data_2B04 # _model_server_result.job_id 54jAKpK1IlKTE5JYivLtkQ _model_server_result.datetime_utc '2024-10-13 04:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2B04 # _exptl.entry_id 2B04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.623 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'GLYCOCHENODEOXYCHOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B04 _cell.length_a 69.156 _cell.length_b 69.156 _cell.length_c 67.043 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 22.347667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C CA CA . A CA 130 1_555 A O TYR 28 A TYR 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 C CA CA . A CA 130 1_555 A OD1 ASP 49 A ASP 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc3 C CA CA . A CA 130 1_555 A O GLY 30 A GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 C CA CA . A CA 130 1_555 G O HOH . A HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 C CA CA . A CA 130 1_555 A OD2 ASP 49 A ASP 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc6 C CA CA . A CA 130 1_555 A O GLY 32 A GLY 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 C CA CA . A CA 130 1_555 G O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc8 D CA CA . A CA 131 1_555 A O SER 72 A SER 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 D CA CA . A CA 131 1_555 A OE1 GLU 71 A GLU 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc10 D CA CA . A CA 131 1_555 A OE1 GLU 92 A GLU 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc11 E CA CA . A CA 132 1_555 A O LYS 62 A LYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc12 E CA CA . A CA 132 1_555 G O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc13 E CA CA . A CA 132 1_555 F CL CL . A CL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc14 D CA CA . A CA 131 1_555 A OE1 GLU 92 A GLU 92 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc15 D CA CA . A CA 131 1_555 A OE1 GLU 71 A GLU 71 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc16 D CA CA . A CA 131 1_555 A O SER 72 A SER 72 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc17 E CA CA . A CA 132 1_555 F CL CL . A CL 135 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc18 E CA CA . A CA 132 1_555 A O LYS 62 A LYS 62 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc19 E CA CA . A CA 132 1_555 G O HOH . A HOH 214 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? # _chem_comp.formula 'C26 H43 N O5' _chem_comp.formula_weight 449.623 _chem_comp.id CHO _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCOCHENODEOXYCHOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B04 _atom_sites.fract_transf_matrix[1][1] 0.01446 _atom_sites.fract_transf_matrix[1][2] 0.008349 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CHO A 1 200 200 CHO GCD . C 3 CA A 1 130 130 CA CA . D 3 CA A 1 131 131 CA CA . E 3 CA A 1 132 132 CA CA . F 4 CL A 1 135 135 CL CL . G 5 HOH A 1 201 1 HOH HOH . G 5 HOH A 2 202 2 HOH HOH . G 5 HOH A 3 203 3 HOH HOH . G 5 HOH A 4 204 4 HOH HOH . G 5 HOH A 5 205 5 HOH HOH . G 5 HOH A 6 206 6 HOH HOH . G 5 HOH A 7 207 7 HOH HOH . G 5 HOH A 8 208 8 HOH HOH . G 5 HOH A 9 209 9 HOH HOH . G 5 HOH A 10 210 10 HOH HOH . G 5 HOH A 11 211 11 HOH HOH . G 5 HOH A 12 212 12 HOH HOH . G 5 HOH A 13 213 13 HOH HOH . G 5 HOH A 14 214 14 HOH HOH . G 5 HOH A 15 215 15 HOH HOH . G 5 HOH A 16 216 16 HOH HOH . G 5 HOH A 17 217 17 HOH HOH . G 5 HOH A 18 218 18 HOH HOH . G 5 HOH A 19 219 19 HOH HOH . G 5 HOH A 20 220 20 HOH HOH . G 5 HOH A 21 221 21 HOH HOH . G 5 HOH A 22 222 22 HOH HOH . G 5 HOH A 23 223 23 HOH HOH . G 5 HOH A 24 224 24 HOH HOH . G 5 HOH A 25 225 25 HOH HOH . G 5 HOH A 26 226 26 HOH HOH . G 5 HOH A 27 227 27 HOH HOH . G 5 HOH A 28 228 28 HOH HOH . G 5 HOH A 29 229 29 HOH HOH . G 5 HOH A 30 230 30 HOH HOH . G 5 HOH A 31 231 31 HOH HOH . G 5 HOH A 32 232 32 HOH HOH . G 5 HOH A 33 233 33 HOH HOH . G 5 HOH A 34 234 34 HOH HOH . G 5 HOH A 35 235 35 HOH HOH . G 5 HOH A 36 236 36 HOH HOH . G 5 HOH A 37 237 37 HOH HOH . G 5 HOH A 38 238 38 HOH HOH . G 5 HOH A 39 239 39 HOH HOH . G 5 HOH A 40 240 40 HOH HOH . G 5 HOH A 41 241 41 HOH HOH . G 5 HOH A 42 242 42 HOH HOH . G 5 HOH A 43 243 43 HOH HOH . G 5 HOH A 44 244 44 HOH HOH . G 5 HOH A 45 245 45 HOH HOH . G 5 HOH A 46 246 46 HOH HOH . G 5 HOH A 47 247 47 HOH HOH . G 5 HOH A 48 248 48 HOH HOH . G 5 HOH A 49 249 49 HOH HOH . G 5 HOH A 50 250 50 HOH HOH . G 5 HOH A 51 251 51 HOH HOH . G 5 HOH A 52 252 52 HOH HOH . G 5 HOH A 53 253 53 HOH HOH . G 5 HOH A 54 254 54 HOH HOH . G 5 HOH A 55 255 55 HOH HOH . G 5 HOH A 56 256 56 HOH HOH . G 5 HOH A 57 257 57 HOH HOH . G 5 HOH A 58 258 58 HOH HOH . G 5 HOH A 59 259 59 HOH HOH . G 5 HOH A 60 260 60 HOH HOH . G 5 HOH A 61 261 61 HOH HOH . G 5 HOH A 62 262 62 HOH HOH . G 5 HOH A 63 263 63 HOH HOH . G 5 HOH A 64 264 64 HOH HOH . G 5 HOH A 65 265 65 HOH HOH . G 5 HOH A 66 266 66 HOH HOH . G 5 HOH A 67 267 67 HOH HOH . G 5 HOH A 68 268 68 HOH HOH . G 5 HOH A 69 269 69 HOH HOH . G 5 HOH A 70 270 70 HOH HOH . G 5 HOH A 71 271 71 HOH HOH . G 5 HOH A 72 272 72 HOH HOH . G 5 HOH A 73 273 73 HOH HOH . G 5 HOH A 74 274 74 HOH HOH . G 5 HOH A 75 275 75 HOH HOH . G 5 HOH A 76 276 76 HOH HOH . G 5 HOH A 77 277 77 HOH HOH . G 5 HOH A 78 278 78 HOH HOH . G 5 HOH A 79 279 79 HOH HOH . G 5 HOH A 80 280 80 HOH HOH . G 5 HOH A 81 281 81 HOH HOH . G 5 HOH A 82 282 82 HOH HOH . G 5 HOH A 83 283 83 HOH HOH . G 5 HOH A 84 284 84 HOH HOH . G 5 HOH A 85 285 85 HOH HOH . G 5 HOH A 86 286 86 HOH HOH . G 5 HOH A 87 287 87 HOH HOH . G 5 HOH A 88 288 88 HOH HOH . G 5 HOH A 89 289 89 HOH HOH . G 5 HOH A 90 290 90 HOH HOH . G 5 HOH A 91 291 91 HOH HOH . G 5 HOH A 92 292 92 HOH HOH . G 5 HOH A 93 293 93 HOH HOH . G 5 HOH A 94 294 94 HOH HOH . G 5 HOH A 95 295 95 HOH HOH . G 5 HOH A 96 296 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CHO . . . B 2 -1.547 35.91 6.274 1 46.62 ? C1 CHO 200 A 1 HETATM 2 C C2 CHO . . . B 2 -1.007 35.11 7.564 1 46.1 ? C2 CHO 200 A 1 HETATM 3 C C3 CHO . . . B 2 -0.487 36.162 8.625 1 45.37 ? C3 CHO 200 A 1 HETATM 4 O O3 CHO . . . B 2 0.003 35.453 9.791 1 48.69 ? O3 CHO 200 A 1 HETATM 5 C C4 CHO . . . B 2 0.69 37.068 8.039 1 46.53 ? C4 CHO 200 A 1 HETATM 6 C C5 CHO . . . B 2 0.214 37.881 6.703 1 46.7 ? C5 CHO 200 A 1 HETATM 7 C C6 CHO . . . B 2 1.389 38.793 6.026 1 48.17 ? C6 CHO 200 A 1 HETATM 8 C C7 CHO . . . B 2 2.597 37.94 5.471 1 49.51 ? C7 CHO 200 A 1 HETATM 9 O O7 CHO . . . B 2 3.43 37.266 6.474 1 50.96 ? O7 CHO 200 A 1 HETATM 10 C C8 CHO . . . B 2 2.082 36.822 4.381 1 49.76 ? C8 CHO 200 A 1 HETATM 11 C C9 CHO . . . B 2 0.919 35.852 5.069 1 48.69 ? C9 CHO 200 A 1 HETATM 12 C C10 CHO . . . B 2 -0.375 36.789 5.577 1 47.19 ? C10 CHO 200 A 1 HETATM 13 C C11 CHO . . . B 2 0.439 34.72 3.927 1 48.91 ? C11 CHO 200 A 1 HETATM 14 C C12 CHO . . . B 2 1.799 34.006 3.635 1 50.35 ? C12 CHO 200 A 1 HETATM 15 C C13 CHO . . . B 2 2.958 34.863 2.827 1 51.61 ? C13 CHO 200 A 1 HETATM 16 C C14 CHO . . . B 2 3.363 35.918 3.856 1 50.75 ? C14 CHO 200 A 1 HETATM 17 C C15 CHO . . . B 2 4.53 36.74 3.129 1 52.18 ? C15 CHO 200 A 1 HETATM 18 C C16 CHO . . . B 2 5.203 35.576 2.218 1 53.38 ? C16 CHO 200 A 1 HETATM 19 C C17 CHO . . . B 2 4.32 34.232 2.556 1 53.75 ? C17 CHO 200 A 1 HETATM 20 C C18 CHO . . . B 2 2.182 35.412 1.437 1 51.27 ? C18 CHO 200 A 1 HETATM 21 C C19 CHO . . . B 2 -1.213 37.514 4.381 1 45.93 ? C19 CHO 200 A 1 HETATM 22 C C20 CHO . . . B 2 4.382 33.029 1.423 1 57.03 ? C20 CHO 200 A 1 HETATM 23 C C21 CHO . . . B 2 3.567 31.702 1.565 1 58.31 ? C21 CHO 200 A 1 HETATM 24 C C22 CHO . . . B 2 5.892 32.53 1.257 1 61.13 ? C22 CHO 200 A 1 HETATM 25 C C23 CHO . . . B 2 6.843 32.04 2.478 1 65.61 ? C23 CHO 200 A 1 HETATM 26 C C24 CHO . . . B 2 8.271 31.781 2.306 1 69.51 ? C24 CHO 200 A 1 HETATM 27 O O24 CHO . . . B 2 8.619 31.556 0.997 1 71.21 ? O24 CHO 200 A 1 HETATM 28 N N25 CHO . . . B 2 9.129 31.761 3.267 1 71.68 ? N25 CHO 200 A 1 HETATM 29 C C26 CHO . . . B 2 10.591 31.5 3.098 1 75.3 ? C26 CHO 200 A 1 HETATM 30 C C27 CHO . . . B 2 10.979 30.15 2.629 1 77.42 ? C27 CHO 200 A 1 HETATM 31 O OT1 CHO . . . B 2 10.956 29.177 3.43 1 78.34 ? OT1 CHO 200 A 1 HETATM 32 O OT2 CHO . . . B 2 11.329 30.018 1.422 1 77.65 ? OT2 CHO 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #