data_2B12 # _model_server_result.job_id oQLIIvkLuowjqvTnUdy-jw _model_server_result.datetime_utc '2025-02-18 02:10:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":109}' # _entry.id 2B12 # _exptl.entry_id 2B12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B12 _cell.length_a 43.789 _cell.length_b 51.832 _cell.length_c 183.645 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 19 B CYS 14 1_555 D CAB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.154 ? covale ? covale2 B SG CYS 22 B CYS 17 1_555 D CAC HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2B12 _atom_sites.fract_transf_matrix[1][1] 0.022837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZNH A 1 295 295 ZNH ZNH . D 4 HEC B 1 109 109 HEC HEM . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 509 509 HOH HOH . E 5 HOH A 7 510 510 HOH HOH . E 5 HOH A 8 511 511 HOH HOH . E 5 HOH A 9 513 513 HOH HOH . E 5 HOH A 10 514 514 HOH HOH . E 5 HOH A 11 515 515 HOH HOH . E 5 HOH A 12 516 516 HOH HOH . E 5 HOH A 13 517 517 HOH HOH . E 5 HOH A 14 518 518 HOH HOH . E 5 HOH A 15 520 520 HOH HOH . E 5 HOH A 16 521 521 HOH HOH . E 5 HOH A 17 522 522 HOH HOH . E 5 HOH A 18 524 524 HOH HOH . E 5 HOH A 19 528 528 HOH HOH . F 5 HOH B 1 525 525 HOH HOH . F 5 HOH B 2 526 526 HOH HOH . F 5 HOH B 3 527 527 HOH HOH . F 5 HOH B 4 529 529 HOH HOH . F 5 HOH B 5 530 530 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 4 11.637 -3.385 56.706 1 2 ? FE HEC 109 B 1 HETATM 2 C CHA HEC . . . D 4 8.827 -1.821 55.496 1 2 ? CHA HEC 109 B 1 HETATM 3 C CHB HEC . . . D 4 13.253 -2.806 53.746 1 2 ? CHB HEC 109 B 1 HETATM 4 C CHC HEC . . . D 4 14.615 -4.54 58.081 1 2 ? CHC HEC 109 B 1 HETATM 5 C CHD HEC . . . D 4 9.942 -4.442 59.497 1 2 ? CHD HEC 109 B 1 HETATM 6 N NA HEC . . . D 4 11.162 -2.433 54.923 1 2 ? NA HEC 109 B 1 HETATM 7 C C1A HEC . . . D 4 9.963 -1.858 54.603 1 2 ? C1A HEC 109 B 1 HETATM 8 C C2A HEC . . . D 4 10.018 -1.433 53.282 1 2 ? C2A HEC 109 B 1 HETATM 9 C C3A HEC . . . D 4 11.249 -1.725 52.799 1 2 ? C3A HEC 109 B 1 HETATM 10 C C4A HEC . . . D 4 11.944 -2.362 53.821 1 2 ? C4A HEC 109 B 1 HETATM 11 C CMA HEC . . . D 4 11.887 -1.287 51.49 1 2 ? CMA HEC 109 B 1 HETATM 12 C CAA HEC . . . D 4 8.922 -0.726 52.542 1 2 ? CAA HEC 109 B 1 HETATM 13 C CBA HEC . . . D 4 7.914 -1.595 51.822 1 4.89 ? CBA HEC 109 B 1 HETATM 14 C CGA HEC . . . D 4 7.231 -0.85 50.705 1 8.38 ? CGA HEC 109 B 1 HETATM 15 O O1A HEC . . . D 4 6.036 -1.104 50.452 1 9.88 ? O1A HEC 109 B 1 HETATM 16 O O2A HEC . . . D 4 7.893 -0.005 50.071 1 4.65 ? O2A HEC 109 B 1 HETATM 17 N NB HEC . . . D 4 13.657 -3.496 56.065 1 2 ? NB HEC 109 B 1 HETATM 18 C C1B HEC . . . D 4 14.065 -3.351 54.747 1 2 ? C1B HEC 109 B 1 HETATM 19 C C2B HEC . . . D 4 15.392 -3.863 54.563 1 2 ? C2B HEC 109 B 1 HETATM 20 C C3B HEC . . . D 4 15.799 -4.31 55.788 1 2 ? C3B HEC 109 B 1 HETATM 21 C C4B HEC . . . D 4 14.714 -4.078 56.733 1 2 ? C4B HEC 109 B 1 HETATM 22 C CMB HEC . . . D 4 16.118 -4.031 53.203 1 2 ? CMB HEC 109 B 1 HETATM 23 C CAB HEC . . . D 4 16.968 -5.041 56.041 1 2 ? CAB HEC 109 B 1 HETATM 24 C CBB HEC . . . D 4 18.164 -4.473 56.458 1 2 ? CBB HEC 109 B 1 HETATM 25 N NC HEC . . . D 4 12.205 -4.186 58.545 1 2 ? NC HEC 109 B 1 HETATM 26 C C1C HEC . . . D 4 13.485 -4.59 58.926 1 2 ? C1C HEC 109 B 1 HETATM 27 C C2C HEC . . . D 4 13.438 -5.273 60.177 1 3.23 ? C2C HEC 109 B 1 HETATM 28 C C3C HEC . . . D 4 12.107 -5.311 60.561 1 2 ? C3C HEC 109 B 1 HETATM 29 C C4C HEC . . . D 4 11.339 -4.634 59.518 1 2 ? C4C HEC 109 B 1 HETATM 30 C CMC HEC . . . D 4 14.627 -5.939 60.849 1 8.88 ? CMC HEC 109 B 1 HETATM 31 C CAC HEC . . . D 4 11.583 -6.003 61.672 1 3.37 ? CAC HEC 109 B 1 HETATM 32 C CBC HEC . . . D 4 11.278 -5.427 62.91 1 21.58 ? CBC HEC 109 B 1 HETATM 33 N ND HEC . . . D 4 9.669 -3.124 57.453 1 2 ? ND HEC 109 B 1 HETATM 34 C C1D HEC . . . D 4 9.147 -3.744 58.578 1 2 ? C1D HEC 109 B 1 HETATM 35 C C2D HEC . . . D 4 7.797 -3.365 58.668 1 2 ? C2D HEC 109 B 1 HETATM 36 C C3D HEC . . . D 4 7.479 -2.519 57.603 1 2 ? C3D HEC 109 B 1 HETATM 37 C C4D HEC . . . D 4 8.657 -2.389 56.823 1 2 ? C4D HEC 109 B 1 HETATM 38 C CMD HEC . . . D 4 6.982 -3.704 59.869 1 2 ? CMD HEC 109 B 1 HETATM 39 C CAD HEC . . . D 4 6.16 -1.811 57.325 1 2 ? CAD HEC 109 B 1 HETATM 40 C CBD HEC . . . D 4 6.307 -0.337 57.671 1 2 ? CBD HEC 109 B 1 HETATM 41 C CGD HEC . . . D 4 5.004 0.433 57.734 1 2 ? CGD HEC 109 B 1 HETATM 42 O O1D HEC . . . D 4 3.921 -0.111 57.442 1 2 ? O1D HEC 109 B 1 HETATM 43 O O2D HEC . . . D 4 5.078 1.621 58.096 1 2 ? O2D HEC 109 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #