data_2B0S # _model_server_result.job_id IZ8YSdLWrVefyMcQlpuqCw _model_server_result.datetime_utc '2024-10-12 07:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 2B0S # _exptl.entry_id 2B0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B0S _cell.length_a 60.471 _cell.length_b 60.471 _cell.length_c 275.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 A SG CYS 140 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf4 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 2B0S _atom_sites.fract_transf_matrix[1][1] 0.016537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO L 1 702 702 EDO EDO . E 5 ACY L 1 503 503 ACY ACY . F 4 EDO H 1 703 703 EDO EDO . G 5 ACY H 1 501 501 ACY ACY . H 5 ACY H 1 502 502 ACY ACY . I 6 HOH L 1 703 3 HOH HOH . I 6 HOH L 2 704 4 HOH HOH . I 6 HOH L 3 705 11 HOH HOH . I 6 HOH L 4 706 13 HOH HOH . I 6 HOH L 5 707 16 HOH HOH . I 6 HOH L 6 708 29 HOH HOH . I 6 HOH L 7 709 37 HOH HOH . I 6 HOH L 8 710 38 HOH HOH . I 6 HOH L 9 711 41 HOH HOH . I 6 HOH L 10 712 44 HOH HOH . I 6 HOH L 11 713 47 HOH HOH . I 6 HOH L 12 714 48 HOH HOH . I 6 HOH L 13 715 50 HOH HOH . I 6 HOH L 14 716 54 HOH HOH . I 6 HOH L 15 717 59 HOH HOH . I 6 HOH L 16 718 60 HOH HOH . I 6 HOH L 17 719 61 HOH HOH . I 6 HOH L 18 720 62 HOH HOH . I 6 HOH L 19 721 63 HOH HOH . I 6 HOH L 20 722 66 HOH HOH . I 6 HOH L 21 723 67 HOH HOH . I 6 HOH L 22 724 72 HOH HOH . I 6 HOH L 23 725 73 HOH HOH . I 6 HOH L 24 726 78 HOH HOH . I 6 HOH L 25 727 80 HOH HOH . I 6 HOH L 26 728 86 HOH HOH . I 6 HOH L 27 729 87 HOH HOH . I 6 HOH L 28 730 93 HOH HOH . I 6 HOH L 29 731 96 HOH HOH . I 6 HOH L 30 732 97 HOH HOH . I 6 HOH L 31 733 99 HOH HOH . I 6 HOH L 32 734 102 HOH HOH . I 6 HOH L 33 735 104 HOH HOH . I 6 HOH L 34 736 105 HOH HOH . I 6 HOH L 35 737 109 HOH HOH . I 6 HOH L 36 738 110 HOH HOH . I 6 HOH L 37 739 115 HOH HOH . I 6 HOH L 38 740 118 HOH HOH . I 6 HOH L 39 741 119 HOH HOH . I 6 HOH L 40 742 120 HOH HOH . I 6 HOH L 41 743 121 HOH HOH . I 6 HOH L 42 744 122 HOH HOH . I 6 HOH L 43 745 125 HOH HOH . I 6 HOH L 44 746 126 HOH HOH . I 6 HOH L 45 747 128 HOH HOH . I 6 HOH L 46 748 131 HOH HOH . I 6 HOH L 47 749 132 HOH HOH . I 6 HOH L 48 750 133 HOH HOH . I 6 HOH L 49 751 136 HOH HOH . I 6 HOH L 50 752 137 HOH HOH . I 6 HOH L 51 753 142 HOH HOH . I 6 HOH L 52 754 144 HOH HOH . I 6 HOH L 53 755 150 HOH HOH . I 6 HOH L 54 756 152 HOH HOH . I 6 HOH L 55 757 154 HOH HOH . I 6 HOH L 56 758 156 HOH HOH . I 6 HOH L 57 759 157 HOH HOH . I 6 HOH L 58 760 160 HOH HOH . I 6 HOH L 59 761 162 HOH HOH . I 6 HOH L 60 762 163 HOH HOH . I 6 HOH L 61 763 168 HOH HOH . I 6 HOH L 62 764 169 HOH HOH . I 6 HOH L 63 765 170 HOH HOH . I 6 HOH L 64 766 173 HOH HOH . I 6 HOH L 65 767 174 HOH HOH . I 6 HOH L 66 768 175 HOH HOH . I 6 HOH L 67 769 176 HOH HOH . I 6 HOH L 68 770 177 HOH HOH . I 6 HOH L 69 771 188 HOH HOH . I 6 HOH L 70 772 189 HOH HOH . I 6 HOH L 71 773 190 HOH HOH . J 6 HOH H 1 704 1 HOH HOH . J 6 HOH H 2 705 2 HOH HOH . J 6 HOH H 3 706 5 HOH HOH . J 6 HOH H 4 707 6 HOH HOH . J 6 HOH H 5 708 8 HOH HOH . J 6 HOH H 6 709 10 HOH HOH . J 6 HOH H 7 710 12 HOH HOH . J 6 HOH H 8 711 14 HOH HOH . J 6 HOH H 9 712 17 HOH HOH . J 6 HOH H 10 713 18 HOH HOH . J 6 HOH H 11 714 19 HOH HOH . J 6 HOH H 12 715 20 HOH HOH . J 6 HOH H 13 716 21 HOH HOH . J 6 HOH H 14 717 22 HOH HOH . J 6 HOH H 15 718 23 HOH HOH . J 6 HOH H 16 719 24 HOH HOH . J 6 HOH H 17 720 25 HOH HOH . J 6 HOH H 18 721 26 HOH HOH . J 6 HOH H 19 722 27 HOH HOH . J 6 HOH H 20 723 28 HOH HOH . J 6 HOH H 21 724 30 HOH HOH . J 6 HOH H 22 725 31 HOH HOH . J 6 HOH H 23 726 32 HOH HOH . J 6 HOH H 24 727 33 HOH HOH . J 6 HOH H 25 728 34 HOH HOH . J 6 HOH H 26 729 35 HOH HOH . J 6 HOH H 27 730 39 HOH HOH . J 6 HOH H 28 731 40 HOH HOH . J 6 HOH H 29 732 42 HOH HOH . J 6 HOH H 30 733 43 HOH HOH . J 6 HOH H 31 734 45 HOH HOH . J 6 HOH H 32 735 46 HOH HOH . J 6 HOH H 33 736 49 HOH HOH . J 6 HOH H 34 737 51 HOH HOH . J 6 HOH H 35 738 52 HOH HOH . J 6 HOH H 36 739 53 HOH HOH . J 6 HOH H 37 740 55 HOH HOH . J 6 HOH H 38 741 56 HOH HOH . J 6 HOH H 39 742 57 HOH HOH . J 6 HOH H 40 743 58 HOH HOH . J 6 HOH H 41 744 64 HOH HOH . J 6 HOH H 42 745 65 HOH HOH . J 6 HOH H 43 746 68 HOH HOH . J 6 HOH H 44 747 69 HOH HOH . J 6 HOH H 45 748 70 HOH HOH . J 6 HOH H 46 749 71 HOH HOH . J 6 HOH H 47 750 74 HOH HOH . J 6 HOH H 48 751 75 HOH HOH . J 6 HOH H 49 752 76 HOH HOH . J 6 HOH H 50 753 77 HOH HOH . J 6 HOH H 51 754 79 HOH HOH . J 6 HOH H 52 755 81 HOH HOH . J 6 HOH H 53 756 82 HOH HOH . J 6 HOH H 54 757 83 HOH HOH . J 6 HOH H 55 758 84 HOH HOH . J 6 HOH H 56 759 85 HOH HOH . J 6 HOH H 57 760 88 HOH HOH . J 6 HOH H 58 761 89 HOH HOH . J 6 HOH H 59 762 91 HOH HOH . J 6 HOH H 60 763 92 HOH HOH . J 6 HOH H 61 764 94 HOH HOH . J 6 HOH H 62 765 95 HOH HOH . J 6 HOH H 63 766 98 HOH HOH . J 6 HOH H 64 767 101 HOH HOH . J 6 HOH H 65 768 103 HOH HOH . J 6 HOH H 66 769 106 HOH HOH . J 6 HOH H 67 770 107 HOH HOH . J 6 HOH H 68 771 108 HOH HOH . J 6 HOH H 69 772 111 HOH HOH . J 6 HOH H 70 773 112 HOH HOH . J 6 HOH H 71 774 113 HOH HOH . J 6 HOH H 72 775 114 HOH HOH . J 6 HOH H 73 776 116 HOH HOH . J 6 HOH H 74 777 117 HOH HOH . J 6 HOH H 75 778 123 HOH HOH . J 6 HOH H 76 779 124 HOH HOH . J 6 HOH H 77 780 127 HOH HOH . J 6 HOH H 78 781 129 HOH HOH . J 6 HOH H 79 782 130 HOH HOH . J 6 HOH H 80 783 134 HOH HOH . J 6 HOH H 81 784 135 HOH HOH . J 6 HOH H 82 785 138 HOH HOH . J 6 HOH H 83 786 139 HOH HOH . J 6 HOH H 84 787 140 HOH HOH . J 6 HOH H 85 788 141 HOH HOH . J 6 HOH H 86 789 143 HOH HOH . J 6 HOH H 87 790 145 HOH HOH . J 6 HOH H 88 791 146 HOH HOH . J 6 HOH H 89 792 147 HOH HOH . J 6 HOH H 90 793 148 HOH HOH . J 6 HOH H 91 794 151 HOH HOH . J 6 HOH H 92 795 153 HOH HOH . J 6 HOH H 93 796 158 HOH HOH . J 6 HOH H 94 797 159 HOH HOH . J 6 HOH H 95 798 164 HOH HOH . J 6 HOH H 96 799 165 HOH HOH . J 6 HOH H 97 800 166 HOH HOH . J 6 HOH H 98 801 167 HOH HOH . J 6 HOH H 99 802 171 HOH HOH . J 6 HOH H 100 803 172 HOH HOH . J 6 HOH H 101 804 178 HOH HOH . J 6 HOH H 102 805 179 HOH HOH . J 6 HOH H 103 806 180 HOH HOH . J 6 HOH H 104 807 181 HOH HOH . J 6 HOH H 105 808 182 HOH HOH . J 6 HOH H 106 809 183 HOH HOH . J 6 HOH H 107 810 184 HOH HOH . J 6 HOH H 108 811 186 HOH HOH . J 6 HOH H 109 812 187 HOH HOH . J 6 HOH H 110 813 191 HOH HOH . K 6 HOH P 1 7 7 HOH HOH . K 6 HOH P 2 9 9 HOH HOH . K 6 HOH P 3 15 15 HOH HOH . K 6 HOH P 4 36 36 HOH HOH . K 6 HOH P 5 90 90 HOH HOH . K 6 HOH P 6 100 100 HOH HOH . K 6 HOH P 7 149 149 HOH HOH . K 6 HOH P 8 155 155 HOH HOH . K 6 HOH P 9 161 161 HOH HOH . K 6 HOH P 10 185 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 33.895 60.227 155.576 1 40.29 ? C1 EDO 702 L 1 HETATM 2 O O1 EDO . . . D 4 34.515 60.528 154.31 1 44.65 ? O1 EDO 702 L 1 HETATM 3 C C2 EDO . . . D 4 32.382 60.162 155.432 1 40.16 ? C2 EDO 702 L 1 HETATM 4 O O2 EDO . . . D 4 31.745 60.334 156.714 1 39.67 ? O2 EDO 702 L 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #