data_2B16 # _model_server_result.job_id yIQ1catv9E5_fJ9ZP0gw_A _model_server_result.datetime_utc '2024-11-25 03:54:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":128}' # _entry.id 2B16 # _exptl.entry_id 2B16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.106 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-DINITROPHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B16 _cell.length_a 42.542 _cell.length_b 85.869 _cell.length_c 63.603 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 42.542 85.869 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H4 N2 O5' _chem_comp.formula_weight 184.106 _chem_comp.id DNF _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-DINITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DNF sing 83 n n C1 C2 DNF sing 84 n y C1 C6 DNF doub 85 n y O1 HO1 DNF sing 86 n n C2 N2 DNF sing 87 n n C2 C3 DNF doub 88 n y N2 O21 DNF doub 89 n n N2 O22 DNF sing 90 n n C3 C4 DNF sing 91 n y C3 H3 DNF sing 92 n n C4 N4 DNF sing 93 n n C4 C5 DNF doub 94 n y N4 O41 DNF doub 95 n n N4 O42 DNF sing 96 n n C5 C6 DNF sing 97 n y C5 H5 DNF sing 98 n n C6 H6 DNF sing 99 n n # _atom_sites.entry_id 2B16 _atom_sites.fract_transf_matrix[1][1] 0.023506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DNF A 1 128 2 DNF DNF . D 2 DNF B 1 128 1 DNF DNF . E 3 HOH A 1 2019 2019 HOH HOH . E 3 HOH A 2 2024 2024 HOH HOH . E 3 HOH A 3 2028 2028 HOH HOH . E 3 HOH A 4 2029 2029 HOH HOH . E 3 HOH A 5 2030 2030 HOH HOH . E 3 HOH A 6 2031 2031 HOH HOH . E 3 HOH A 7 2032 2032 HOH HOH . E 3 HOH A 8 2033 2033 HOH HOH . E 3 HOH A 9 2034 2034 HOH HOH . E 3 HOH A 10 2035 2035 HOH HOH . E 3 HOH A 11 2036 2036 HOH HOH . E 3 HOH A 12 2037 2037 HOH HOH . E 3 HOH A 13 2038 2038 HOH HOH . E 3 HOH A 14 2039 2039 HOH HOH . E 3 HOH A 15 2040 2040 HOH HOH . E 3 HOH A 16 2041 2041 HOH HOH . E 3 HOH A 17 2043 2043 HOH HOH . E 3 HOH A 18 2044 2044 HOH HOH . E 3 HOH A 19 2056 2056 HOH HOH . E 3 HOH A 20 2058 2058 HOH HOH . E 3 HOH A 21 2059 2059 HOH HOH . E 3 HOH A 22 2062 2062 HOH HOH . E 3 HOH A 23 2063 2063 HOH HOH . E 3 HOH A 24 2064 2064 HOH HOH . E 3 HOH A 25 2065 2065 HOH HOH . E 3 HOH A 26 2066 2066 HOH HOH . E 3 HOH A 27 2067 2067 HOH HOH . E 3 HOH A 28 2068 2068 HOH HOH . E 3 HOH A 29 2069 2069 HOH HOH . E 3 HOH A 30 2070 2070 HOH HOH . E 3 HOH A 31 2071 2071 HOH HOH . E 3 HOH A 32 2072 2072 HOH HOH . E 3 HOH A 33 2073 2073 HOH HOH . E 3 HOH A 34 2074 2074 HOH HOH . E 3 HOH A 35 2075 2075 HOH HOH . E 3 HOH A 36 2076 2076 HOH HOH . E 3 HOH A 37 2087 2087 HOH HOH . E 3 HOH A 38 2090 2090 HOH HOH . E 3 HOH A 39 2092 2092 HOH HOH . E 3 HOH A 40 2093 2093 HOH HOH . E 3 HOH A 41 2094 2094 HOH HOH . E 3 HOH A 42 2095 2095 HOH HOH . E 3 HOH A 43 2096 2096 HOH HOH . E 3 HOH A 44 2097 2097 HOH HOH . E 3 HOH A 45 2098 2098 HOH HOH . E 3 HOH A 46 2099 2099 HOH HOH . E 3 HOH A 47 2100 2100 HOH HOH . E 3 HOH A 48 2101 2101 HOH HOH . E 3 HOH A 49 2102 2102 HOH HOH . E 3 HOH A 50 2103 2103 HOH HOH . E 3 HOH A 51 2109 2109 HOH HOH . E 3 HOH A 52 2111 2111 HOH HOH . E 3 HOH A 53 2112 2112 HOH HOH . E 3 HOH A 54 2114 2114 HOH HOH . E 3 HOH A 55 2115 2115 HOH HOH . E 3 HOH A 56 2116 2116 HOH HOH . E 3 HOH A 57 2117 2117 HOH HOH . E 3 HOH A 58 2118 2118 HOH HOH . E 3 HOH A 59 2119 2119 HOH HOH . E 3 HOH A 60 2123 2123 HOH HOH . E 3 HOH A 61 2124 2124 HOH HOH . E 3 HOH A 62 2125 2125 HOH HOH . E 3 HOH A 63 2126 2126 HOH HOH . E 3 HOH A 64 2127 2127 HOH HOH . E 3 HOH A 65 2128 2128 HOH HOH . E 3 HOH A 66 2139 2139 HOH HOH . E 3 HOH A 67 2140 2140 HOH HOH . E 3 HOH A 68 2141 2141 HOH HOH . E 3 HOH A 69 2142 2142 HOH HOH . E 3 HOH A 70 2144 2144 HOH HOH . E 3 HOH A 71 2145 2145 HOH HOH . E 3 HOH A 72 2146 2146 HOH HOH . E 3 HOH A 73 2147 2147 HOH HOH . E 3 HOH A 74 2148 2148 HOH HOH . E 3 HOH A 75 2151 2151 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2020 2020 HOH HOH . F 3 HOH B 20 2021 2021 HOH HOH . F 3 HOH B 21 2022 2022 HOH HOH . F 3 HOH B 22 2023 2023 HOH HOH . F 3 HOH B 23 2025 2025 HOH HOH . F 3 HOH B 24 2026 2026 HOH HOH . F 3 HOH B 25 2027 2027 HOH HOH . F 3 HOH B 26 2042 2042 HOH HOH . F 3 HOH B 27 2045 2045 HOH HOH . F 3 HOH B 28 2046 2046 HOH HOH . F 3 HOH B 29 2047 2047 HOH HOH . F 3 HOH B 30 2048 2048 HOH HOH . F 3 HOH B 31 2049 2049 HOH HOH . F 3 HOH B 32 2050 2050 HOH HOH . F 3 HOH B 33 2051 2051 HOH HOH . F 3 HOH B 34 2052 2052 HOH HOH . F 3 HOH B 35 2053 2053 HOH HOH . F 3 HOH B 36 2054 2054 HOH HOH . F 3 HOH B 37 2055 2055 HOH HOH . F 3 HOH B 38 2057 2057 HOH HOH . F 3 HOH B 39 2060 2060 HOH HOH . F 3 HOH B 40 2061 2061 HOH HOH . F 3 HOH B 41 2077 2077 HOH HOH . F 3 HOH B 42 2078 2078 HOH HOH . F 3 HOH B 43 2079 2079 HOH HOH . F 3 HOH B 44 2080 2080 HOH HOH . F 3 HOH B 45 2081 2081 HOH HOH . F 3 HOH B 46 2082 2082 HOH HOH . F 3 HOH B 47 2083 2083 HOH HOH . F 3 HOH B 48 2084 2084 HOH HOH . F 3 HOH B 49 2085 2085 HOH HOH . F 3 HOH B 50 2086 2086 HOH HOH . F 3 HOH B 51 2088 2088 HOH HOH . F 3 HOH B 52 2089 2089 HOH HOH . F 3 HOH B 53 2091 2091 HOH HOH . F 3 HOH B 54 2104 2104 HOH HOH . F 3 HOH B 55 2105 2105 HOH HOH . F 3 HOH B 56 2106 2106 HOH HOH . F 3 HOH B 57 2107 2107 HOH HOH . F 3 HOH B 58 2108 2108 HOH HOH . F 3 HOH B 59 2110 2110 HOH HOH . F 3 HOH B 60 2113 2113 HOH HOH . F 3 HOH B 61 2120 2120 HOH HOH . F 3 HOH B 62 2121 2121 HOH HOH . F 3 HOH B 63 2122 2122 HOH HOH . F 3 HOH B 64 2129 2129 HOH HOH . F 3 HOH B 65 2130 2130 HOH HOH . F 3 HOH B 66 2131 2131 HOH HOH . F 3 HOH B 67 2132 2132 HOH HOH . F 3 HOH B 68 2133 2133 HOH HOH . F 3 HOH B 69 2134 2134 HOH HOH . F 3 HOH B 70 2135 2135 HOH HOH . F 3 HOH B 71 2136 2136 HOH HOH . F 3 HOH B 72 2137 2137 HOH HOH . F 3 HOH B 73 2138 2138 HOH HOH . F 3 HOH B 74 2143 2143 HOH HOH . F 3 HOH B 75 2149 2149 HOH HOH . F 3 HOH B 76 2150 2150 HOH HOH . F 3 HOH B 77 2152 2152 HOH HOH . F 3 HOH B 78 2153 2153 HOH HOH . F 3 HOH B 79 2154 2154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNF . . . D 2 21.382 42.868 21.5 0.5 24.75 ? C1 DNF 128 B 1 HETATM 2 O O1 DNF . . . D 2 21.438 42.792 20.15 0.5 24.58 ? O1 DNF 128 B 1 HETATM 3 C C2 DNF . . . D 2 21.391 41.706 22.279 0.5 24.37 ? C2 DNF 128 B 1 HETATM 4 N N2 DNF . . . D 2 21.462 40.393 21.676 0.5 24.35 ? N2 DNF 128 B 1 HETATM 5 O O21 DNF . . . D 2 22.008 40.24 20.597 0.5 23.79 ? O21 DNF 128 B 1 HETATM 6 O O22 DNF . . . D 2 20.981 39.467 22.267 0.5 23.2 ? O22 DNF 128 B 1 HETATM 7 C C3 DNF . . . D 2 21.333 41.769 23.675 0.5 25.3 ? C3 DNF 128 B 1 HETATM 8 C C4 DNF . . . D 2 21.261 43.014 24.304 0.5 26.03 ? C4 DNF 128 B 1 HETATM 9 N N4 DNF . . . D 2 21.199 43.072 25.748 0.5 26.98 ? N4 DNF 128 B 1 HETATM 10 O O41 DNF . . . D 2 20.971 42.057 26.386 0.5 29.04 ? O41 DNF 128 B 1 HETATM 11 O O42 DNF . . . D 2 21.371 44.143 26.306 0.5 29.06 ? O42 DNF 128 B 1 HETATM 12 C C5 DNF . . . D 2 21.248 44.184 23.535 0.5 25.4 ? C5 DNF 128 B 1 HETATM 13 C C6 DNF . . . D 2 21.309 44.112 22.137 0.5 24.7 ? C6 DNF 128 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #