data_2B12 # _model_server_result.job_id W5hN4UPiQ89eLxY8fi4fFg _model_server_result.datetime_utc '2024-11-28 21:16:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":295}' # _entry.id 2B12 # _exptl.entry_id 2B12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.051 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING ZN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B12 _cell.length_a 43.789 _cell.length_b 51.832 _cell.length_c 183.645 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 19 B CYS 14 1_555 D CAB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.154 ? covale ? covale2 B SG CYS 19 B CYS 14 1_555 D CBB HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? covale ? covale3 B SG CYS 22 B CYS 17 1_555 D CAC HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C ZN ZNH . A ZNH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 D FE HEC . B HEC 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C34 H32 N4 O4 Zn' _chem_comp.formula_weight 626.051 _chem_comp.id ZNH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B12 _atom_sites.fract_transf_matrix[1][1] 0.022837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZNH A 1 295 295 ZNH ZNH . D 4 HEC B 1 109 109 HEC HEM . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 509 509 HOH HOH . E 5 HOH A 7 510 510 HOH HOH . E 5 HOH A 8 511 511 HOH HOH . E 5 HOH A 9 513 513 HOH HOH . E 5 HOH A 10 514 514 HOH HOH . E 5 HOH A 11 515 515 HOH HOH . E 5 HOH A 12 516 516 HOH HOH . E 5 HOH A 13 517 517 HOH HOH . E 5 HOH A 14 518 518 HOH HOH . E 5 HOH A 15 520 520 HOH HOH . E 5 HOH A 16 521 521 HOH HOH . E 5 HOH A 17 522 522 HOH HOH . E 5 HOH A 18 524 524 HOH HOH . E 5 HOH A 19 528 528 HOH HOH . F 5 HOH B 1 525 525 HOH HOH . F 5 HOH B 2 526 526 HOH HOH . F 5 HOH B 3 527 527 HOH HOH . F 5 HOH B 4 529 529 HOH HOH . F 5 HOH B 5 530 530 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZNH . . . C 3 8.597 16.597 78.102 1 2 ? ZN ZNH 295 A 1 HETATM 2 C CHA ZNH . . . C 3 11.334 18.105 76.758 1 2 ? CHA ZNH 295 A 1 HETATM 3 C CHB ZNH . . . C 3 10.395 16.276 81.009 1 2 ? CHB ZNH 295 A 1 HETATM 4 C CHC ZNH . . . C 3 5.83 16.143 80.02 1 2 ? CHC ZNH 295 A 1 HETATM 5 C CHD ZNH . . . C 3 6.683 17.972 75.736 1 2 ? CHD ZNH 295 A 1 HETATM 6 N NA ZNH . . . C 3 10.432 17.303 78.838 1 2 ? NA ZNH 295 A 1 HETATM 7 C C1A ZNH . . . C 3 11.489 17.712 78.066 1 2 ? C1A ZNH 295 A 1 HETATM 8 C C2A ZNH . . . C 3 12.75 17.538 78.748 1 2 ? C2A ZNH 295 A 1 HETATM 9 C C3A ZNH . . . C 3 12.488 16.971 79.974 1 2 ? C3A ZNH 295 A 1 HETATM 10 C C4A ZNH . . . C 3 11.053 16.858 79.995 1 2 ? C4A ZNH 295 A 1 HETATM 11 C CMA ZNH . . . C 3 13.457 16.448 81.051 1 2 ? CMA ZNH 295 A 1 HETATM 12 C CAA ZNH . . . C 3 14.118 17.922 78.198 1 2 ? CAA ZNH 295 A 1 HETATM 13 C CBA ZNH . . . C 3 14.555 19.345 78.457 1 2 ? CBA ZNH 295 A 1 HETATM 14 C CGA ZNH . . . C 3 15.85 19.696 77.776 1 2 ? CGA ZNH 295 A 1 HETATM 15 O O1A ZNH . . . C 3 16.859 19.011 78.031 1 2 ? O1A ZNH 295 A 1 HETATM 16 O O2A ZNH . . . C 3 15.856 20.676 77.005 1 2 ? O2A ZNH 295 A 1 HETATM 17 N NB ZNH . . . C 3 8.17 16.385 80.156 1 2 ? NB ZNH 295 A 1 HETATM 18 C C1B ZNH . . . C 3 9.082 16.014 81.105 1 2 ? C1B ZNH 295 A 1 HETATM 19 C C2B ZNH . . . C 3 8.529 15.271 82.226 1 2 ? C2B ZNH 295 A 1 HETATM 20 C C3B ZNH . . . C 3 7.168 15.207 81.962 1 2 ? C3B ZNH 295 A 1 HETATM 21 C C4B ZNH . . . C 3 6.988 15.935 80.687 1 2 ? C4B ZNH 295 A 1 HETATM 22 C CMB ZNH . . . C 3 9.371 14.768 83.419 1 2 ? CMB ZNH 295 A 1 HETATM 23 C CAB ZNH . . . C 3 6.152 14.626 82.733 1 4.1 ? CAB ZNH 295 A 1 HETATM 24 C CBB ZNH . . . C 3 6.069 13.416 83.406 1 15.35 ? CBB ZNH 295 A 1 HETATM 25 N NC ZNH . . . C 3 6.564 16.994 77.931 1 2 ? NC ZNH 295 A 1 HETATM 26 C C1C ZNH . . . C 3 5.561 16.648 78.773 1 2 ? C1C ZNH 295 A 1 HETATM 27 C C2C ZNH . . . C 3 4.268 16.931 78.214 1 2 ? C2C ZNH 295 A 1 HETATM 28 C C3C ZNH . . . C 3 4.505 17.503 76.969 1 2 ? C3C ZNH 295 A 1 HETATM 29 C C4C ZNH . . . C 3 5.956 17.486 76.835 1 2 ? C4C ZNH 295 A 1 HETATM 30 C CMC ZNH . . . C 3 2.967 16.731 78.938 1 2 ? CMC ZNH 295 A 1 HETATM 31 C CAC ZNH . . . C 3 3.713 18.268 76.048 1 2 ? CAC ZNH 295 A 1 HETATM 32 C CBC ZNH . . . C 3 2.411 18.207 75.625 1 2 ? CBC ZNH 295 A 1 HETATM 33 N ND ZNH . . . C 3 8.911 17.889 76.586 1 2 ? ND ZNH 295 A 1 HETATM 34 C C1D ZNH . . . C 3 8.037 18.122 75.585 1 2 ? C1D ZNH 295 A 1 HETATM 35 C C2D ZNH . . . C 3 8.723 18.478 74.409 1 2 ? C2D ZNH 295 A 1 HETATM 36 C C3D ZNH . . . C 3 10.051 18.539 74.618 1 3.16 ? C3D ZNH 295 A 1 HETATM 37 C C4D ZNH . . . C 3 10.143 18.167 76.03 1 2 ? C4D ZNH 295 A 1 HETATM 38 C CMD ZNH . . . C 3 8.117 18.572 73.082 1 2 ? CMD ZNH 295 A 1 HETATM 39 C CAD ZNH . . . C 3 11.179 18.809 73.606 1 2 ? CAD ZNH 295 A 1 HETATM 40 C CBD ZNH . . . C 3 11.899 20.139 73.687 1 2 ? CBD ZNH 295 A 1 HETATM 41 C CGD ZNH . . . C 3 12.905 20.33 72.576 1 2.54 ? CGD ZNH 295 A 1 HETATM 42 O O1D ZNH . . . C 3 13.142 21.495 72.205 1 13.87 ? O1D ZNH 295 A 1 HETATM 43 O O2D ZNH . . . C 3 13.462 19.33 72.075 1 2 ? O2D ZNH 295 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #