data_2B10 # _model_server_result.job_id nEyDti1CIt-GRfbU6B_ceg _model_server_result.datetime_utc '2024-11-14 05:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":295}' # _entry.id 2B10 # _exptl.entry_id 2B10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.051 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING ZN' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.55 _cell.angle_gamma 90 _cell.entry_id 2B10 _cell.length_a 44.575 _cell.length_b 113.448 _cell.length_c 88.002 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 F FE HEM . B HEM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 F FE HEM . B HEM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G ZN ZNH . C ZNH 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 D NE2 HIS 23 D HIS 18 1_555 H FE HEM . D HEM 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc6 D SD MET 85 D MET 80 1_555 H FE HEM . D HEM 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C34 H32 N4 O4 Zn' _chem_comp.formula_weight 626.051 _chem_comp.id ZNH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag ZN NA ZNH sing 458 n n ZN NB ZNH sing 459 n n ZN NC ZNH sing 460 n n ZN ND ZNH sing 461 n n CHA C1A ZNH doub 462 n n CHA C4D ZNH sing 463 n n CHA HHA ZNH sing 464 n n CHB C4A ZNH doub 465 n n CHB C1B ZNH sing 466 n n CHB HHB ZNH sing 467 n n CHC C4B ZNH doub 468 n n CHC C1C ZNH sing 469 n n CHC HHC ZNH sing 470 n n CHD C4C ZNH sing 471 n n CHD C1D ZNH doub 472 n n CHD HHD ZNH sing 473 n n NA C1A ZNH sing 474 n n NA C4A ZNH sing 475 n n C1A C2A ZNH sing 476 n n C2A C3A ZNH doub 477 n n C2A CAA ZNH sing 478 n n C3A C4A ZNH sing 479 n n C3A CMA ZNH sing 480 n n CMA HMA1 ZNH sing 481 n n CMA HMA2 ZNH sing 482 n n CMA HMA3 ZNH sing 483 n n CAA CBA ZNH sing 484 n n CAA HAA1 ZNH sing 485 n n CAA HAA2 ZNH sing 486 n n CBA CGA ZNH sing 487 n n CBA HBA1 ZNH sing 488 n n CBA HBA2 ZNH sing 489 n n CGA O1A ZNH doub 490 n n CGA O2A ZNH sing 491 n n O2A H2A ZNH sing 492 n n NB C1B ZNH doub 493 n n NB C4B ZNH sing 494 n n C1B C2B ZNH sing 495 n n C2B C3B ZNH doub 496 n n C2B CMB ZNH sing 497 n n C3B C4B ZNH sing 498 n n C3B CAB ZNH sing 499 n n CMB HMB1 ZNH sing 500 n n CMB HMB2 ZNH sing 501 n n CMB HMB3 ZNH sing 502 n n CAB CBB ZNH doub 503 n n CAB HAB ZNH sing 504 n n CBB HBB1 ZNH sing 505 n n CBB HBB2 ZNH sing 506 n n NC C1C ZNH sing 507 n y NC C4C ZNH sing 508 n y C1C C2C ZNH doub 509 n y C2C C3C ZNH sing 510 n y C2C CMC ZNH sing 511 n n C3C C4C ZNH doub 512 n y C3C CAC ZNH sing 513 n n CMC HMC1 ZNH sing 514 n n CMC HMC2 ZNH sing 515 n n CMC HMC3 ZNH sing 516 n n CAC CBC ZNH doub 517 n n CAC HAC ZNH sing 518 n n CBC HBC1 ZNH sing 519 n n CBC HBC2 ZNH sing 520 n n ND C1D ZNH sing 521 n n ND C4D ZNH doub 522 n n C1D C2D ZNH sing 523 n n C2D C3D ZNH doub 524 n n C2D CMD ZNH sing 525 n n C3D C4D ZNH sing 526 n n C3D CAD ZNH sing 527 n n CMD HMD1 ZNH sing 528 n n CMD HMD2 ZNH sing 529 n n CMD HMD3 ZNH sing 530 n n CAD CBD ZNH sing 531 n n CAD HAD1 ZNH sing 532 n n CAD HAD2 ZNH sing 533 n n CBD CGD ZNH sing 534 n n CBD HBD1 ZNH sing 535 n n CBD HBD2 ZNH sing 536 n n CGD O1D ZNH doub 537 n n CGD O2D ZNH sing 538 n n O2D H2D ZNH sing 539 n n # _atom_sites.entry_id 2B10 _atom_sites.fract_transf_matrix[1][1] 0.022434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZNH A 1 295 295 ZNH ZNH . F 4 HEM B 1 409 409 HEM HEM . G 3 ZNH C 1 795 795 ZNH ZNH . H 4 HEM D 1 909 909 HEM HEM . I 5 HOH A 1 1001 1001 HOH HOH . I 5 HOH A 2 1002 1002 HOH HOH . I 5 HOH A 3 1003 1003 HOH HOH . I 5 HOH A 4 1004 1004 HOH HOH . I 5 HOH A 5 1005 1005 HOH HOH . I 5 HOH A 6 1006 1006 HOH HOH . I 5 HOH A 7 1007 1007 HOH HOH . I 5 HOH A 8 1008 1008 HOH HOH . I 5 HOH A 9 1009 1009 HOH HOH . I 5 HOH A 10 1010 1010 HOH HOH . I 5 HOH A 11 1011 1011 HOH HOH . I 5 HOH A 12 1012 1012 HOH HOH . I 5 HOH A 13 1013 1013 HOH HOH . I 5 HOH A 14 1014 1014 HOH HOH . J 5 HOH C 1 1016 1016 HOH HOH . J 5 HOH C 2 1017 1017 HOH HOH . J 5 HOH C 3 1018 1018 HOH HOH . J 5 HOH C 4 1019 1019 HOH HOH . K 5 HOH D 1 1015 1015 HOH HOH . K 5 HOH D 2 1020 1020 HOH HOH . K 5 HOH D 3 1021 1021 HOH HOH . K 5 HOH D 4 1022 1022 HOH HOH . K 5 HOH D 5 1023 1023 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZNH . . . E 3 2.362 3.333 28.553 1 13.19 ? ZN ZNH 295 A 1 HETATM 2 C CHA ZNH . . . E 3 -0.314 3.79 30.508 1 15.56 ? CHA ZNH 295 A 1 HETATM 3 C CHB ZNH . . . E 3 0.435 4.073 25.864 1 13.97 ? CHB ZNH 295 A 1 HETATM 4 C CHC ZNH . . . E 3 5.152 3.609 26.593 1 14.41 ? CHC ZNH 295 A 1 HETATM 5 C CHD ZNH . . . E 3 4.374 3.189 31.256 1 8.07 ? CHD ZNH 295 A 1 HETATM 6 N NA ZNH . . . E 3 0.366 3.686 28.237 1 18.85 ? NA ZNH 295 A 1 HETATM 7 C C1A ZNH . . . E 3 -0.58 3.888 29.172 1 19.92 ? C1A ZNH 295 A 1 HETATM 8 C C2A ZNH . . . E 3 -1.782 4.313 28.573 1 14.97 ? C2A ZNH 295 A 1 HETATM 9 C C3A ZNH . . . E 3 -1.583 4.396 27.213 1 19.39 ? C3A ZNH 295 A 1 HETATM 10 C C4A ZNH . . . E 3 -0.243 4.011 27.054 1 14.74 ? C4A ZNH 295 A 1 HETATM 11 C CMA ZNH . . . E 3 -2.516 4.767 26.017 1 23.86 ? CMA ZNH 295 A 1 HETATM 12 C CAA ZNH . . . E 3 -3.034 4.597 29.355 1 11.66 ? CAA ZNH 295 A 1 HETATM 13 C CBA ZNH . . . E 3 -3.39 5.931 29.979 1 12.75 ? CBA ZNH 295 A 1 HETATM 14 C CGA ZNH . . . E 3 -4.618 5.848 30.839 1 7.72 ? CGA ZNH 295 A 1 HETATM 15 O O1A ZNH . . . E 3 -5.702 5.532 30.306 1 11.17 ? O1A ZNH 295 A 1 HETATM 16 O O2A ZNH . . . E 3 -4.5 6.108 32.048 1 17.14 ? O2A ZNH 295 A 1 HETATM 17 N NB ZNH . . . E 3 2.689 3.566 26.57 1 15.43 ? NB ZNH 295 A 1 HETATM 18 C C1B ZNH . . . E 3 1.791 3.86 25.616 1 8.76 ? C1B ZNH 295 A 1 HETATM 19 C C2B ZNH . . . E 3 2.436 4.037 24.303 1 10.63 ? C2B ZNH 295 A 1 HETATM 20 C C3B ZNH . . . E 3 3.802 3.818 24.459 1 9.24 ? C3B ZNH 295 A 1 HETATM 21 C C4B ZNH . . . E 3 3.912 3.589 25.916 1 7.25 ? C4B ZNH 295 A 1 HETATM 22 C CMB ZNH . . . E 3 1.659 4.515 23.055 1 4.81 ? CMB ZNH 295 A 1 HETATM 23 C CAB ZNH . . . E 3 4.853 3.695 23.532 1 8.9 ? CAB ZNH 295 A 1 HETATM 24 C CBB ZNH . . . E 3 4.888 3.33 22.19 1 3.44 ? CBB ZNH 295 A 1 HETATM 25 N NC ZNH . . . E 3 4.417 3.534 28.851 1 16.75 ? NC ZNH 295 A 1 HETATM 26 C C1C ZNH . . . E 3 5.386 3.585 27.943 1 15.3 ? C1C ZNH 295 A 1 HETATM 27 C C2C ZNH . . . E 3 6.7 3.47 28.5 1 16.16 ? C2C ZNH 295 A 1 HETATM 28 C C3C ZNH . . . E 3 6.518 3.334 29.831 1 19.32 ? C3C ZNH 295 A 1 HETATM 29 C C4C ZNH . . . E 3 5.054 3.35 30.018 1 18.15 ? C4C ZNH 295 A 1 HETATM 30 C CMC ZNH . . . E 3 7.995 3.5 27.705 1 16.97 ? CMC ZNH 295 A 1 HETATM 31 C CAC ZNH . . . E 3 7.397 3.36 30.934 1 16.56 ? CAC ZNH 295 A 1 HETATM 32 C CBC ZNH . . . E 3 8.731 3.094 31.088 1 15.21 ? CBC ZNH 295 A 1 HETATM 33 N ND ZNH . . . E 3 2.073 3.577 30.481 1 12.53 ? ND ZNH 295 A 1 HETATM 34 C C1D ZNH . . . E 3 2.987 3.266 31.468 1 11.14 ? C1D ZNH 295 A 1 HETATM 35 C C2D ZNH . . . E 3 2.315 3.011 32.794 1 6.94 ? C2D ZNH 295 A 1 HETATM 36 C C3D ZNH . . . E 3 0.994 3.223 32.596 1 13.86 ? C3D ZNH 295 A 1 HETATM 37 C C4D ZNH . . . E 3 0.887 3.584 31.125 1 12.93 ? C4D ZNH 295 A 1 HETATM 38 C CMD ZNH . . . E 3 2.921 2.487 34.084 1 24.7 ? CMD ZNH 295 A 1 HETATM 39 C CAD ZNH . . . E 3 -0.088 3.011 33.646 1 4.91 ? CAD ZNH 295 A 1 HETATM 40 C CBD ZNH . . . E 3 -0.679 4.308 34.143 1 2 ? CBD ZNH 295 A 1 HETATM 41 C CGD ZNH . . . E 3 -1.795 4.152 35.134 1 2.01 ? CGD ZNH 295 A 1 HETATM 42 O O1D ZNH . . . E 3 -2.448 5.17 35.431 1 8.3 ? O1D ZNH 295 A 1 HETATM 43 O O2D ZNH . . . E 3 -2.021 3.038 35.633 1 9.16 ? O2D ZNH 295 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #