B 31 445 25 HOH HOH . G 4 HOH B 32 446 26 HOH HOH . G 4 HOH B 33 447 27 HOH HOH . G 4 HOH B 34 448 28 HOH HOH . G 4 HOH B 35 449 29 HOH HOH . G 4 HOH B 36 450 30 HOH HOH . G 4 HOH B 37 451 31 HOH HOH . G 4 HOH B 38 452 32 HOH HOH . G 4 HOH B 39 453 33 HOH HOH . G 4 HOH B 40 454 34 HOH HOH . G 4 HOH B 41 455 35 HOH HOH . G 4 HOH B 42 456 36 HOH HOH . G 4 HOH B 43 457 37 HOH HOH . G 4 HOH B 44 458 38 HOH HOH . G 4 HOH B 45 459 39 HOH HOH . G 4 HOH B 46 460 40 HOH HOH . G 4 HOH B 47 461 41 HOH HOH . G 4 HOH B 48 462 42 HOH HOH . G 4 HOH B 49 463 43 HOH HOH . G 4 HOH B 50 464 44 HOH HOH . G 4 HOH B 51 465 45 HOH HOH . G 4 HOH B 52 466 47 HOH HOH . G 4 HOH B 53 467 48 HOH HOH . G 4 HOH B 54 468 49 HOH HOH . G 4 HOH B 55 469 50 HOH HOH . G 4 HOH B 56 470 51 HOH HOH . G 4 HOH B 57 471 52 HOH HOH . G 4 HOH B 58 472 53 HOH HOH . G 4 HOH B 59 473 55 HOH HOH . G 4 HOH B 60 474 56 HOH HOH . G 4 HOH B 61 475 57 HOH HOH . G 4 HOH B 62 476 58 HOH HOH . G 4 HOH B 63 477 59 HOH HOH . G 4 HOH B 64 478 60 HOH HOH . G 4 HOH B 65 479 61 HOH HOH . G 4 HOH B 66 480 62 HOH HOH . G 4 HOH B 67 481 63 HOH HOH . G 4 HOH B 68 482 64 HOH HOH . G 4 HOH B 69 483 65 HOH HOH . G 4 HOH B 70 484 66 HOH HOH . G 4 HOH B 71 485 67 HOH HOH . G 4 HOH B 72 486 68 HOH HOH . G 4 HOH B 73 487 69 HOH HOH . G 4 HOH B 74 488 70 HOH HOH . G 4 HOH B 75 489 71 HOH HOH . G 4 HOH B 76 490 72 HOH HOH . G 4 HOH B 77 491 73 HOH HOH . G 4 HOH B 78 492 74 HOH HOH . G 4 HOH B 79 493 75 HOH HOH . G 4 HOH B 80 494 76 HOH HOH . G 4 HOH B 81 495 77 HOH HOH . G 4 HOH B 82 496 78 HOH HOH . G 4 HOH B 83 497 79 HOH HOH . G 4 HOH B 84 498 80 HOH HOH . G 4 HOH B 85 499 81 HOH HOH . G 4 HOH B 86 500 82 HOH HOH . G 4 HOH B 87 501 83 HOH HOH . G 4 HOH B 88 502 84 HOH HOH . G 4 HOH B 89 503 85 HOH HOH . G 4 HOH B 90 504 86 HOH HOH . G 4 HOH B 91 505 87 HOH HOH . G 4 HOH B 92 506 88 HOH HOH . G 4 HOH B 93 507 90 HOH HOH . G 4 HOH B 94 508 91 HOH HOH . G 4 HOH B 95 509 92 HOH HOH . G 4 HOH B 96 510 93 HOH HOH . G 4 HOH B 97 511 94 HOH HOH . G 4 HOH B 98 512 95 HOH HOH . G 4 HOH B 99 513 96 HOH HOH . G 4 HOH B 100 514 97 HOH HOH . G 4 HOH B 101 515 98 HOH HOH . G 4 HOH B 102 516 99 HOH HOH . G 4 HOH B 103 517 100 HOH HOH . G 4 HOH B 104 518 102 HOH HOH . G 4 HOH B 105 519 103 HOH HOH . G 4 HOH B 106 520 104 HOH HOH . G 4 HOH B 107 521 105 HOH HOH . G 4 HOH B 108 522 106 HOH HOH . G 4 HOH B 109 523 107 HOH HOH . G 4 HOH B 110 524 108 HOH HOH . G 4 HOH B 111 525 109 HOH HOH . G 4 HOH B 112 526 110 HOH HOH . G 4 HOH B 113 527 111 HOH HOH . G 4 HOH B 114 528 112 HOH HOH . G 4 HOH B 115 529 113 HOH HOH . G 4 HOH B 116 530 114 HOH HOH . G 4 HOH B 117 531 115 HOH HOH . G 4 HOH B 118 532 116 HOH HOH . G 4 HOH B 119 533 117 HOH HOH . G 4 HOH B 120 534 118 HOH HOH . G 4 HOH B 121 535 119 HOH HOH . G 4 HOH B 122 536 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 2 106.567 40.978 13.695 1 7.78 ? N1 PLP 413 B 1 HETATM 2 C C2 PLP . . . D 2 106.79 42.314 13.689 1 7.81 ? C2 PLP 413 B 1 HETATM 3 C C2A PLP . . . D 2 107.46 42.958 14.867 1 8.46 ? C2A PLP 413 B 1 HETATM 4 C C3 PLP . . . D 2 106.445 43.061 12.612 1 9.36 ? C3 PLP 413 B 1 HETATM 5 O O3 PLP . . . D 2 106.702 44.397 12.64 1 10.18 ? O3 PLP 413 B 1 HETATM 6 C C4 PLP . . . D 2 105.838 42.438 11.495 1 10.38 ? C4 PLP 413 B 1 HETATM 7 C C4A PLP . . . D 2 105.491 43.174 10.348 1 8.73 ? C4A PLP 413 B 1 HETATM 8 C C5 PLP . . . D 2 105.625 41.026 11.55 1 10.04 ? C5 PLP 413 B 1 HETATM 9 C C6 PLP . . . D 2 105.999 40.339 12.646 1 8.51 ? C6 PLP 413 B 1 HETATM 10 C C5A PLP . . . D 2 104.998 40.229 10.406 1 11.34 ? C5A PLP 413 B 1 HETATM 11 O O4P PLP . . . D 2 104.122 40.879 9.494 1 11.86 ? O4P PLP 413 B 1 HETATM 12 P P PLP . . . D 2 103.386 40.066 8.411 1 12.18 ? P PLP 413 B 1 HETATM 13 O O1P PLP . . . D 2 104.372 39.7 7.373 1 13.14 ? O1P PLP 413 B 1 HETATM 14 O O2P PLP . . . D 2 102.409 41.153 7.809 1 14.56 ? O2P PLP 413 B 1 HETATM 15 O O3P PLP . . . D 2 102.591 39.007 9.053 1 10.92 ? O3P PLP 413 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #