data_2B10 # _model_server_result.job_id 2eEMsgnYnrglVIjGUpHLag _model_server_result.datetime_utc '2024-11-14 05:50:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":409}' # _entry.id 2B10 # _exptl.entry_id 2B10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.55 _cell.angle_gamma 90 _cell.entry_id 2B10 _cell.length_a 44.575 _cell.length_b 113.448 _cell.length_c 88.002 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 F FE HEM . B HEM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 F FE HEM . B HEM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G ZN ZNH . C ZNH 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 D NE2 HIS 23 D HIS 18 1_555 H FE HEM . D HEM 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc6 D SD MET 85 D MET 80 1_555 H FE HEM . D HEM 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2B10 _atom_sites.fract_transf_matrix[1][1] 0.022434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZNH A 1 295 295 ZNH ZNH . F 4 HEM B 1 409 409 HEM HEM . G 3 ZNH C 1 795 795 ZNH ZNH . H 4 HEM D 1 909 909 HEM HEM . I 5 HOH A 1 1001 1001 HOH HOH . I 5 HOH A 2 1002 1002 HOH HOH . I 5 HOH A 3 1003 1003 HOH HOH . I 5 HOH A 4 1004 1004 HOH HOH . I 5 HOH A 5 1005 1005 HOH HOH . I 5 HOH A 6 1006 1006 HOH HOH . I 5 HOH A 7 1007 1007 HOH HOH . I 5 HOH A 8 1008 1008 HOH HOH . I 5 HOH A 9 1009 1009 HOH HOH . I 5 HOH A 10 1010 1010 HOH HOH . I 5 HOH A 11 1011 1011 HOH HOH . I 5 HOH A 12 1012 1012 HOH HOH . I 5 HOH A 13 1013 1013 HOH HOH . I 5 HOH A 14 1014 1014 HOH HOH . J 5 HOH C 1 1016 1016 HOH HOH . J 5 HOH C 2 1017 1017 HOH HOH . J 5 HOH C 3 1018 1018 HOH HOH . J 5 HOH C 4 1019 1019 HOH HOH . K 5 HOH D 1 1015 1015 HOH HOH . K 5 HOH D 2 1020 1020 HOH HOH . K 5 HOH D 3 1021 1021 HOH HOH . K 5 HOH D 4 1022 1022 HOH HOH . K 5 HOH D 5 1023 1023 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 4 -2.819 -17.223 46.699 1 2 ? CHA HEM 409 B 1 HETATM 2 C CHB HEM . . . F 4 -4.875 -14.347 49.937 1 2 ? CHB HEM 409 B 1 HETATM 3 C CHC HEM . . . F 4 -4.607 -10.631 46.685 1 2 ? CHC HEM 409 B 1 HETATM 4 C CHD HEM . . . F 4 -3.321 -13.762 43.447 1 2 ? CHD HEM 409 B 1 HETATM 5 C C1A HEM . . . F 4 -3.356 -16.793 47.91 1 2 ? C1A HEM 409 B 1 HETATM 6 C C2A HEM . . . F 4 -3.426 -17.563 49.122 1 2 ? C2A HEM 409 B 1 HETATM 7 C C3A HEM . . . F 4 -4.069 -16.735 49.981 1 2 ? C3A HEM 409 B 1 HETATM 8 C C4A HEM . . . F 4 -4.348 -15.492 49.353 1 2 ? C4A HEM 409 B 1 HETATM 9 C CMA HEM . . . F 4 -4.437 -17.069 51.388 1 2 ? CMA HEM 409 B 1 HETATM 10 C CAA HEM . . . F 4 -2.768 -18.915 49.412 1 2.55 ? CAA HEM 409 B 1 HETATM 11 C CBA HEM . . . F 4 -3.601 -20.089 48.912 1 8.05 ? CBA HEM 409 B 1 HETATM 12 C CGA HEM . . . F 4 -3.018 -21.446 49.264 1 9.38 ? CGA HEM 409 B 1 HETATM 13 O O1A HEM . . . F 4 -3.801 -22.419 49.324 1 10.3 ? O1A HEM 409 B 1 HETATM 14 O O2A HEM . . . F 4 -1.789 -21.553 49.467 1 10.4 ? O2A HEM 409 B 1 HETATM 15 C C1B HEM . . . F 4 -4.96 -13.027 49.389 1 2 ? C1B HEM 409 B 1 HETATM 16 C C2B HEM . . . F 4 -5.784 -11.971 49.914 1 2 ? C2B HEM 409 B 1 HETATM 17 C C3B HEM . . . F 4 -5.582 -10.88 49.052 1 2 ? C3B HEM 409 B 1 HETATM 18 C C4B HEM . . . F 4 -4.754 -11.327 47.953 1 2 ? C4B HEM 409 B 1 HETATM 19 C CMB HEM . . . F 4 -6.92 -12.365 50.897 1 2 ? CMB HEM 409 B 1 HETATM 20 C CAB HEM . . . F 4 -6.135 -9.615 49.181 1 2 ? CAB HEM 409 B 1 HETATM 21 C CBB HEM . . . F 4 -5.556 -8.359 49.399 1 3.52 ? CBB HEM 409 B 1 HETATM 22 C C1C HEM . . . F 4 -4.258 -11.093 45.413 1 2 ? C1C HEM 409 B 1 HETATM 23 C C2C HEM . . . F 4 -3.983 -10.353 44.117 1 2 ? C2C HEM 409 B 1 HETATM 24 C C3C HEM . . . F 4 -3.774 -11.337 43.153 1 2 ? C3C HEM 409 B 1 HETATM 25 C C4C HEM . . . F 4 -3.809 -12.588 43.925 1 2 ? C4C HEM 409 B 1 HETATM 26 C CMC HEM . . . F 4 -3.665 -8.859 43.9 1 2 ? CMC HEM 409 B 1 HETATM 27 C CAC HEM . . . F 4 -3.713 -11.197 41.74 1 2 ? CAC HEM 409 B 1 HETATM 28 C CBC HEM . . . F 4 -2.585 -11.257 40.915 1 2 ? CBC HEM 409 B 1 HETATM 29 C C1D HEM . . . F 4 -3.086 -14.975 44.033 1 2 ? C1D HEM 409 B 1 HETATM 30 C C2D HEM . . . F 4 -2.164 -15.891 43.409 1 2 ? C2D HEM 409 B 1 HETATM 31 C C3D HEM . . . F 4 -2.002 -16.905 44.316 1 2 ? C3D HEM 409 B 1 HETATM 32 C C4D HEM . . . F 4 -2.802 -16.549 45.483 1 2 ? C4D HEM 409 B 1 HETATM 33 C CMD HEM . . . F 4 -1.392 -15.64 42.078 1 2 ? CMD HEM 409 B 1 HETATM 34 C CAD HEM . . . F 4 -1.171 -18.165 44.071 1 2 ? CAD HEM 409 B 1 HETATM 35 C CBD HEM . . . F 4 0.248 -18.146 44.573 1 2 ? CBD HEM 409 B 1 HETATM 36 C CGD HEM . . . F 4 1.059 -19.362 44.182 1 2 ? CGD HEM 409 B 1 HETATM 37 O O1D HEM . . . F 4 0.522 -20.296 43.545 1 2 ? O1D HEM 409 B 1 HETATM 38 O O2D HEM . . . F 4 2.262 -19.374 44.518 1 2.44 ? O2D HEM 409 B 1 HETATM 39 N NA HEM . . . F 4 -3.914 -15.533 48.068 1 2 ? NA HEM 409 B 1 HETATM 40 N NB HEM . . . F 4 -4.399 -12.634 48.195 1 2 ? NB HEM 409 B 1 HETATM 41 N NC HEM . . . F 4 -4.121 -12.442 45.237 1 2 ? NC HEM 409 B 1 HETATM 42 N ND HEM . . . F 4 -3.441 -15.349 45.281 1 2 ? ND HEM 409 B 1 HETATM 43 FE FE HEM . . . F 4 -3.907 -13.936 46.707 1 2 ? FE HEM 409 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #