data_2B0Z # _model_server_result.job_id q2QNc_oHNKos_XLrog0OVQ _model_server_result.datetime_utc '2024-11-28 20:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":295}' # _entry.id 2B0Z # _exptl.entry_id 2B0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.051 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING ZN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B0Z _cell.length_a 43.802 _cell.length_b 51.989 _cell.length_c 183.669 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 19 B CYS 14 1_555 D CAB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale2 B SG CYS 19 B CYS 14 1_555 D CBB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? covale ? covale3 B SG CYS 22 B CYS 17 1_555 D CAC HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C34 H32 N4 O4 Zn' _chem_comp.formula_weight 626.051 _chem_comp.id ZNH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B0Z _atom_sites.fract_transf_matrix[1][1] 0.02283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZNH A 1 295 295 ZNH ZNH . D 4 HEC B 1 109 109 HEC HEM . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 508 508 HOH HOH . E 5 HOH A 8 509 509 HOH HOH . E 5 HOH A 9 510 510 HOH HOH . E 5 HOH A 10 511 511 HOH HOH . E 5 HOH A 11 512 512 HOH HOH . E 5 HOH A 12 513 513 HOH HOH . E 5 HOH A 13 514 514 HOH HOH . E 5 HOH A 14 515 515 HOH HOH . E 5 HOH A 15 516 516 HOH HOH . E 5 HOH A 16 520 520 HOH HOH . E 5 HOH A 17 521 521 HOH HOH . E 5 HOH A 18 522 522 HOH HOH . E 5 HOH A 19 523 523 HOH HOH . E 5 HOH A 20 524 524 HOH HOH . E 5 HOH A 21 526 526 HOH HOH . E 5 HOH A 22 527 527 HOH HOH . E 5 HOH A 23 529 529 HOH HOH . E 5 HOH A 24 531 531 HOH HOH . E 5 HOH A 25 532 532 HOH HOH . E 5 HOH A 26 533 533 HOH HOH . E 5 HOH A 27 535 535 HOH HOH . E 5 HOH A 28 537 537 HOH HOH . E 5 HOH A 29 538 538 HOH HOH . E 5 HOH A 30 539 539 HOH HOH . E 5 HOH A 31 540 540 HOH HOH . E 5 HOH A 32 541 541 HOH HOH . E 5 HOH A 33 542 542 HOH HOH . E 5 HOH A 34 543 543 HOH HOH . E 5 HOH A 35 549 549 HOH HOH . E 5 HOH A 36 550 550 HOH HOH . E 5 HOH A 37 551 551 HOH HOH . E 5 HOH A 38 553 553 HOH HOH . E 5 HOH A 39 555 555 HOH HOH . E 5 HOH A 40 556 556 HOH HOH . E 5 HOH A 41 557 557 HOH HOH . E 5 HOH A 42 558 558 HOH HOH . E 5 HOH A 43 559 559 HOH HOH . E 5 HOH A 44 561 561 HOH HOH . E 5 HOH A 45 562 562 HOH HOH . E 5 HOH A 46 563 563 HOH HOH . E 5 HOH A 47 564 564 HOH HOH . E 5 HOH A 48 565 565 HOH HOH . E 5 HOH A 49 566 566 HOH HOH . E 5 HOH A 50 567 567 HOH HOH . E 5 HOH A 51 568 568 HOH HOH . E 5 HOH A 52 571 571 HOH HOH . E 5 HOH A 53 574 574 HOH HOH . E 5 HOH A 54 575 575 HOH HOH . E 5 HOH A 55 576 576 HOH HOH . E 5 HOH A 56 577 577 HOH HOH . E 5 HOH A 57 578 578 HOH HOH . E 5 HOH A 58 579 579 HOH HOH . E 5 HOH A 59 580 580 HOH HOH . E 5 HOH A 60 581 581 HOH HOH . E 5 HOH A 61 582 582 HOH HOH . E 5 HOH A 62 583 583 HOH HOH . E 5 HOH A 63 584 584 HOH HOH . E 5 HOH A 64 585 585 HOH HOH . E 5 HOH A 65 586 586 HOH HOH . E 5 HOH A 66 587 587 HOH HOH . E 5 HOH A 67 588 588 HOH HOH . E 5 HOH A 68 589 589 HOH HOH . E 5 HOH A 69 590 590 HOH HOH . E 5 HOH A 70 591 591 HOH HOH . E 5 HOH A 71 592 592 HOH HOH . E 5 HOH A 72 603 603 HOH HOH . E 5 HOH A 73 605 605 HOH HOH . E 5 HOH A 74 606 606 HOH HOH . E 5 HOH A 75 607 607 HOH HOH . F 5 HOH B 1 507 507 HOH HOH . F 5 HOH B 2 517 517 HOH HOH . F 5 HOH B 3 518 518 HOH HOH . F 5 HOH B 4 519 519 HOH HOH . F 5 HOH B 5 525 525 HOH HOH . F 5 HOH B 6 528 528 HOH HOH . F 5 HOH B 7 530 530 HOH HOH . F 5 HOH B 8 534 534 HOH HOH . F 5 HOH B 9 536 536 HOH HOH . F 5 HOH B 10 544 544 HOH HOH . F 5 HOH B 11 545 545 HOH HOH . F 5 HOH B 12 546 546 HOH HOH . F 5 HOH B 13 547 547 HOH HOH . F 5 HOH B 14 548 548 HOH HOH . F 5 HOH B 15 552 552 HOH HOH . F 5 HOH B 16 554 554 HOH HOH . F 5 HOH B 17 560 560 HOH HOH . F 5 HOH B 18 569 569 HOH HOH . F 5 HOH B 19 570 570 HOH HOH . F 5 HOH B 20 572 572 HOH HOH . F 5 HOH B 21 573 573 HOH HOH . F 5 HOH B 22 593 593 HOH HOH . F 5 HOH B 23 594 594 HOH HOH . F 5 HOH B 24 595 595 HOH HOH . F 5 HOH B 25 596 596 HOH HOH . F 5 HOH B 26 597 597 HOH HOH . F 5 HOH B 27 598 598 HOH HOH . F 5 HOH B 28 599 599 HOH HOH . F 5 HOH B 29 600 600 HOH HOH . F 5 HOH B 30 601 601 HOH HOH . F 5 HOH B 31 602 602 HOH HOH . F 5 HOH B 32 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZNH . . . C 3 8.9 16.851 78.183 1 15.1 ? ZN ZNH 295 A 1 HETATM 2 C CHA ZNH . . . C 3 11.589 18.258 76.696 1 19.84 ? CHA ZNH 295 A 1 HETATM 3 C CHB ZNH . . . C 3 10.755 16.429 81.003 1 22.67 ? CHB ZNH 295 A 1 HETATM 4 C CHC ZNH . . . C 3 6.176 16.017 79.934 1 17.66 ? CHC ZNH 295 A 1 HETATM 5 C CHD ZNH . . . C 3 6.97 18.104 75.745 1 20.67 ? CHD ZNH 295 A 1 HETATM 6 N NA ZNH . . . C 3 10.751 17.534 78.833 1 20.56 ? NA ZNH 295 A 1 HETATM 7 C C1A ZNH . . . C 3 11.769 17.93 78.029 1 21.81 ? C1A ZNH 295 A 1 HETATM 8 C C2A ZNH . . . C 3 13.027 17.809 78.704 1 13.47 ? C2A ZNH 295 A 1 HETATM 9 C C3A ZNH . . . C 3 12.793 17.283 79.928 1 17.34 ? C3A ZNH 295 A 1 HETATM 10 C C4A ZNH . . . C 3 11.386 17.117 79.983 1 24.81 ? C4A ZNH 295 A 1 HETATM 11 C CMA ZNH . . . C 3 13.824 16.871 81.002 1 16.76 ? CMA ZNH 295 A 1 HETATM 12 C CAA ZNH . . . C 3 14.384 18.2 78.138 1 18.8 ? CAA ZNH 295 A 1 HETATM 13 C CBA ZNH . . . C 3 14.786 19.658 78.185 1 10.92 ? CBA ZNH 295 A 1 HETATM 14 C CGA ZNH . . . C 3 16.115 19.908 77.521 1 14.55 ? CGA ZNH 295 A 1 HETATM 15 O O1A ZNH . . . C 3 17.065 19.17 77.834 1 18.18 ? O1A ZNH 295 A 1 HETATM 16 O O2A ZNH . . . C 3 16.213 20.835 76.692 1 25.39 ? O2A ZNH 295 A 1 HETATM 17 N NB ZNH . . . C 3 8.536 16.304 80.11 1 15.85 ? NB ZNH 295 A 1 HETATM 18 C C1B ZNH . . . C 3 9.448 16.032 81.075 1 20.06 ? C1B ZNH 295 A 1 HETATM 19 C C2B ZNH . . . C 3 8.866 15.313 82.175 1 25.99 ? C2B ZNH 295 A 1 HETATM 20 C C3B ZNH . . . C 3 7.494 15.157 81.893 1 29.18 ? C3B ZNH 295 A 1 HETATM 21 C C4B ZNH . . . C 3 7.35 15.813 80.591 1 22.85 ? C4B ZNH 295 A 1 HETATM 22 C CMB ZNH . . . C 3 9.675 14.873 83.403 1 26.29 ? CMB ZNH 295 A 1 HETATM 23 C CAB ZNH . . . C 3 6.417 14.613 82.638 1 28.55 ? CAB ZNH 295 A 1 HETATM 24 C CBB ZNH . . . C 3 6.338 13.6 83.584 1 34.87 ? CBB ZNH 295 A 1 HETATM 25 N NC ZNH . . . C 3 6.912 17.12 77.918 1 19.16 ? NC ZNH 295 A 1 HETATM 26 C C1C ZNH . . . C 3 5.935 16.643 78.735 1 27.73 ? C1C ZNH 295 A 1 HETATM 27 C C2C ZNH . . . C 3 4.636 16.905 78.22 1 27.03 ? C2C ZNH 295 A 1 HETATM 28 C C3C ZNH . . . C 3 4.84 17.575 77.015 1 31.18 ? C3C ZNH 295 A 1 HETATM 29 C C4C ZNH . . . C 3 6.28 17.639 76.847 1 22.7 ? C4C ZNH 295 A 1 HETATM 30 C CMC ZNH . . . C 3 3.377 16.54 79.014 1 16.31 ? CMC ZNH 295 A 1 HETATM 31 C CAC ZNH . . . C 3 3.979 18.298 76.166 1 23.22 ? CAC ZNH 295 A 1 HETATM 32 C CBC ZNH . . . C 3 2.685 18.102 75.828 1 19.13 ? CBC ZNH 295 A 1 HETATM 33 N ND ZNH . . . C 3 9.198 18.067 76.561 1 12.06 ? ND ZNH 295 A 1 HETATM 34 C C1D ZNH . . . C 3 8.318 18.255 75.556 1 20.39 ? C1D ZNH 295 A 1 HETATM 35 C C2D ZNH . . . C 3 8.967 18.558 74.305 1 18.82 ? C2D ZNH 295 A 1 HETATM 36 C C3D ZNH . . . C 3 10.327 18.596 74.529 1 19.42 ? C3D ZNH 295 A 1 HETATM 37 C C4D ZNH . . . C 3 10.422 18.299 75.966 1 21.71 ? C4D ZNH 295 A 1 HETATM 38 C CMD ZNH . . . C 3 8.267 18.665 72.953 1 2 ? CMD ZNH 295 A 1 HETATM 39 C CAD ZNH . . . C 3 11.492 18.732 73.507 1 20.98 ? CAD ZNH 295 A 1 HETATM 40 C CBD ZNH . . . C 3 12.122 20.119 73.423 1 20.26 ? CBD ZNH 295 A 1 HETATM 41 C CGD ZNH . . . C 3 13.284 20.223 72.436 1 24.63 ? CGD ZNH 295 A 1 HETATM 42 O O1D ZNH . . . C 3 13.539 21.346 71.954 1 34.03 ? O1D ZNH 295 A 1 HETATM 43 O O2D ZNH . . . C 3 13.936 19.204 72.145 1 23.26 ? O2D ZNH 295 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #