data_2AYD
#
_model_server_result.job_id            ipN6DjULVK2b2lNPqAZ0hA 
_model_server_result.datetime_utc      '2024-12-26 13:48:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ayd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    2AYD 
#
_exptl.entry_id    2AYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2AYD 
_cell.length_a            45.552 
_cell.length_b            45.552 
_cell.length_c            68.962 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 40 A CYS 332 1_555 B ZN ZN . A ZN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc2 A SG CYS 45 A CYS 337 1_555 B ZN ZN . A ZN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 A ND1 HIS 69 A HIS 361 1_555 B ZN ZN . A ZN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc4 A NE2 HIS 71 A HIS 363 1_555 B ZN ZN . A ZN 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 278 n n 
C1 O2 SIN sing 279 n n 
C1 C2 SIN sing 280 n n 
O2 HO2 SIN sing 281 n n 
C2 C3 SIN sing 282 n n 
C2 H21 SIN sing 283 n n 
C2 H22 SIN sing 284 n n 
C3 C4 SIN sing 285 n n 
C3 H31 SIN sing 286 n n 
C3 H32 SIN sing 287 n n 
C4 O3 SIN doub 288 n n 
C4 O4 SIN sing 289 n n 
O4 HO4 SIN sing 290 n n 
#
_atom_sites.entry_id                     2AYD 
_atom_sites.fract_transf_matrix[1][1]    0.02195 
_atom_sites.fract_transf_matrix[1][2]    0.01267 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0145 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 369 369 ZN ZN . 
C 3 SIN A 1 401 401 SIN SIN . 
D 4 HOH A 1 601 601 HOH HOH . 
D 4 HOH A 2 602 602 HOH HOH . 
D 4 HOH A 3 603 603 HOH HOH . 
D 4 HOH A 4 604 604 HOH HOH . 
D 4 HOH A 5 605 605 HOH HOH . 
D 4 HOH A 6 606 606 HOH HOH . 
D 4 HOH A 7 607 607 HOH HOH . 
D 4 HOH A 8 608 608 HOH HOH . 
D 4 HOH A 9 609 609 HOH HOH . 
D 4 HOH A 10 610 610 HOH HOH . 
D 4 HOH A 11 611 611 HOH HOH . 
D 4 HOH A 12 612 612 HOH HOH . 
D 4 HOH A 13 613 613 HOH HOH . 
D 4 HOH A 14 614 614 HOH HOH . 
D 4 HOH A 15 615 615 HOH HOH . 
D 4 HOH A 16 616 616 HOH HOH . 
D 4 HOH A 17 617 617 HOH HOH . 
D 4 HOH A 18 618 618 HOH HOH . 
D 4 HOH A 19 619 619 HOH HOH . 
D 4 HOH A 20 620 620 HOH HOH . 
D 4 HOH A 21 621 621 HOH HOH . 
D 4 HOH A 22 622 622 HOH HOH . 
D 4 HOH A 23 623 623 HOH HOH . 
D 4 HOH A 24 624 624 HOH HOH . 
D 4 HOH A 25 625 625 HOH HOH . 
D 4 HOH A 26 626 626 HOH HOH . 
D 4 HOH A 27 627 627 HOH HOH . 
D 4 HOH A 28 628 628 HOH HOH . 
D 4 HOH A 29 629 629 HOH HOH . 
D 4 HOH A 30 630 630 HOH HOH . 
D 4 HOH A 31 631 631 HOH HOH . 
D 4 HOH A 32 632 632 HOH HOH . 
D 4 HOH A 33 633 633 HOH HOH . 
D 4 HOH A 34 634 634 HOH HOH . 
D 4 HOH A 35 635 635 HOH HOH . 
D 4 HOH A 36 636 636 HOH HOH . 
D 4 HOH A 37 637 637 HOH HOH . 
D 4 HOH A 38 638 638 HOH HOH . 
D 4 HOH A 39 639 639 HOH HOH . 
D 4 HOH A 40 640 640 HOH HOH . 
D 4 HOH A 41 641 641 HOH HOH . 
D 4 HOH A 42 642 642 HOH HOH . 
D 4 HOH A 43 643 643 HOH HOH . 
D 4 HOH A 44 644 644 HOH HOH . 
D 4 HOH A 45 645 645 HOH HOH . 
D 4 HOH A 46 646 646 HOH HOH . 
D 4 HOH A 47 647 647 HOH HOH . 
D 4 HOH A 48 648 648 HOH HOH . 
D 4 HOH A 49 649 649 HOH HOH . 
D 4 HOH A 50 650 650 HOH HOH . 
D 4 HOH A 51 651 651 HOH HOH . 
D 4 HOH A 52 652 652 HOH HOH . 
D 4 HOH A 53 653 653 HOH HOH . 
D 4 HOH A 54 654 654 HOH HOH . 
D 4 HOH A 55 655 655 HOH HOH . 
D 4 HOH A 56 656 656 HOH HOH . 
D 4 HOH A 57 657 657 HOH HOH . 
D 4 HOH A 58 658 658 HOH HOH . 
D 4 HOH A 59 659 659 HOH HOH . 
D 4 HOH A 60 660 660 HOH HOH . 
D 4 HOH A 61 661 661 HOH HOH . 
D 4 HOH A 62 662 662 HOH HOH . 
D 4 HOH A 63 663 663 HOH HOH . 
D 4 HOH A 64 664 664 HOH HOH . 
D 4 HOH A 65 665 665 HOH HOH . 
D 4 HOH A 66 666 666 HOH HOH . 
D 4 HOH A 67 667 667 HOH HOH . 
D 4 HOH A 68 668 668 HOH HOH . 
D 4 HOH A 69 669 669 HOH HOH . 
D 4 HOH A 70 670 670 HOH HOH . 
D 4 HOH A 71 671 671 HOH HOH . 
D 4 HOH A 72 672 672 HOH HOH . 
D 4 HOH A 73 673 673 HOH HOH . 
D 4 HOH A 74 674 674 HOH HOH . 
D 4 HOH A 75 675 675 HOH HOH . 
D 4 HOH A 76 676 676 HOH HOH . 
D 4 HOH A 77 677 677 HOH HOH . 
D 4 HOH A 78 678 678 HOH HOH . 
D 4 HOH A 79 679 679 HOH HOH . 
D 4 HOH A 80 680 680 HOH HOH . 
D 4 HOH A 81 681 681 HOH HOH . 
D 4 HOH A 82 682 682 HOH HOH . 
D 4 HOH A 83 683 683 HOH HOH . 
D 4 HOH A 84 684 684 HOH HOH . 
D 4 HOH A 85 685 685 HOH HOH . 
D 4 HOH A 86 686 686 HOH HOH . 
D 4 HOH A 87 687 687 HOH HOH . 
D 4 HOH A 88 688 688 HOH HOH . 
D 4 HOH A 89 689 689 HOH HOH . 
D 4 HOH A 90 690 690 HOH HOH . 
D 4 HOH A 91 691 691 HOH HOH . 
D 4 HOH A 92 692 692 HOH HOH . 
D 4 HOH A 93 693 693 HOH HOH . 
D 4 HOH A 94 695 695 HOH HOH . 
D 4 HOH A 95 696 696 HOH HOH . 
D 4 HOH A 96 697 697 HOH HOH . 
D 4 HOH A 97 698 698 HOH HOH . 
D 4 HOH A 98 699 699 HOH HOH . 
D 4 HOH A 99 700 700 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . C 3 8.911 -12.381 -11.929 1 36.02 ? C1 SIN 401 A 1 
HETATM 2 O O1 SIN . . . C 3 9.921 -12.209 -11.239 1 35.64 ? O1 SIN 401 A 1 
HETATM 3 O O2 SIN . . . C 3 7.993 -12.382 -11.189 0.5 22.33 ? O2 SIN 401 A 1 
HETATM 4 C C2 SIN . . . C 3 9.094 -12.523 -13.442 1 33.11 ? C2 SIN 401 A 1 
HETATM 5 C C3 SIN . . . C 3 10.622 -12.458 -13.385 1 34.26 ? C3 SIN 401 A 1 
HETATM 6 C C4 SIN . . . C 3 11.174 -13.586 -12.589 1 34.18 ? C4 SIN 401 A 1 
HETATM 7 O O3 SIN . . . C 3 12.406 -13.498 -12.157 1 35.13 ? O3 SIN 401 A 1 
HETATM 8 O O4 SIN . . . C 3 10.434 -14.625 -12.316 1 34.14 ? O4 SIN 401 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#