data_2B21 # _model_server_result.job_id 7872QXJlO_nDZTdnPFEgqg _model_server_result.datetime_utc '2025-08-14 17:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 2B21 # _exptl.entry_id 2B21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B21 _cell.length_a 83.071 _cell.length_b 83.071 _cell.length_c 107.168 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 6 A THR 6 1_555 F K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc2 A O LEU 8 A LEU 8 1_555 F K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 A N VAL 11 A VAL 11 1_555 F K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.619 ? metalc ? metalc4 A O VAL 11 A VAL 11 1_555 F K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc5 A O GLN 98 A GLN 98 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 A OG1 THR 112 A THR 112 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 A O GLU 164 A GLU 164 4_665 F K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc8 A OD2 ASP 246 A ASP 246 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc9 A OD1 ASP 246 A ASP 246 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 A O ALA 282 A ALA 282 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc11 A O THR 283 A THR 283 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.202 ? metalc ? metalc12 A O TYR 301 A TYR 301 5_564 E K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc13 A OD2 ASP 302 A ASP 302 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc14 A OD2 ASP 308 A ASP 308 5_564 E K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc15 A OD1 ASP 308 A ASP 308 5_564 E K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc16 G O2G ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc17 G O1B ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc18 G O3G ANP . A ANP 401 6_655 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? metalc ? metalc19 G O2' ANP . A ANP 401 1_555 E K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc20 G O3' ANP . A ANP 401 1_555 E K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc21 B MG MG . A MG 501 1_555 H O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc22 B MG MG . A MG 501 1_555 H O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc23 B MG MG . A MG 501 1_555 H O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc24 C MG MG . A MG 502 1_555 H O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc25 C MG MG . A MG 502 1_555 H O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc26 C MG MG . A MG 502 1_555 H O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc27 C MG MG . A MG 502 1_555 H O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc28 D K K . A K 503 1_555 H O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc29 D K K . A K 503 1_555 H O HOH . A HOH 621 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc30 D K K . A K 503 1_555 H O HOH . A HOH 632 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc31 E K K . A K 505 1_555 H O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc32 F K K . A K 506 1_555 H O HOH . A HOH 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2B21 _atom_sites.fract_transf_matrix[1][1] 0.012038 _atom_sites.fract_transf_matrix[1][2] 0.00695 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 2 MG A 1 502 502 MG MG . D 3 K A 1 503 503 K K . E 3 K A 1 505 505 K K . F 3 K A 1 506 506 K K . G 4 ANP A 1 401 401 ANP ANP . H 5 HOH A 1 601 601 HOH HOH . H 5 HOH A 2 602 602 HOH HOH . H 5 HOH A 3 603 603 HOH HOH . H 5 HOH A 4 604 604 HOH HOH . H 5 HOH A 5 605 605 HOH HOH . H 5 HOH A 6 606 606 HOH HOH . H 5 HOH A 7 607 607 HOH HOH . H 5 HOH A 8 608 608 HOH HOH . H 5 HOH A 9 609 609 HOH HOH . H 5 HOH A 10 610 610 HOH HOH . H 5 HOH A 11 611 611 HOH HOH . H 5 HOH A 12 612 612 HOH HOH . H 5 HOH A 13 613 613 HOH HOH . H 5 HOH A 14 614 614 HOH HOH . H 5 HOH A 15 615 615 HOH HOH . H 5 HOH A 16 616 616 HOH HOH . H 5 HOH A 17 617 617 HOH HOH . H 5 HOH A 18 618 618 HOH HOH . H 5 HOH A 19 619 619 HOH HOH . H 5 HOH A 20 620 620 HOH HOH . H 5 HOH A 21 621 621 HOH HOH . H 5 HOH A 22 622 622 HOH HOH . H 5 HOH A 23 623 623 HOH HOH . H 5 HOH A 24 624 624 HOH HOH . H 5 HOH A 25 625 625 HOH HOH . H 5 HOH A 26 626 626 HOH HOH . H 5 HOH A 27 627 627 HOH HOH . H 5 HOH A 28 628 628 HOH HOH . H 5 HOH A 29 629 629 HOH HOH . H 5 HOH A 30 630 630 HOH HOH . H 5 HOH A 31 631 631 HOH HOH . H 5 HOH A 32 632 632 HOH HOH . H 5 HOH A 33 633 633 HOH HOH . H 5 HOH A 34 634 634 HOH HOH . H 5 HOH A 35 635 635 HOH HOH . H 5 HOH A 36 636 636 HOH HOH . H 5 HOH A 37 637 637 HOH HOH . H 5 HOH A 38 638 638 HOH HOH . H 5 HOH A 39 639 639 HOH HOH . H 5 HOH A 40 640 640 HOH HOH . H 5 HOH A 41 641 641 HOH HOH . H 5 HOH A 42 642 642 HOH HOH . H 5 HOH A 43 643 643 HOH HOH . H 5 HOH A 44 644 644 HOH HOH . H 5 HOH A 45 645 645 HOH HOH . H 5 HOH A 46 646 646 HOH HOH . H 5 HOH A 47 647 647 HOH HOH . H 5 HOH A 48 648 648 HOH HOH . H 5 HOH A 49 649 649 HOH HOH . H 5 HOH A 50 650 650 HOH HOH . H 5 HOH A 51 651 651 HOH HOH . H 5 HOH A 52 652 652 HOH HOH . H 5 HOH A 53 653 653 HOH HOH . H 5 HOH A 54 654 654 HOH HOH . H 5 HOH A 55 655 655 HOH HOH . H 5 HOH A 56 656 656 HOH HOH . H 5 HOH A 57 657 657 HOH HOH . H 5 HOH A 58 658 658 HOH HOH . H 5 HOH A 59 659 659 HOH HOH . H 5 HOH A 60 660 660 HOH HOH . H 5 HOH A 61 661 661 HOH HOH . H 5 HOH A 62 662 662 HOH HOH . H 5 HOH A 63 663 663 HOH HOH . H 5 HOH A 64 664 664 HOH HOH . H 5 HOH A 65 665 665 HOH HOH . H 5 HOH A 66 666 666 HOH HOH . H 5 HOH A 67 667 667 HOH HOH . H 5 HOH A 68 668 668 HOH HOH . H 5 HOH A 69 669 669 HOH HOH . H 5 HOH A 70 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 4 27.272 59.05 -10.376 1 26.81 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . G 4 28.557 59.621 -10.125 1 24.45 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . G 4 26.664 58.559 -9.094 1 23.56 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . G 4 26.4 60.063 -10.943 1 26.71 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . G 4 27.91 56.355 -11.051 1 26.11 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . G 4 27.171 55.877 -9.844 1 24.16 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . G 4 29.345 56.348 -10.784 1 24.19 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . G 4 27.427 57.8 -11.463 1 24.24 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . G 4 26.272 54.468 -12.335 1 26.04 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . G 4 26.378 53.367 -11.267 1 25.86 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . G 4 25.069 55.299 -12.093 1 27.31 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . G 4 27.614 55.381 -12.297 1 28.04 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . G 4 26.169 53.744 -13.802 1 28.73 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . G 4 25.779 54.499 -15.052 1 27.84 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . G 4 25.987 53.691 -16.085 1 30.05 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . G 4 25.438 52.348 -15.794 1 30.4 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . G 4 25.151 54.123 -17.312 1 28.7 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . G 4 25.469 55.344 -17.857 1 29.48 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . G 4 24.978 52.799 -18.115 1 30.14 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . G 4 26.16 52.66 -19.084 1 31.36 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . G 4 25.123 51.705 -17.048 1 29.48 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . G 4 23.895 51.143 -16.955 1 29.7 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . G 4 22.901 51.426 -15.998 1 28.59 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . G 4 21.857 50.708 -16.239 1 28.59 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . G 4 22.093 49.94 -17.327 1 25.94 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . G 4 21.344 49.017 -18.016 1 23.27 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . G 4 20.08 48.727 -17.617 1 19.65 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . G 4 21.904 48.383 -19.136 1 24.78 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . G 4 23.229 48.679 -19.571 1 27.96 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . G 4 23.994 49.589 -18.915 1 29.16 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . G 4 23.372 50.201 -17.783 1 27.88 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #