data_2B07 # _model_server_result.job_id bVYDCzWNAtzGyF1ObPDJdg _model_server_result.datetime_utc '2024-12-21 12:51:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 2B07 # _exptl.entry_id 2B07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.662 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-{[1-(BENZYLSULFONYL)PIPERIDIN-4-YL]AMINO}-3-(CARBOXYMETHOXY)THIENO[3,2-B][1]BENZOTHIOPHENE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B07 _cell.length_a 88.239 _cell.length_b 88.239 _cell.length_c 104.063 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H24 N2 O7 S3' _chem_comp.formula_weight 560.662 _chem_comp.id 598 _chem_comp.mon_nstd_flag . _chem_comp.name '6-{[1-(BENZYLSULFONYL)PIPERIDIN-4-YL]AMINO}-3-(CARBOXYMETHOXY)THIENO[3,2-B][1]BENZOTHIOPHENE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C2 598 sing 1 n y S1 C5 598 sing 2 n y C2 C3 598 doub 3 n y C2 C6 598 sing 4 n n C3 C4 598 sing 5 n y C3 O9 598 sing 6 n n C4 C5 598 doub 7 n y C4 S18 598 sing 8 n y C5 C20 598 sing 9 n y C6 O7 598 sing 10 n n C6 O8 598 doub 11 n n O7 HO7 598 sing 12 n n O9 C10 598 sing 13 n n C10 C11 598 sing 14 n n C10 H101 598 sing 15 n n C10 H102 598 sing 16 n n C11 O14 598 sing 17 n n C11 O15 598 doub 18 n n O14 H14 598 sing 19 n n S18 C19 598 sing 20 n y C19 C20 598 doub 21 n y C19 C21 598 sing 22 n y C20 C24 598 sing 23 n y C21 C22 598 doub 24 n y C21 H21 598 sing 25 n n C22 C23 598 sing 26 n y C22 N28 598 sing 27 n n C23 C24 598 doub 28 n y C23 H23 598 sing 29 n n C24 H24 598 sing 30 n n N28 C29 598 sing 31 n n N28 H28 598 sing 32 n n C29 C30 598 sing 33 n n C29 C34 598 sing 34 n n C29 H29 598 sing 35 n n C30 C31 598 sing 36 n n C30 H301 598 sing 37 n n C30 H302 598 sing 38 n n C31 N32 598 sing 39 n n C31 H311 598 sing 40 n n C31 H312 598 sing 41 n n N32 C33 598 sing 42 n n N32 S44 598 sing 43 n n C33 C34 598 sing 44 n n C33 H331 598 sing 45 n n C33 H332 598 sing 46 n n C34 H341 598 sing 47 n n C34 H342 598 sing 48 n n S44 C45 598 sing 49 n n S44 O59 598 doub 50 n n S44 O60 598 doub 51 n n C45 C46 598 sing 52 n n C45 H451 598 sing 53 n n C45 H452 598 sing 54 n n C46 C49 598 doub 55 n y C46 C53 598 sing 56 n y C49 C50 598 sing 57 n y C49 H49 598 sing 58 n n C50 C51 598 doub 59 n y C50 H50 598 sing 60 n n C51 C52 598 sing 61 n y C51 H51 598 sing 62 n n C52 C53 598 doub 63 n y C52 H52 598 sing 64 n n C53 H53 598 sing 65 n n # _atom_sites.entry_id 2B07 _atom_sites.fract_transf_matrix[1][1] 0.011333 _atom_sites.fract_transf_matrix[1][2] 0.006543 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 598 A 1 301 301 598 598 . C 3 HOH A 1 302 1 HOH HOH . C 3 HOH A 2 303 2 HOH HOH . C 3 HOH A 3 304 3 HOH HOH . C 3 HOH A 4 305 4 HOH HOH . C 3 HOH A 5 306 5 HOH HOH . C 3 HOH A 6 307 6 HOH HOH . C 3 HOH A 7 308 7 HOH HOH . C 3 HOH A 8 309 8 HOH HOH . C 3 HOH A 9 310 9 HOH HOH . C 3 HOH A 10 311 10 HOH HOH . C 3 HOH A 11 312 11 HOH HOH . C 3 HOH A 12 313 12 HOH HOH . C 3 HOH A 13 314 13 HOH HOH . C 3 HOH A 14 315 14 HOH HOH . C 3 HOH A 15 316 15 HOH HOH . C 3 HOH A 16 317 16 HOH HOH . C 3 HOH A 17 318 17 HOH HOH . C 3 HOH A 18 319 18 HOH HOH . C 3 HOH A 19 320 19 HOH HOH . C 3 HOH A 20 321 20 HOH HOH . C 3 HOH A 21 322 21 HOH HOH . C 3 HOH A 22 323 22 HOH HOH . C 3 HOH A 23 324 23 HOH HOH . C 3 HOH A 24 325 24 HOH HOH . C 3 HOH A 25 326 25 HOH HOH . C 3 HOH A 26 327 26 HOH HOH . C 3 HOH A 27 328 27 HOH HOH . C 3 HOH A 28 329 28 HOH HOH . C 3 HOH A 29 330 29 HOH HOH . C 3 HOH A 30 331 30 HOH HOH . C 3 HOH A 31 332 31 HOH HOH . C 3 HOH A 32 333 32 HOH HOH . C 3 HOH A 33 334 33 HOH HOH . C 3 HOH A 34 335 34 HOH HOH . C 3 HOH A 35 336 35 HOH HOH . C 3 HOH A 36 337 36 HOH HOH . C 3 HOH A 37 338 37 HOH HOH . C 3 HOH A 38 339 38 HOH HOH . C 3 HOH A 39 340 39 HOH HOH . C 3 HOH A 40 341 40 HOH HOH . C 3 HOH A 41 342 41 HOH HOH . C 3 HOH A 42 343 42 HOH HOH . C 3 HOH A 43 344 43 HOH HOH . C 3 HOH A 44 345 44 HOH HOH . C 3 HOH A 45 346 45 HOH HOH . C 3 HOH A 46 347 46 HOH HOH . C 3 HOH A 47 348 47 HOH HOH . C 3 HOH A 48 349 48 HOH HOH . C 3 HOH A 49 350 49 HOH HOH . C 3 HOH A 50 351 50 HOH HOH . C 3 HOH A 51 352 51 HOH HOH . C 3 HOH A 52 353 52 HOH HOH . C 3 HOH A 53 354 53 HOH HOH . C 3 HOH A 54 355 54 HOH HOH . C 3 HOH A 55 356 55 HOH HOH . C 3 HOH A 56 357 56 HOH HOH . C 3 HOH A 57 358 57 HOH HOH . C 3 HOH A 58 359 58 HOH HOH . C 3 HOH A 59 360 59 HOH HOH . C 3 HOH A 60 361 60 HOH HOH . C 3 HOH A 61 362 61 HOH HOH . C 3 HOH A 62 363 62 HOH HOH . C 3 HOH A 63 364 63 HOH HOH . C 3 HOH A 64 365 64 HOH HOH . C 3 HOH A 65 366 65 HOH HOH . C 3 HOH A 66 367 66 HOH HOH . C 3 HOH A 67 368 67 HOH HOH . C 3 HOH A 68 369 68 HOH HOH . C 3 HOH A 69 370 69 HOH HOH . C 3 HOH A 70 371 70 HOH HOH . C 3 HOH A 71 372 71 HOH HOH . C 3 HOH A 72 373 72 HOH HOH . C 3 HOH A 73 374 73 HOH HOH . C 3 HOH A 74 375 74 HOH HOH . C 3 HOH A 75 376 75 HOH HOH . C 3 HOH A 76 377 76 HOH HOH . C 3 HOH A 77 378 77 HOH HOH . C 3 HOH A 78 379 78 HOH HOH . C 3 HOH A 79 380 79 HOH HOH . C 3 HOH A 80 381 80 HOH HOH . C 3 HOH A 81 382 81 HOH HOH . C 3 HOH A 82 383 82 HOH HOH . C 3 HOH A 83 384 83 HOH HOH . C 3 HOH A 84 385 84 HOH HOH . C 3 HOH A 85 386 85 HOH HOH . C 3 HOH A 86 387 86 HOH HOH . C 3 HOH A 87 388 87 HOH HOH . C 3 HOH A 88 389 88 HOH HOH . C 3 HOH A 89 390 89 HOH HOH . C 3 HOH A 90 391 90 HOH HOH . C 3 HOH A 91 392 91 HOH HOH . C 3 HOH A 92 393 92 HOH HOH . C 3 HOH A 93 394 93 HOH HOH . C 3 HOH A 94 395 94 HOH HOH . C 3 HOH A 95 396 95 HOH HOH . C 3 HOH A 96 397 97 HOH HOH . C 3 HOH A 97 398 99 HOH HOH . C 3 HOH A 98 399 100 HOH HOH . C 3 HOH A 99 400 101 HOH HOH . C 3 HOH A 100 401 102 HOH HOH . C 3 HOH A 101 402 103 HOH HOH . C 3 HOH A 102 403 104 HOH HOH . C 3 HOH A 103 404 106 HOH HOH . C 3 HOH A 104 405 108 HOH HOH . C 3 HOH A 105 406 109 HOH HOH . C 3 HOH A 106 407 110 HOH HOH . C 3 HOH A 107 408 111 HOH HOH . C 3 HOH A 108 409 112 HOH HOH . C 3 HOH A 109 410 113 HOH HOH . C 3 HOH A 110 411 114 HOH HOH . C 3 HOH A 111 412 115 HOH HOH . C 3 HOH A 112 413 116 HOH HOH . C 3 HOH A 113 414 117 HOH HOH . C 3 HOH A 114 415 120 HOH HOH . C 3 HOH A 115 416 121 HOH HOH . C 3 HOH A 116 417 122 HOH HOH . C 3 HOH A 117 418 123 HOH HOH . C 3 HOH A 118 419 125 HOH HOH . C 3 HOH A 119 420 126 HOH HOH . C 3 HOH A 120 421 127 HOH HOH . C 3 HOH A 121 422 128 HOH HOH . C 3 HOH A 122 423 130 HOH HOH . C 3 HOH A 123 424 131 HOH HOH . C 3 HOH A 124 425 132 HOH HOH . C 3 HOH A 125 426 133 HOH HOH . C 3 HOH A 126 427 134 HOH HOH . C 3 HOH A 127 428 135 HOH HOH . C 3 HOH A 128 429 136 HOH HOH . C 3 HOH A 129 430 137 HOH HOH . C 3 HOH A 130 431 138 HOH HOH . C 3 HOH A 131 432 140 HOH HOH . C 3 HOH A 132 433 141 HOH HOH . C 3 HOH A 133 434 142 HOH HOH . C 3 HOH A 134 435 143 HOH HOH . C 3 HOH A 135 436 144 HOH HOH . C 3 HOH A 136 437 145 HOH HOH . C 3 HOH A 137 438 146 HOH HOH . C 3 HOH A 138 439 147 HOH HOH . C 3 HOH A 139 440 148 HOH HOH . C 3 HOH A 140 441 150 HOH HOH . C 3 HOH A 141 442 152 HOH HOH . C 3 HOH A 142 443 153 HOH HOH . C 3 HOH A 143 444 154 HOH HOH . C 3 HOH A 144 445 155 HOH HOH . C 3 HOH A 145 446 156 HOH HOH . C 3 HOH A 146 447 157 HOH HOH . C 3 HOH A 147 448 159 HOH HOH . C 3 HOH A 148 449 160 HOH HOH . C 3 HOH A 149 450 161 HOH HOH . C 3 HOH A 150 451 162 HOH HOH . C 3 HOH A 151 452 164 HOH HOH . C 3 HOH A 152 453 166 HOH HOH . C 3 HOH A 153 454 167 HOH HOH . C 3 HOH A 154 455 168 HOH HOH . C 3 HOH A 155 456 170 HOH HOH . C 3 HOH A 156 457 171 HOH HOH . C 3 HOH A 157 458 172 HOH HOH . C 3 HOH A 158 459 174 HOH HOH . C 3 HOH A 159 460 176 HOH HOH . C 3 HOH A 160 461 178 HOH HOH . C 3 HOH A 161 462 182 HOH HOH . C 3 HOH A 162 463 184 HOH HOH . C 3 HOH A 163 464 185 HOH HOH . C 3 HOH A 164 465 186 HOH HOH . C 3 HOH A 165 466 187 HOH HOH . C 3 HOH A 166 467 189 HOH HOH . C 3 HOH A 167 468 191 HOH HOH . C 3 HOH A 168 469 197 HOH HOH . C 3 HOH A 169 470 202 HOH HOH . C 3 HOH A 170 471 205 HOH HOH . C 3 HOH A 171 472 206 HOH HOH . C 3 HOH A 172 473 209 HOH HOH . C 3 HOH A 173 474 210 HOH HOH . C 3 HOH A 174 475 213 HOH HOH . C 3 HOH A 175 476 214 HOH HOH . C 3 HOH A 176 477 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 598 . . . B 2 44.362 14.118 0.52 1 56.82 ? S1 598 301 A 1 HETATM 2 C C2 598 . . . B 2 44.683 15.334 1.685 1 57.34 ? C2 598 301 A 1 HETATM 3 C C3 598 . . . B 2 45.591 14.969 2.649 1 56.98 ? C3 598 301 A 1 HETATM 4 C C4 598 . . . B 2 46.014 13.629 2.437 1 57.39 ? C4 598 301 A 1 HETATM 5 C C5 598 . . . B 2 45.439 13.049 1.343 1 57.26 ? C5 598 301 A 1 HETATM 6 C C6 598 . . . B 2 43.967 16.716 1.523 1 57.2 ? C6 598 301 A 1 HETATM 7 O O7 598 . . . B 2 44.037 17.562 2.467 1 57.68 ? O7 598 301 A 1 HETATM 8 O O8 598 . . . B 2 43.38 16.841 0.412 1 56.7 ? O8 598 301 A 1 HETATM 9 O O9 598 . . . B 2 46.022 15.741 3.679 1 56.88 ? O9 598 301 A 1 HETATM 10 C C10 598 . . . B 2 47.268 16.415 3.451 1 55.07 ? C10 598 301 A 1 HETATM 11 C C11 598 . . . B 2 47.572 17.199 4.727 1 53.56 ? C11 598 301 A 1 HETATM 12 O O14 598 . . . B 2 46.696 17.16 5.632 1 55.25 ? O14 598 301 A 1 HETATM 13 O O15 598 . . . B 2 48.673 17.786 4.744 1 51.25 ? O15 598 301 A 1 HETATM 14 S S18 598 . . . B 2 47.117 12.555 3.231 1 56.59 ? S18 598 301 A 1 HETATM 15 C C19 598 . . . B 2 46.762 11.325 2.064 1 57.21 ? C19 598 301 A 1 HETATM 16 C C20 598 . . . B 2 45.84 11.711 1.093 1 57.18 ? C20 598 301 A 1 HETATM 17 C C21 598 . . . B 2 47.31 10.027 2.014 1 57.1 ? C21 598 301 A 1 HETATM 18 C C22 598 . . . B 2 46.934 9.11 1.005 1 57.25 ? C22 598 301 A 1 HETATM 19 C C23 598 . . . B 2 46.013 9.523 0.036 1 57.11 ? C23 598 301 A 1 HETATM 20 C C24 598 . . . B 2 45.459 10.814 0.065 1 57.01 ? C24 598 301 A 1 HETATM 21 N N28 598 . . . B 2 47.516 7.851 1.03 1 58.05 ? N28 598 301 A 1 HETATM 22 C C29 598 . . . B 2 48.572 7.451 1.944 1 62 ? C29 598 301 A 1 HETATM 23 C C30 598 . . . B 2 47.941 6.952 3.265 1 64.58 ? C30 598 301 A 1 HETATM 24 C C31 598 . . . B 2 49.019 6.484 4.237 1 67.04 ? C31 598 301 A 1 HETATM 25 N N32 598 . . . B 2 49.84 5.43 3.54 1 69.38 ? N32 598 301 A 1 HETATM 26 C C33 598 . . . B 2 50.537 5.932 2.297 1 67.09 ? C33 598 301 A 1 HETATM 27 C C34 598 . . . B 2 49.468 6.381 1.303 1 64.71 ? C34 598 301 A 1 HETATM 28 S S44 598 . . . B 2 50.672 4.294 4.548 1 71.14 ? S44 598 301 A 1 HETATM 29 C C45 598 . . . B 2 49.658 2.83 4.31 1 73.18 ? C45 598 301 A 1 HETATM 30 C C46 598 . . . B 2 49.315 2.674 2.849 1 74.26 ? C46 598 301 A 1 HETATM 31 C C49 598 . . . B 2 48.025 2.994 2.382 1 74.65 ? C49 598 301 A 1 HETATM 32 C C50 598 . . . B 2 47.695 2.855 1.024 1 74.74 ? C50 598 301 A 1 HETATM 33 C C51 598 . . . B 2 48.657 2.398 0.119 1 74.89 ? C51 598 301 A 1 HETATM 34 C C52 598 . . . B 2 49.948 2.076 0.567 1 75.66 ? C52 598 301 A 1 HETATM 35 C C53 598 . . . B 2 50.276 2.212 1.925 1 75.1 ? C53 598 301 A 1 HETATM 36 O O59 598 . . . B 2 50.568 4.726 5.928 1 71.54 ? O59 598 301 A 1 HETATM 37 O O60 598 . . . B 2 51.981 4.069 3.954 1 71.51 ? O60 598 301 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #