data_2AZT
#
_model_server_result.job_id            5NJUZbkcvq8uPj3ZQ5Td0g 
_model_server_result.datetime_utc      '2025-04-07 23:27:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2azt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2000}' 
#
_entry.id    2AZT 
#
_exptl.entry_id    2AZT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2AZT 
_cell.length_a            76.116 
_cell.length_b            83.279 
_cell.length_c            115.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AZT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_745 -x+2,-y-1,z -1 0 0 0 -1 0 0 0 1 152.232 -83.279 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 188 A CYS 187 1_555 C S2 BME . A BME 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale2 A SG CYS 285 A CYS 284 1_555 D S2 BME . A BME 1285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale3 B SG CYS 188 B CYS 187 1_555 G S2 BME . B BME 2188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale4 B SG CYS 249 B CYS 248 1_555 H S2 BME . B BME 2249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
covale ? covale5 B SG CYS 285 B CYS 284 1_555 I S2 BME . B BME 2285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 79 n n 
C1 O2 CIT sing 80 n n 
C1 C2 CIT sing 81 n n 
O2 HO2 CIT sing 82 n n 
C2 C3 CIT sing 83 n n 
C2 H21 CIT sing 84 n n 
C2 H22 CIT sing 85 n n 
C3 O7 CIT sing 86 n n 
C3 C4 CIT sing 87 n n 
C3 C6 CIT sing 88 n n 
O7 HO7 CIT sing 89 n n 
C4 C5 CIT sing 90 n n 
C4 H41 CIT sing 91 n n 
C4 H42 CIT sing 92 n n 
C5 O3 CIT doub 93 n n 
C5 O4 CIT sing 94 n n 
O4 HO4 CIT sing 95 n n 
C6 O5 CIT doub 96 n n 
C6 O6 CIT sing 97 n n 
O6 HO6 CIT sing 98 n n 
#
_atom_sites.entry_id                     2AZT 
_atom_sites.fract_transf_matrix[1][1]    0.013138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012008 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BME A 1 1188 1188 BME BME . 
D 2 BME A 1 1285 1285 BME BME . 
E 3 CIT A 1 1000 1000 CIT CIT . 
F 4 CL B 1 3000 3000 CL CL . 
G 2 BME B 1 2188 2188 BME BME . 
H 2 BME B 1 2249 2249 BME BME . 
I 2 BME B 1 2285 2285 BME BME . 
J 3 CIT B 1 2000 2000 CIT CIT . 
K 5 HOH A 1 1286 14 HOH HOH . 
K 5 HOH A 2 1287 18 HOH HOH . 
K 5 HOH A 3 1288 21 HOH HOH . 
K 5 HOH A 4 1289 22 HOH HOH . 
K 5 HOH A 5 1290 38 HOH HOH . 
L 5 HOH B 1 3001 1 HOH HOH . 
L 5 HOH B 2 3002 2 HOH HOH . 
L 5 HOH B 3 3003 3 HOH HOH . 
L 5 HOH B 4 3004 4 HOH HOH . 
L 5 HOH B 5 3005 5 HOH HOH . 
L 5 HOH B 6 3006 6 HOH HOH . 
L 5 HOH B 7 3007 7 HOH HOH . 
L 5 HOH B 8 3008 8 HOH HOH . 
L 5 HOH B 9 3009 9 HOH HOH . 
L 5 HOH B 10 3010 10 HOH HOH . 
L 5 HOH B 11 3011 11 HOH HOH . 
L 5 HOH B 12 3012 12 HOH HOH . 
L 5 HOH B 13 3013 13 HOH HOH . 
L 5 HOH B 14 3014 15 HOH HOH . 
L 5 HOH B 15 3015 16 HOH HOH . 
L 5 HOH B 16 3016 17 HOH HOH . 
L 5 HOH B 17 3017 19 HOH HOH . 
L 5 HOH B 18 3018 20 HOH HOH . 
L 5 HOH B 19 3019 23 HOH HOH . 
L 5 HOH B 20 3020 24 HOH HOH . 
L 5 HOH B 21 3021 25 HOH HOH . 
L 5 HOH B 22 3022 26 HOH HOH . 
L 5 HOH B 23 3023 27 HOH HOH . 
L 5 HOH B 24 3024 28 HOH HOH . 
L 5 HOH B 25 3025 29 HOH HOH . 
L 5 HOH B 26 3026 30 HOH HOH . 
L 5 HOH B 27 3027 31 HOH HOH . 
L 5 HOH B 28 3028 32 HOH HOH . 
L 5 HOH B 29 3029 33 HOH HOH . 
L 5 HOH B 30 3030 34 HOH HOH . 
L 5 HOH B 31 3031 35 HOH HOH . 
L 5 HOH B 32 3032 36 HOH HOH . 
L 5 HOH B 33 3033 37 HOH HOH . 
L 5 HOH B 34 3034 39 HOH HOH . 
L 5 HOH B 35 3035 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . J 3 60.675 -30.736 104.508 1 36.85 ? C1 CIT 2000 B 1 
HETATM 2 O O1 CIT . . . J 3 61.673 -31.415 104.105 1 38.51 ? O1 CIT 2000 B 1 
HETATM 3 O O2 CIT . . . J 3 59.721 -30.442 103.711 1 34.26 ? O2 CIT 2000 B 1 
HETATM 4 C C2 CIT . . . J 3 60.721 -30.294 105.967 1 35.6 ? C2 CIT 2000 B 1 
HETATM 5 C C3 CIT . . . J 3 59.518 -30.857 106.757 1 35.53 ? C3 CIT 2000 B 1 
HETATM 6 O O7 CIT . . . J 3 58.244 -30.202 106.373 1 36.36 ? O7 CIT 2000 B 1 
HETATM 7 C C4 CIT . . . J 3 59.267 -32.269 106.248 1 33.07 ? C4 CIT 2000 B 1 
HETATM 8 C C5 CIT . . . J 3 58.768 -33.072 107.435 1 37.14 ? C5 CIT 2000 B 1 
HETATM 9 O O3 CIT . . . J 3 59.412 -34.247 107.571 1 36.76 ? O3 CIT 2000 B 1 
HETATM 10 O O4 CIT . . . J 3 57.82 -32.521 108.19 1 28.35 ? O4 CIT 2000 B 1 
HETATM 11 C C6 CIT . . . J 3 59.796 -30.62 108.296 1 34.58 ? C6 CIT 2000 B 1 
HETATM 12 O O5 CIT . . . J 3 60.857 -30.969 108.877 1 31.11 ? O5 CIT 2000 B 1 
HETATM 13 O O6 CIT . . . J 3 58.943 -30.003 109.044 1 36.64 ? O6 CIT 2000 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           944 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#