data_2AZ8 # _model_server_result.job_id 5ru6k1kAbSMN-VqptxBb2A _model_server_result.datetime_utc '2024-11-25 10:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2az8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2AZ8 # _exptl.entry_id 2AZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 909.077 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 'Half of TL-3 molecule in the asymmetric unit' _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AZ8 _cell.length_a 62.608 _cell.length_b 62.608 _cell.length_c 81.928 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 54.618667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C50 H64 N6 O10' _chem_comp.formula_weight 909.077 _chem_comp.id 3TL _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TL-3, C2 symmetric inhibitor' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O8 3TL doub 1 n n C31 O9 3TL sing 2 n n C31 N4 3TL sing 3 n n O9 CA 3TL sing 4 n n CA C 3TL sing 5 n n CA HA1 3TL sing 6 n n CA HA2 3TL sing 7 n n C C13 3TL doub 8 n y C C17 3TL sing 9 n y C13 C14 3TL sing 10 n y C13 H13 3TL sing 11 n n C14 C15 3TL doub 12 n y C14 H14 3TL sing 13 n n C15 C16 3TL sing 14 n y C15 H15 3TL sing 15 n n C16 C17 3TL doub 16 n y C16 H16 3TL sing 17 n n C17 H17 3TL sing 18 n n N4 C18 3TL sing 19 n n N4 HN4 3TL sing 20 n n C18 C19 3TL sing 21 n n C18 C20 3TL sing 22 n n C18 H18 3TL sing 23 n n C19 O4 3TL doub 24 n n C19 N2 3TL sing 25 n n C20 H201 3TL sing 26 n n C20 H202 3TL sing 27 n n C20 H203 3TL sing 28 n n N2 C10 3TL sing 29 n n N2 HN2 3TL sing 30 n n C10 C11 3TL sing 31 n n C10 C12 3TL sing 32 n n C10 H10 3TL sing 33 n n C11 O2 3TL doub 34 n n C11 N1 3TL sing 35 n n C12 CG2 3TL sing 36 n n C12 CG1 3TL sing 37 n n C12 H12 3TL sing 38 n n CG2 HG21 3TL sing 39 n n CG2 HG22 3TL sing 40 n n CG2 HG23 3TL sing 41 n n CG1 HG11 3TL sing 42 n n CG1 HG12 3TL sing 43 n n CG1 HG13 3TL sing 44 n n C2 O1 3TL sing 45 n n C2 C1 3TL sing 46 n n C2 H2 3TL sing 47 n n C2 C52 3TL sing 48 n n O1 HO1 3TL sing 49 n n C1 N1 3TL sing 50 n n C1 C3 3TL sing 51 n n C1 H1 3TL sing 52 n n N1 HN1 3TL sing 53 n n C3 C4 3TL sing 54 n n C3 H31 3TL sing 55 n n C3 H32 3TL sing 56 n n C4 C5 3TL doub 57 n y C4 C9 3TL sing 58 n y C5 C6 3TL sing 59 n y C5 H5 3TL sing 60 n n C9 C8 3TL doub 61 n y C9 H9 3TL sing 62 n n C6 C7 3TL doub 63 n y C6 H6 3TL sing 64 n n C8 C7 3TL sing 65 n y C8 H8 3TL sing 66 n n C7 H7 3TL sing 67 n n N51 C51 3TL sing 68 n n N51 HN51 3TL sing 69 n n N51 C61 3TL sing 70 n n C51 C52 3TL sing 71 n n C51 C53 3TL sing 72 n n C51 H51 3TL sing 73 n n C52 O51 3TL sing 74 n n C52 H52 3TL sing 75 n n O51 HO51 3TL sing 76 n n C53 C54 3TL sing 77 n n C53 H531 3TL sing 78 n n C53 H532 3TL sing 79 n n C54 C55 3TL doub 80 n y C54 C59 3TL sing 81 n y C55 C56 3TL sing 82 n y C55 H55 3TL sing 83 n n C59 C58 3TL doub 84 n y C59 H59 3TL sing 85 n n C56 C57 3TL doub 86 n y C56 H56 3TL sing 87 n n C58 C57 3TL sing 88 n y C58 H58 3TL sing 89 n n C57 H57 3TL sing 90 n n N52 C60 3TL sing 91 n n N52 HN52 3TL sing 92 n n N52 C69 3TL sing 93 n n C60 C61 3TL sing 94 n n C60 C62 3TL sing 95 n n C60 H60 3TL sing 96 n n C61 O52 3TL doub 97 n n C62 CG6 3TL sing 98 n n C62 CG5 3TL sing 99 n n C62 H62 3TL sing 100 n n CG6 HG61 3TL sing 101 n n CG6 HG62 3TL sing 102 n n CG6 HG63 3TL sing 103 n n CG5 HG51 3TL sing 104 n n CG5 HG52 3TL sing 105 n n CG5 HG53 3TL sing 106 n n N54 C68 3TL sing 107 n n N54 HN54 3TL sing 108 n n N54 C81 3TL sing 109 n n C68 C69 3TL sing 110 n n C68 C70 3TL sing 111 n n C68 H68 3TL sing 112 n n C69 O54 3TL doub 113 n n C70 H701 3TL sing 114 n n C70 H702 3TL sing 115 n n C70 H703 3TL sing 116 n n C81 O58 3TL doub 117 n n C81 O59 3TL sing 118 n n O59 CA5 3TL sing 119 n n CA5 C50 3TL sing 120 n n CA5 HA51 3TL sing 121 n n CA5 HA52 3TL sing 122 n n C50 C63 3TL doub 123 n y C50 C67 3TL sing 124 n y C63 C64 3TL sing 125 n y C63 H63 3TL sing 126 n n C64 C65 3TL doub 127 n y C64 H64 3TL sing 128 n n C65 C66 3TL sing 129 n y C65 H65 3TL sing 130 n n C66 C67 3TL doub 131 n y C66 H66 3TL sing 132 n n C67 H67 3TL sing 133 n n # _atom_sites.entry_id 2AZ8 _atom_sites.fract_transf_matrix[1][1] 0.015972 _atom_sites.fract_transf_matrix[1][2] 0.009222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TL A 1 200 200 3TL CBZ . C 3 HOH A 1 100 1 HOH HOH . C 3 HOH A 2 101 2 HOH HOH . C 3 HOH A 3 102 3 HOH HOH . C 3 HOH A 4 103 4 HOH HOH . C 3 HOH A 5 104 5 HOH HOH . C 3 HOH A 6 105 6 HOH HOH . C 3 HOH A 7 106 7 HOH HOH . C 3 HOH A 8 107 8 HOH HOH . C 3 HOH A 9 108 9 HOH HOH . C 3 HOH A 10 109 10 HOH HOH . C 3 HOH A 11 110 11 HOH HOH . C 3 HOH A 12 111 12 HOH HOH . C 3 HOH A 13 112 13 HOH HOH . C 3 HOH A 14 113 14 HOH HOH . C 3 HOH A 15 114 15 HOH HOH . C 3 HOH A 16 115 16 HOH HOH . C 3 HOH A 17 116 17 HOH HOH . C 3 HOH A 18 117 18 HOH HOH . C 3 HOH A 19 118 19 HOH HOH . C 3 HOH A 20 119 20 HOH HOH . C 3 HOH A 21 120 21 HOH HOH . C 3 HOH A 22 121 22 HOH HOH . C 3 HOH A 23 122 23 HOH HOH . C 3 HOH A 24 123 24 HOH HOH . C 3 HOH A 25 124 25 HOH HOH . C 3 HOH A 26 125 26 HOH HOH . C 3 HOH A 27 126 27 HOH HOH . C 3 HOH A 28 127 28 HOH HOH . C 3 HOH A 29 128 29 HOH HOH . C 3 HOH A 30 129 30 HOH HOH . C 3 HOH A 31 130 31 HOH HOH . C 3 HOH A 32 131 32 HOH HOH . C 3 HOH A 33 132 33 HOH HOH . C 3 HOH A 34 133 34 HOH HOH . C 3 HOH A 35 134 35 HOH HOH . C 3 HOH A 36 135 36 HOH HOH . C 3 HOH A 37 136 37 HOH HOH . C 3 HOH A 38 137 38 HOH HOH . C 3 HOH A 39 138 39 HOH HOH . C 3 HOH A 40 139 40 HOH HOH . C 3 HOH A 41 140 41 HOH HOH . C 3 HOH A 42 141 42 HOH HOH . C 3 HOH A 43 142 43 HOH HOH . C 3 HOH A 44 143 44 HOH HOH . C 3 HOH A 45 144 45 HOH HOH . C 3 HOH A 46 145 46 HOH HOH . C 3 HOH A 47 146 47 HOH HOH . C 3 HOH A 48 147 48 HOH HOH . C 3 HOH A 49 148 49 HOH HOH . C 3 HOH A 50 149 51 HOH HOH . C 3 HOH A 51 150 52 HOH HOH . C 3 HOH A 52 151 53 HOH HOH . C 3 HOH A 53 152 54 HOH HOH . C 3 HOH A 54 153 55 HOH HOH . C 3 HOH A 55 154 56 HOH HOH . C 3 HOH A 56 155 57 HOH HOH . C 3 HOH A 57 156 58 HOH HOH . C 3 HOH A 58 157 59 HOH HOH . C 3 HOH A 59 158 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 3TL . . . B 2 -27.116 38.096 19.266 1 28.72 ? C31 3TL 200 A 1 HETATM 2 O O8 3TL . . . B 2 -27.205 39.334 19.257 1 34.27 ? O8 3TL 200 A 1 HETATM 3 O O9 3TL . . . B 2 -27.325 37.54 18.05 1 30.3 ? O9 3TL 200 A 1 HETATM 4 C CA 3TL . . . B 2 -28.213 38.118 17.126 1 32.67 ? CA 3TL 200 A 1 HETATM 5 C C 3TL . . . B 2 -29.613 38.491 17.322 1 32.3 ? C 3TL 200 A 1 HETATM 6 C C13 3TL . . . B 2 -29.966 39.71 16.543 1 34.14 ? C13 3TL 200 A 1 HETATM 7 C C14 3TL . . . B 2 -31.27 40.169 16.646 1 33.22 ? C14 3TL 200 A 1 HETATM 8 C C15 3TL . . . B 2 -32.202 39.43 17.507 1 34.09 ? C15 3TL 200 A 1 HETATM 9 C C16 3TL . . . B 2 -31.859 38.202 18.298 1 38.5 ? C16 3TL 200 A 1 HETATM 10 C C17 3TL . . . B 2 -30.498 37.71 18.198 1 36.98 ? C17 3TL 200 A 1 HETATM 11 N N4 3TL . . . B 2 -26.878 37.109 20.117 1 27.34 ? N4 3TL 200 A 1 HETATM 12 C C18 3TL . . . B 2 -26.623 37.271 21.417 1 26.35 ? C18 3TL 200 A 1 HETATM 13 C C19 3TL . . . B 2 -25.142 37.015 21.773 1 23.37 ? C19 3TL 200 A 1 HETATM 14 O O4 3TL . . . B 2 -24.503 36.003 21.389 1 24.61 ? O4 3TL 200 A 1 HETATM 15 C C20 3TL . . . B 2 -27.602 36.206 22.018 1 23.45 ? C20 3TL 200 A 1 HETATM 16 N N2 3TL . . . B 2 -24.695 37.997 22.57 1 24.46 ? N2 3TL 200 A 1 HETATM 17 C C10 3TL . . . B 2 -23.342 38.1 23.188 1 25.76 ? C10 3TL 200 A 1 HETATM 18 C C11 3TL . . . B 2 -23.547 38.473 24.648 1 26.36 ? C11 3TL 200 A 1 HETATM 19 O O2 3TL . . . B 2 -23.786 39.556 25.152 1 24.74 ? O2 3TL 200 A 1 HETATM 20 C C12 3TL . . . B 2 -22.433 39.053 22.377 1 25.26 ? C12 3TL 200 A 1 HETATM 21 C CG2 3TL . . . B 2 -22.222 38.621 20.906 1 24.03 ? CG2 3TL 200 A 1 HETATM 22 C CG1 3TL . . . B 2 -21.095 39.116 23.046 1 19.34 ? CG1 3TL 200 A 1 HETATM 23 C C2 3TL . . . B 2 -22.302 36.466 27.264 1 37.75 ? C2 3TL 200 A 1 HETATM 24 O O1 3TL . . . B 2 -22.065 35.214 26.808 1 42.18 ? O1 3TL 200 A 1 HETATM 25 C C1 3TL . . . B 2 -23.5 37.367 26.969 1 34.92 ? C1 3TL 200 A 1 HETATM 26 N N1 3TL . . . B 2 -23.403 37.418 25.45 1 28.73 ? N1 3TL 200 A 1 HETATM 27 C C3 3TL . . . B 2 -24.747 36.82 27.478 1 37.88 ? C3 3TL 200 A 1 HETATM 28 C C4 3TL . . . B 2 -26.062 37.172 27.074 1 41.17 ? C4 3TL 200 A 1 HETATM 29 C C5 3TL . . . B 2 -26.809 36.568 25.941 1 42.56 ? C5 3TL 200 A 1 HETATM 30 C C9 3TL . . . B 2 -26.589 38.176 27.88 1 41.62 ? C9 3TL 200 A 1 HETATM 31 C C6 3TL . . . B 2 -28.164 37.035 25.616 1 41.49 ? C6 3TL 200 A 1 HETATM 32 C C8 3TL . . . B 2 -27.883 38.654 27.613 1 43.12 ? C8 3TL 200 A 1 HETATM 33 C C7 3TL . . . B 2 -28.669 38.083 26.486 1 42.77 ? C7 3TL 200 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #