data_2B10
#
_model_server_result.job_id            a-f7LEfnK8LWEa1guEFUoQ 
_model_server_result.datetime_utc      '2024-11-14 05:52:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b10 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":795}' 
#
_entry.id    2B10 
#
_exptl.entry_id    2B10 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              626.051 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING ZN' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.55 
_cell.angle_gamma         90 
_cell.entry_id            2B10 
_cell.length_a            44.575 
_cell.length_b            113.448 
_cell.length_c            88.002 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B10 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I 1 1 
C,D,G,H,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 F FE HEM . B HEM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc3 B SD MET 85 B MET 80 1_555 F FE HEM . B HEM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G ZN ZNH . C ZNH 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc5 D NE2 HIS 23 D HIS 18 1_555 H FE HEM . D HEM 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 D SD MET 85 D MET 80 1_555 H FE HEM . D HEM 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
#
_chem_comp.formula           'C34 H32 N4 O4 Zn' 
_chem_comp.formula_weight    626.051 
_chem_comp.id                ZNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING ZN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
ZN NA ZNH sing 458 n n 
ZN NB ZNH sing 459 n n 
ZN NC ZNH sing 460 n n 
ZN ND ZNH sing 461 n n 
CHA C1A ZNH doub 462 n n 
CHA C4D ZNH sing 463 n n 
CHA HHA ZNH sing 464 n n 
CHB C4A ZNH doub 465 n n 
CHB C1B ZNH sing 466 n n 
CHB HHB ZNH sing 467 n n 
CHC C4B ZNH doub 468 n n 
CHC C1C ZNH sing 469 n n 
CHC HHC ZNH sing 470 n n 
CHD C4C ZNH sing 471 n n 
CHD C1D ZNH doub 472 n n 
CHD HHD ZNH sing 473 n n 
NA C1A ZNH sing 474 n n 
NA C4A ZNH sing 475 n n 
C1A C2A ZNH sing 476 n n 
C2A C3A ZNH doub 477 n n 
C2A CAA ZNH sing 478 n n 
C3A C4A ZNH sing 479 n n 
C3A CMA ZNH sing 480 n n 
CMA HMA1 ZNH sing 481 n n 
CMA HMA2 ZNH sing 482 n n 
CMA HMA3 ZNH sing 483 n n 
CAA CBA ZNH sing 484 n n 
CAA HAA1 ZNH sing 485 n n 
CAA HAA2 ZNH sing 486 n n 
CBA CGA ZNH sing 487 n n 
CBA HBA1 ZNH sing 488 n n 
CBA HBA2 ZNH sing 489 n n 
CGA O1A ZNH doub 490 n n 
CGA O2A ZNH sing 491 n n 
O2A H2A ZNH sing 492 n n 
NB C1B ZNH doub 493 n n 
NB C4B ZNH sing 494 n n 
C1B C2B ZNH sing 495 n n 
C2B C3B ZNH doub 496 n n 
C2B CMB ZNH sing 497 n n 
C3B C4B ZNH sing 498 n n 
C3B CAB ZNH sing 499 n n 
CMB HMB1 ZNH sing 500 n n 
CMB HMB2 ZNH sing 501 n n 
CMB HMB3 ZNH sing 502 n n 
CAB CBB ZNH doub 503 n n 
CAB HAB ZNH sing 504 n n 
CBB HBB1 ZNH sing 505 n n 
CBB HBB2 ZNH sing 506 n n 
NC C1C ZNH sing 507 n y 
NC C4C ZNH sing 508 n y 
C1C C2C ZNH doub 509 n y 
C2C C3C ZNH sing 510 n y 
C2C CMC ZNH sing 511 n n 
C3C C4C ZNH doub 512 n y 
C3C CAC ZNH sing 513 n n 
CMC HMC1 ZNH sing 514 n n 
CMC HMC2 ZNH sing 515 n n 
CMC HMC3 ZNH sing 516 n n 
CAC CBC ZNH doub 517 n n 
CAC HAC ZNH sing 518 n n 
CBC HBC1 ZNH sing 519 n n 
CBC HBC2 ZNH sing 520 n n 
ND C1D ZNH sing 521 n n 
ND C4D ZNH doub 522 n n 
C1D C2D ZNH sing 523 n n 
C2D C3D ZNH doub 524 n n 
C2D CMD ZNH sing 525 n n 
C3D C4D ZNH sing 526 n n 
C3D CAD ZNH sing 527 n n 
CMD HMD1 ZNH sing 528 n n 
CMD HMD2 ZNH sing 529 n n 
CMD HMD3 ZNH sing 530 n n 
CAD CBD ZNH sing 531 n n 
CAD HAD1 ZNH sing 532 n n 
CAD HAD2 ZNH sing 533 n n 
CBD CGD ZNH sing 534 n n 
CBD HBD1 ZNH sing 535 n n 
CBD HBD2 ZNH sing 536 n n 
CGD O1D ZNH doub 537 n n 
CGD O2D ZNH sing 538 n n 
O2D H2D ZNH sing 539 n n 
#
_atom_sites.entry_id                     2B10 
_atom_sites.fract_transf_matrix[1][1]    0.022434 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005823 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZNH A 1 295 295 ZNH ZNH . 
F 4 HEM B 1 409 409 HEM HEM . 
G 3 ZNH C 1 795 795 ZNH ZNH . 
H 4 HEM D 1 909 909 HEM HEM . 
I 5 HOH A 1 1001 1001 HOH HOH . 
I 5 HOH A 2 1002 1002 HOH HOH . 
I 5 HOH A 3 1003 1003 HOH HOH . 
I 5 HOH A 4 1004 1004 HOH HOH . 
I 5 HOH A 5 1005 1005 HOH HOH . 
I 5 HOH A 6 1006 1006 HOH HOH . 
I 5 HOH A 7 1007 1007 HOH HOH . 
I 5 HOH A 8 1008 1008 HOH HOH . 
I 5 HOH A 9 1009 1009 HOH HOH . 
I 5 HOH A 10 1010 1010 HOH HOH . 
I 5 HOH A 11 1011 1011 HOH HOH . 
I 5 HOH A 12 1012 1012 HOH HOH . 
I 5 HOH A 13 1013 1013 HOH HOH . 
I 5 HOH A 14 1014 1014 HOH HOH . 
J 5 HOH C 1 1016 1016 HOH HOH . 
J 5 HOH C 2 1017 1017 HOH HOH . 
J 5 HOH C 3 1018 1018 HOH HOH . 
J 5 HOH C 4 1019 1019 HOH HOH . 
K 5 HOH D 1 1015 1015 HOH HOH . 
K 5 HOH D 2 1020 1020 HOH HOH . 
K 5 HOH D 3 1021 1021 HOH HOH . 
K 5 HOH D 4 1022 1022 HOH HOH . 
K 5 HOH D 5 1023 1023 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 ZN ZN ZNH . . . G 3 2.352 8.225 86.177 1 11.56 ? ZN ZNH 795 C 1 
HETATM 2 C CHA ZNH . . . G 3 -0.409 7.652 84.259 1 10.16 ? CHA ZNH 795 C 1 
HETATM 3 C CHB ZNH . . . G 3 0.328 7.721 88.998 1 18.58 ? CHB ZNH 795 C 1 
HETATM 4 C CHC ZNH . . . G 3 5.106 8.234 88.102 1 17.08 ? CHC ZNH 795 C 1 
HETATM 5 C CHD ZNH . . . G 3 4.259 8.167 83.445 1 2.88 ? CHD ZNH 795 C 1 
HETATM 6 N NA ZNH . . . G 3 0.283 7.806 86.55 1 18.16 ? NA ZNH 795 C 1 
HETATM 7 C C1A ZNH . . . G 3 -0.651 7.622 85.62 1 15.7 ? C1A ZNH 795 C 1 
HETATM 8 C C2A ZNH . . . G 3 -1.855 7.359 86.272 1 20.43 ? C2A ZNH 795 C 1 
HETATM 9 C C3A ZNH . . . G 3 -1.684 7.407 87.577 1 21.71 ? C3A ZNH 795 C 1 
HETATM 10 C C4A ZNH . . . G 3 -0.353 7.655 87.768 1 19.37 ? C4A ZNH 795 C 1 
HETATM 11 C CMA ZNH . . . G 3 -2.756 7.464 88.659 1 26.9 ? CMA ZNH 795 C 1 
HETATM 12 C CAA ZNH . . . G 3 -3.157 7.094 85.566 1 19.12 ? CAA ZNH 795 C 1 
HETATM 13 C CBA ZNH . . . G 3 -3.364 5.78 84.858 1 29.2 ? CBA ZNH 795 C 1 
HETATM 14 C CGA ZNH . . . G 3 -4.66 5.708 84.131 1 19.34 ? CGA ZNH 795 C 1 
HETATM 15 O O1A ZNH . . . G 3 -5.698 6.024 84.748 1 20.56 ? O1A ZNH 795 C 1 
HETATM 16 O O2A ZNH . . . G 3 -4.64 5.327 82.942 1 28.39 ? O2A ZNH 795 C 1 
HETATM 17 N NB ZNH . . . G 3 2.656 8.102 88.215 1 18.27 ? NB ZNH 795 C 1 
HETATM 18 C C1B ZNH . . . G 3 1.734 7.928 89.24 1 19.39 ? C1B ZNH 795 C 1 
HETATM 19 C C2B ZNH . . . G 3 2.445 7.917 90.549 1 16.69 ? C2B ZNH 795 C 1 
HETATM 20 C C3B ZNH . . . G 3 3.81 8.1 90.321 1 21.92 ? C3B ZNH 795 C 1 
HETATM 21 C C4B ZNH . . . G 3 3.899 8.171 88.829 1 15.05 ? C4B ZNH 795 C 1 
HETATM 22 C CMB ZNH . . . G 3 1.715 7.732 91.867 1 29.2 ? CMB ZNH 795 C 1 
HETATM 23 C CAB ZNH . . . G 3 4.903 8.38 91.166 1 22 ? CAB ZNH 795 C 1 
HETATM 24 C CBB ZNH . . . G 3 4.945 8.963 92.414 1 29.9 ? CBB ZNH 795 C 1 
HETATM 25 N NC ZNH . . . G 3 4.351 8.264 85.843 1 12.24 ? NC ZNH 795 C 1 
HETATM 26 C C1C ZNH . . . G 3 5.342 8.262 86.762 1 13.34 ? C1C ZNH 795 C 1 
HETATM 27 C C2C ZNH . . . G 3 6.695 8.21 86.207 1 10.03 ? C2C ZNH 795 C 1 
HETATM 28 C C3C ZNH . . . G 3 6.514 8.167 84.847 1 15.08 ? C3C ZNH 795 C 1 
HETATM 29 C C4C ZNH . . . G 3 4.986 8.229 84.659 1 17.09 ? C4C ZNH 795 C 1 
HETATM 30 C CMC ZNH . . . G 3 7.952 8.187 87.078 1 6.51 ? CMC ZNH 795 C 1 
HETATM 31 C CAC ZNH . . . G 3 7.388 7.844 83.799 1 18.77 ? CAC ZNH 795 C 1 
HETATM 32 C CBC ZNH . . . G 3 8.708 8.053 83.604 1 8.66 ? CBC ZNH 795 C 1 
HETATM 33 N ND ZNH . . . G 3 2.004 7.88 84.228 1 12.4 ? ND ZNH 795 C 1 
HETATM 34 C C1D ZNH . . . G 3 2.878 8.043 83.228 1 3.24 ? C1D ZNH 795 C 1 
HETATM 35 C C2D ZNH . . . G 3 2.15 8.113 81.927 1 3.89 ? C2D ZNH 795 C 1 
HETATM 36 C C3D ZNH . . . G 3 0.831 7.947 82.138 1 5.4 ? C3D ZNH 795 C 1 
HETATM 37 C C4D ZNH . . . G 3 0.769 7.798 83.595 1 11.52 ? C4D ZNH 795 C 1 
HETATM 38 C CMD ZNH . . . G 3 2.759 8.513 80.622 1 17.38 ? CMD ZNH 795 C 1 
HETATM 39 C CAD ZNH . . . G 3 -0.361 8.116 81.187 1 2 ? CAD ZNH 795 C 1 
HETATM 40 C CBD ZNH . . . G 3 -0.758 6.877 80.396 1 2.72 ? CBD ZNH 795 C 1 
HETATM 41 C CGD ZNH . . . G 3 -2.001 7.038 79.548 1 2 ? CGD ZNH 795 C 1 
HETATM 42 O O1D ZNH . . . G 3 -2.6 5.992 79.199 1 2.01 ? O1D ZNH 795 C 1 
HETATM 43 O O2D ZNH . . . G 3 -2.376 8.179 79.209 1 2.98 ? O2D ZNH 795 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#