data_2AY9
#
_model_server_result.job_id            OcQcVKp5sBfyKaz7becysQ 
_model_server_result.datetime_utc      '2024-12-21 13:18:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ay9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":413}' 
#
_entry.id    2AY9 
#
_exptl.entry_id    2AY9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2AY9 
_cell.length_a            123.78 
_cell.length_b            120.94 
_cell.length_c            54.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 243 A LYS 258 1_555 C C4A PLP . A PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 B NZ LYS 243 B LYS 258 1_555 E C4A PLP . B PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     2AY9 
_atom_sites.fract_transf_matrix[1][1]    0.008079 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008269 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018215 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 413 413 PLP PLP . 
D 3 5PV A 1 414 414 5PV 5PV . 
E 2 PLP B 1 413 413 PLP PLP . 
F 3 5PV B 1 414 414 5PV 5PV . 
G 4 HOH A 1 415 1 HOH HOH . 
G 4 HOH A 2 416 2 HOH HOH . 
G 4 HOH A 3 417 3 HOH HOH . 
G 4 HOH A 4 418 4 HOH HOH . 
G 4 HOH A 5 419 5 HOH HOH . 
G 4 HOH A 6 420 6 HOH HOH . 
G 4 HOH A 7 421 7 HOH HOH . 
G 4 HOH A 8 422 8 HOH HOH . 
G 4 HOH A 9 423 9 HOH HOH . 
G 4 HOH A 10 424 10 HOH HOH . 
G 4 HOH A 11 425 11 HOH HOH . 
G 4 HOH A 12 426 12 HOH HOH . 
G 4 HOH A 13 427 13 HOH HOH . 
G 4 HOH A 14 428 14 HOH HOH . 
G 4 HOH A 15 429 15 HOH HOH . 
G 4 HOH A 16 430 16 HOH HOH . 
G 4 HOH A 17 431 17 HOH HOH . 
G 4 HOH A 18 432 18 HOH HOH . 
G 4 HOH A 19 433 19 HOH HOH . 
G 4 HOH A 20 434 20 HOH HOH . 
G 4 HOH A 21 435 21 HOH HOH . 
G 4 HOH A 22 436 22 HOH HOH . 
G 4 HOH A 23 437 23 HOH HOH . 
G 4 HOH A 24 438 24 HOH HOH . 
G 4 HOH A 25 439 25 HOH HOH . 
G 4 HOH A 26 440 26 HOH HOH . 
G 4 HOH A 27 441 27 HOH HOH . 
G 4 HOH A 28 442 28 HOH HOH . 
G 4 HOH A 29 443 29 HOH HOH . 
G 4 HOH A 30 444 30 HOH HOH . 
G 4 HOH A 31 445 31 HOH HOH . 
G 4 HOH A 32 446 32 HOH HOH . 
G 4 HOH A 33 447 33 HOH HOH . 
G 4 HOH A 34 448 34 HOH HOH . 
G 4 HOH A 35 449 35 HOH HOH . 
G 4 HOH A 36 450 36 HOH HOH . 
G 4 HOH A 37 451 37 HOH HOH . 
G 4 HOH A 38 452 38 HOH HOH . 
G 4 HOH A 39 453 39 HOH HOH . 
G 4 HOH A 40 454 40 HOH HOH . 
G 4 HOH A 41 455 41 HOH HOH . 
G 4 HOH A 42 456 42 HOH HOH . 
G 4 HOH A 43 457 43 HOH HOH . 
G 4 HOH A 44 458 44 HOH HOH . 
G 4 HOH A 45 459 45 HOH HOH . 
G 4 HOH A 46 460 46 HOH HOH . 
G 4 HOH A 47 461 47 HOH HOH . 
G 4 HOH A 48 462 48 HOH HOH . 
G 4 HOH A 49 463 49 HOH HOH . 
G 4 HOH A 50 464 50 HOH HOH . 
G 4 HOH A 51 465 51 HOH HOH . 
G 4 HOH A 52 466 52 HOH HOH . 
G 4 HOH A 53 467 53 HOH HOH . 
G 4 HOH A 54 468 54 HOH HOH . 
G 4 HOH A 55 469 55 HOH HOH . 
G 4 HOH A 56 470 56 HOH HOH . 
G 4 HOH A 57 471 57 HOH HOH . 
G 4 HOH A 58 472 58 HOH HOH . 
G 4 HOH A 59 473 59 HOH HOH . 
G 4 HOH A 60 474 60 HOH HOH . 
G 4 HOH A 61 475 61 HOH HOH . 
G 4 HOH A 62 476 62 HOH HOH . 
G 4 HOH A 63 477 63 HOH HOH . 
G 4 HOH A 64 478 64 HOH HOH . 
G 4 HOH A 65 479 65 HOH HOH . 
G 4 HOH A 66 480 66 HOH HOH . 
G 4 HOH A 67 481 67 HOH HOH . 
G 4 HOH A 68 482 68 HOH HOH . 
G 4 HOH A 69 483 69 HOH HOH . 
G 4 HOH A 70 484 70 HOH HOH . 
G 4 HOH A 71 485 71 HOH HOH . 
G 4 HOH A 72 486 72 HOH HOH . 
G 4 HOH A 73 487 73 HOH HOH . 
G 4 HOH A 74 488 74 HOH HOH . 
G 4 HOH A 75 489 76 HOH HOH . 
G 4 HOH A 76 490 77 HOH HOH . 
G 4 HOH A 77 491 78 HOH HOH . 
G 4 HOH A 78 492 79 HOH HOH . 
G 4 HOH A 79 493 80 HOH HOH . 
G 4 HOH A 80 494 81 HOH HOH . 
G 4 HOH A 81 495 82 HOH HOH . 
G 4 HOH A 82 496 83 HOH HOH . 
G 4 HOH A 83 497 84 HOH HOH . 
G 4 HOH A 84 498 85 HOH HOH . 
G 4 HOH A 85 499 86 HOH HOH . 
G 4 HOH A 86 500 87 HOH HOH . 
G 4 HOH A 87 501 88 HOH HOH . 
G 4 HOH A 88 502 89 HOH HOH . 
G 4 HOH A 89 503 90 HOH HOH . 
G 4 HOH A 90 504 91 HOH HOH . 
G 4 HOH A 91 505 92 HOH HOH . 
G 4 HOH A 92 506 93 HOH HOH . 
G 4 HOH A 93 507 94 HOH HOH . 
G 4 HOH A 94 508 95 HOH HOH . 
G 4 HOH A 95 509 97 HOH HOH . 
G 4 HOH A 96 510 70 HOH HOH . 
G 4 HOH A 97 511 85 HOH HOH . 
G 4 HOH A 98 512 89 HOH HOH . 
G 4 HOH A 99 513 91 HOH HOH . 
H 4 HOH B 1 415 75 HOH HOH . 
H 4 HOH B 2 416 96 HOH HOH . 
H 4 HOH B 3 417 1 HOH HOH . 
H 4 HOH B 4 418 2 HOH HOH . 
H 4 HOH B 5 419 3 HOH HOH . 
H 4 HOH B 6 420 4 HOH HOH . 
H 4 HOH B 7 421 5 HOH HOH . 
H 4 HOH B 8 422 6 HOH HOH . 
H 4 HOH B 9 423 7 HOH HOH . 
H 4 HOH B 10 424 8 HOH HOH . 
H 4 HOH B 11 425 9 HOH HOH . 
H 4 HOH B 12 426 10 HOH HOH . 
H 4 HOH B 13 427 11 HOH HOH . 
H 4 HOH B 14 428 12 HOH HOH . 
H 4 HOH B 15 429 13 HOH HOH . 
H 4 HOH B 16 430 14 HOH HOH . 
H 4 HOH B 17 431 15 HOH HOH . 
H 4 HOH B 18 432 16 HOH HOH . 
H 4 HOH B 19 433 17 HOH HOH . 
H 4 HOH B 20 434 18 HOH HOH . 
H 4 HOH B 21 435 19 HOH HOH . 
H 4 HOH B 22 436 20 HOH HOH . 
H 4 HOH B 23 437 21 HOH HOH . 
H 4 HOH B 24 438 22 HOH HOH . 
H 4 HOH B 25 439 23 HOH HOH . 
H 4 HOH B 26 440 24 HOH HOH . 
H 4 HOH B 27 441 25 HOH HOH . 
H 4 HOH B 28 442 26 HOH HOH . 
H 4 HOH B 29 443 27 HOH HOH . 
H 4 HOH B 30 444 28 HOH HOH . 
H 4 HOH B 31 445 29 HOH HOH . 
H 4 HOH B 32 446 30 HOH HOH . 
H 4 HOH B 33 447 31 HOH HOH . 
H 4 HOH B 34 448 32 HOH HOH . 
H 4 HOH B 35 449 33 HOH HOH . 
H 4 HOH B 36 450 34 HOH HOH . 
H 4 HOH B 37 451 35 HOH HOH . 
H 4 HOH B 38 452 36 HOH HOH . 
H 4 HOH B 39 453 37 HOH HOH . 
H 4 HOH B 40 454 38 HOH HOH . 
H 4 HOH B 41 455 39 HOH HOH . 
H 4 HOH B 42 456 40 HOH HOH . 
H 4 HOH B 43 457 41 HOH HOH . 
H 4 HOH B 44 458 42 HOH HOH . 
H 4 HOH B 45 459 43 HOH HOH . 
H 4 HOH B 46 460 44 HOH HOH . 
H 4 HOH B 47 461 45 HOH HOH . 
H 4 HOH B 48 462 46 HOH HOH . 
H 4 HOH B 49 463 47 HOH HOH . 
H 4 HOH B 50 464 48 HOH HOH . 
H 4 HOH B 51 465 49 HOH HOH . 
H 4 HOH B 52 466 50 HOH HOH . 
H 4 HOH B 53 467 51 HOH HOH . 
H 4 HOH B 54 468 52 HOH HOH . 
H 4 HOH B 55 469 53 HOH HOH . 
H 4 HOH B 56 470 54 HOH HOH . 
H 4 HOH B 57 471 55 HOH HOH . 
H 4 HOH B 58 472 56 HOH HOH . 
H 4 HOH B 59 473 57 HOH HOH . 
H 4 HOH B 60 474 58 HOH HOH . 
H 4 HOH B 61 475 59 HOH HOH . 
H 4 HOH B 62 476 60 HOH HOH . 
H 4 HOH B 63 477 61 HOH HOH . 
H 4 HOH B 64 478 62 HOH HOH . 
H 4 HOH B 65 479 63 HOH HOH . 
H 4 HOH B 66 480 64 HOH HOH . 
H 4 HOH B 67 481 65 HOH HOH . 
H 4 HOH B 68 482 66 HOH HOH . 
H 4 HOH B 69 483 67 HOH HOH . 
H 4 HOH B 70 484 68 HOH HOH . 
H 4 HOH B 71 485 69 HOH HOH . 
H 4 HOH B 72 486 71 HOH HOH . 
H 4 HOH B 73 487 72 HOH HOH . 
H 4 HOH B 74 488 73 HOH HOH . 
H 4 HOH B 75 489 74 HOH HOH . 
H 4 HOH B 76 490 75 HOH HOH . 
H 4 HOH B 77 491 76 HOH HOH . 
H 4 HOH B 78 492 77 HOH HOH . 
H 4 HOH B 79 493 78 HOH HOH . 
H 4 HOH B 80 494 79 HOH HOH . 
H 4 HOH B 81 495 80 HOH HOH . 
H 4 HOH B 82 496 81 HOH HOH . 
H 4 HOH B 83 497 82 HOH HOH . 
H 4 HOH B 84 498 83 HOH HOH . 
H 4 HOH B 85 499 84 HOH HOH . 
H 4 HOH B 86 500 86 HOH HOH . 
H 4 HOH B 87 501 87 HOH HOH . 
H 4 HOH B 88 502 88 HOH HOH . 
H 4 HOH B 89 503 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 87.265 19.613 0.051 1 11.55 ? N1 PLP 413 A 1 
HETATM 2 C C2 PLP . . . C 2 87.328 18.75 -0.96 1 12.77 ? C2 PLP 413 A 1 
HETATM 3 C C2A PLP . . . C 2 86.446 17.49 -0.866 1 11.55 ? C2A PLP 413 A 1 
HETATM 4 C C3 PLP . . . C 2 88.187 18.974 -2.017 1 12.44 ? C3 PLP 413 A 1 
HETATM 5 O O3 PLP . . . C 2 88.21 18.04 -3.071 1 12.86 ? O3 PLP 413 A 1 
HETATM 6 C C4 PLP . . . C 2 88.985 20.142 -2.015 1 12.19 ? C4 PLP 413 A 1 
HETATM 7 C C4A PLP . . . C 2 89.805 20.448 -3.056 1 12.16 ? C4A PLP 413 A 1 
HETATM 8 C C5 PLP . . . C 2 88.876 21.021 -0.929 1 12.41 ? C5 PLP 413 A 1 
HETATM 9 C C6 PLP . . . C 2 88.006 20.721 0.08 1 12 ? C6 PLP 413 A 1 
HETATM 10 C C5A PLP . . . C 2 89.656 22.337 -0.813 1 12.18 ? C5A PLP 413 A 1 
HETATM 11 O O4P PLP . . . C 2 90.891 22.486 -1.422 1 12.65 ? O4P PLP 413 A 1 
HETATM 12 P P PLP . . . C 2 91.691 23.805 -1.215 1 11.73 ? P PLP 413 A 1 
HETATM 13 O O1P PLP . . . C 2 90.931 24.944 -1.726 1 11.23 ? O1P PLP 413 A 1 
HETATM 14 O O2P PLP . . . C 2 92.707 23.456 -2.358 1 11.5 ? O2P PLP 413 A 1 
HETATM 15 O O3P PLP . . . C 2 92.343 23.862 0.102 1 9.83 ? O3P PLP 413 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#