data_2B0Z # _model_server_result.job_id 6RQrCSY2zDOlYANOLTguFg _model_server_result.datetime_utc '2024-11-25 03:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":109}' # _entry.id 2B0Z # _exptl.entry_id 2B0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B0Z _cell.length_a 43.802 _cell.length_b 51.989 _cell.length_c 183.669 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 19 B CYS 14 1_555 D CAB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale2 B SG CYS 19 B CYS 14 1_555 D CBB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? covale ? covale3 B SG CYS 22 B CYS 17 1_555 D CAC HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B0Z _atom_sites.fract_transf_matrix[1][1] 0.02283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZNH A 1 295 295 ZNH ZNH . D 4 HEC B 1 109 109 HEC HEM . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 508 508 HOH HOH . E 5 HOH A 8 509 509 HOH HOH . E 5 HOH A 9 510 510 HOH HOH . E 5 HOH A 10 511 511 HOH HOH . E 5 HOH A 11 512 512 HOH HOH . E 5 HOH A 12 513 513 HOH HOH . E 5 HOH A 13 514 514 HOH HOH . E 5 HOH A 14 515 515 HOH HOH . E 5 HOH A 15 516 516 HOH HOH . E 5 HOH A 16 520 520 HOH HOH . E 5 HOH A 17 521 521 HOH HOH . E 5 HOH A 18 522 522 HOH HOH . E 5 HOH A 19 523 523 HOH HOH . E 5 HOH A 20 524 524 HOH HOH . E 5 HOH A 21 526 526 HOH HOH . E 5 HOH A 22 527 527 HOH HOH . E 5 HOH A 23 529 529 HOH HOH . E 5 HOH A 24 531 531 HOH HOH . E 5 HOH A 25 532 532 HOH HOH . E 5 HOH A 26 533 533 HOH HOH . E 5 HOH A 27 535 535 HOH HOH . E 5 HOH A 28 537 537 HOH HOH . E 5 HOH A 29 538 538 HOH HOH . E 5 HOH A 30 539 539 HOH HOH . E 5 HOH A 31 540 540 HOH HOH . E 5 HOH A 32 541 541 HOH HOH . E 5 HOH A 33 542 542 HOH HOH . E 5 HOH A 34 543 543 HOH HOH . E 5 HOH A 35 549 549 HOH HOH . E 5 HOH A 36 550 550 HOH HOH . E 5 HOH A 37 551 551 HOH HOH . E 5 HOH A 38 553 553 HOH HOH . E 5 HOH A 39 555 555 HOH HOH . E 5 HOH A 40 556 556 HOH HOH . E 5 HOH A 41 557 557 HOH HOH . E 5 HOH A 42 558 558 HOH HOH . E 5 HOH A 43 559 559 HOH HOH . E 5 HOH A 44 561 561 HOH HOH . E 5 HOH A 45 562 562 HOH HOH . E 5 HOH A 46 563 563 HOH HOH . E 5 HOH A 47 564 564 HOH HOH . E 5 HOH A 48 565 565 HOH HOH . E 5 HOH A 49 566 566 HOH HOH . E 5 HOH A 50 567 567 HOH HOH . E 5 HOH A 51 568 568 HOH HOH . E 5 HOH A 52 571 571 HOH HOH . E 5 HOH A 53 574 574 HOH HOH . E 5 HOH A 54 575 575 HOH HOH . E 5 HOH A 55 576 576 HOH HOH . E 5 HOH A 56 577 577 HOH HOH . E 5 HOH A 57 578 578 HOH HOH . E 5 HOH A 58 579 579 HOH HOH . E 5 HOH A 59 580 580 HOH HOH . E 5 HOH A 60 581 581 HOH HOH . E 5 HOH A 61 582 582 HOH HOH . E 5 HOH A 62 583 583 HOH HOH . E 5 HOH A 63 584 584 HOH HOH . E 5 HOH A 64 585 585 HOH HOH . E 5 HOH A 65 586 586 HOH HOH . E 5 HOH A 66 587 587 HOH HOH . E 5 HOH A 67 588 588 HOH HOH . E 5 HOH A 68 589 589 HOH HOH . E 5 HOH A 69 590 590 HOH HOH . E 5 HOH A 70 591 591 HOH HOH . E 5 HOH A 71 592 592 HOH HOH . E 5 HOH A 72 603 603 HOH HOH . E 5 HOH A 73 605 605 HOH HOH . E 5 HOH A 74 606 606 HOH HOH . E 5 HOH A 75 607 607 HOH HOH . F 5 HOH B 1 507 507 HOH HOH . F 5 HOH B 2 517 517 HOH HOH . F 5 HOH B 3 518 518 HOH HOH . F 5 HOH B 4 519 519 HOH HOH . F 5 HOH B 5 525 525 HOH HOH . F 5 HOH B 6 528 528 HOH HOH . F 5 HOH B 7 530 530 HOH HOH . F 5 HOH B 8 534 534 HOH HOH . F 5 HOH B 9 536 536 HOH HOH . F 5 HOH B 10 544 544 HOH HOH . F 5 HOH B 11 545 545 HOH HOH . F 5 HOH B 12 546 546 HOH HOH . F 5 HOH B 13 547 547 HOH HOH . F 5 HOH B 14 548 548 HOH HOH . F 5 HOH B 15 552 552 HOH HOH . F 5 HOH B 16 554 554 HOH HOH . F 5 HOH B 17 560 560 HOH HOH . F 5 HOH B 18 569 569 HOH HOH . F 5 HOH B 19 570 570 HOH HOH . F 5 HOH B 20 572 572 HOH HOH . F 5 HOH B 21 573 573 HOH HOH . F 5 HOH B 22 593 593 HOH HOH . F 5 HOH B 23 594 594 HOH HOH . F 5 HOH B 24 595 595 HOH HOH . F 5 HOH B 25 596 596 HOH HOH . F 5 HOH B 26 597 597 HOH HOH . F 5 HOH B 27 598 598 HOH HOH . F 5 HOH B 28 599 599 HOH HOH . F 5 HOH B 29 600 600 HOH HOH . F 5 HOH B 30 601 601 HOH HOH . F 5 HOH B 31 602 602 HOH HOH . F 5 HOH B 32 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 4 11.912 -3.467 56.614 1 21.57 ? FE HEC 109 B 1 HETATM 2 C CHA HEC . . . D 4 9.181 -1.993 55.382 1 20.76 ? CHA HEC 109 B 1 HETATM 3 C CHB HEC . . . D 4 13.551 -2.944 53.769 1 19.43 ? CHB HEC 109 B 1 HETATM 4 C CHC HEC . . . D 4 14.623 -4.91 57.921 1 22.25 ? CHC HEC 109 B 1 HETATM 5 C CHD HEC . . . D 4 10.107 -4.429 59.303 1 23.7 ? CHD HEC 109 B 1 HETATM 6 N NA HEC . . . D 4 11.422 -2.642 54.889 1 19.72 ? NA HEC 109 B 1 HETATM 7 C C1A HEC . . . D 4 10.254 -2.037 54.561 1 19.37 ? C1A HEC 109 B 1 HETATM 8 C C2A HEC . . . D 4 10.292 -1.533 53.246 1 17.55 ? C2A HEC 109 B 1 HETATM 9 C C3A HEC . . . D 4 11.528 -1.844 52.794 1 17.82 ? C3A HEC 109 B 1 HETATM 10 C C4A HEC . . . D 4 12.232 -2.527 53.81 1 18 ? C4A HEC 109 B 1 HETATM 11 C CMA HEC . . . D 4 12.13 -1.483 51.483 1 17.09 ? CMA HEC 109 B 1 HETATM 12 C CAA HEC . . . D 4 9.235 -0.729 52.525 1 12.88 ? CAA HEC 109 B 1 HETATM 13 C CBA HEC . . . D 4 8.189 -1.567 51.82 1 11.45 ? CBA HEC 109 B 1 HETATM 14 C CGA HEC . . . D 4 7.291 -0.765 50.89 1 22.01 ? CGA HEC 109 B 1 HETATM 15 O O1A HEC . . . D 4 6.419 -1.389 50.246 1 23.38 ? O1A HEC 109 B 1 HETATM 16 O O2A HEC . . . D 4 7.458 0.474 50.777 1 28.49 ? O2A HEC 109 B 1 HETATM 17 N NB HEC . . . D 4 13.832 -3.726 55.997 1 26.18 ? NB HEC 109 B 1 HETATM 18 C C1B HEC . . . D 4 14.31 -3.515 54.766 1 23.1 ? C1B HEC 109 B 1 HETATM 19 C C2B HEC . . . D 4 15.676 -4.019 54.638 1 25.07 ? C2B HEC 109 B 1 HETATM 20 C C3B HEC . . . D 4 16.041 -4.5 55.863 1 27.46 ? C3B HEC 109 B 1 HETATM 21 C C4B HEC . . . D 4 14.837 -4.348 56.676 1 25.6 ? C4B HEC 109 B 1 HETATM 22 C CMB HEC . . . D 4 16.422 -4.218 53.305 1 22.91 ? CMB HEC 109 B 1 HETATM 23 C CAB HEC . . . D 4 17.28 -5.055 56.27 1 30.41 ? CAB HEC 109 B 1 HETATM 24 C CBB HEC . . . D 4 18.541 -4.49 56.473 1 33.44 ? CBB HEC 109 B 1 HETATM 25 N NC HEC . . . D 4 12.319 -4.4 58.376 1 24.32 ? NC HEC 109 B 1 HETATM 26 C C1C HEC . . . D 4 13.483 -4.966 58.704 1 24.56 ? C1C HEC 109 B 1 HETATM 27 C C2C HEC . . . D 4 13.37 -5.74 59.917 1 27.36 ? C2C HEC 109 B 1 HETATM 28 C C3C HEC . . . D 4 12.05 -5.626 60.394 1 23.31 ? C3C HEC 109 B 1 HETATM 29 C C4C HEC . . . D 4 11.428 -4.77 59.354 1 26.46 ? C4C HEC 109 B 1 HETATM 30 C CMC HEC . . . D 4 14.485 -6.699 60.368 1 32.22 ? CMC HEC 109 B 1 HETATM 31 C CAC HEC . . . D 4 11.433 -6.23 61.519 1 22.62 ? CAC HEC 109 B 1 HETATM 32 C CBC HEC . . . D 4 11.734 -6.111 62.855 1 22.24 ? CBC HEC 109 B 1 HETATM 33 N ND HEC . . . D 4 9.985 -3.276 57.217 1 21.42 ? ND HEC 109 B 1 HETATM 34 C C1D HEC . . . D 4 9.433 -3.74 58.363 1 15.9 ? C1D HEC 109 B 1 HETATM 35 C C2D HEC . . . D 4 8.087 -3.311 58.534 1 18.93 ? C2D HEC 109 B 1 HETATM 36 C C3D HEC . . . D 4 7.812 -2.537 57.419 1 19.7 ? C3D HEC 109 B 1 HETATM 37 C C4D HEC . . . D 4 9.018 -2.547 56.62 1 24.7 ? C4D HEC 109 B 1 HETATM 38 C CMD HEC . . . D 4 7.208 -3.64 59.76 1 18.43 ? CMD HEC 109 B 1 HETATM 39 C CAD HEC . . . D 4 6.531 -1.75 57.142 1 18.99 ? CAD HEC 109 B 1 HETATM 40 C CBD HEC . . . D 4 6.686 -0.405 57.868 1 23.43 ? CBD HEC 109 B 1 HETATM 41 C CGD HEC . . . D 4 5.435 0.456 57.87 1 15.79 ? CGD HEC 109 B 1 HETATM 42 O O1D HEC . . . D 4 4.359 0.044 57.373 1 14.53 ? O1D HEC 109 B 1 HETATM 43 O O2D HEC . . . D 4 5.526 1.578 58.398 1 24.89 ? O2D HEC 109 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #