data_2B25
#
_model_server_result.job_id            yWidjqAzlimYovY0LL1L5Q 
_model_server_result.datetime_utc      '2025-09-01 04:33:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    2B25 
#
_exptl.entry_id    2B25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2B25 
_cell.length_a            75.533 
_cell.length_b            157.106 
_cell.length_c            113.492 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA,PQS tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 56.746 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     2B25 
_atom_sites.fract_transf_matrix[1][1]    0.01324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 601 601 SAM SAM . 
D 3 UNX A 1 701 701 UNX UNX . 
E 3 UNX A 1 702 702 UNX UNX . 
F 2 SAM B 1 602 602 SAM SAM . 
G 3 UNX B 1 703 703 UNX UNX . 
H 3 UNX B 1 704 704 UNX UNX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . C 2 15.535 25.106 28.245 1 36.78 ? N SAM 601 A 1 
HETATM 2 C CA SAM . . . C 2 16.426 24.689 29.313 1 34.95 ? CA SAM 601 A 1 
HETATM 3 C C SAM . . . C 2 15.648 24.457 30.612 1 33.21 ? C SAM 601 A 1 
HETATM 4 O O SAM . . . C 2 16.227 23.978 31.602 1 35.68 ? O SAM 601 A 1 
HETATM 5 C CB SAM . . . C 2 17.509 25.749 29.469 1 34.89 ? CB SAM 601 A 1 
HETATM 6 C CG SAM . . . C 2 18.246 26.064 28.162 1 37.42 ? CG SAM 601 A 1 
HETATM 7 S SD SAM . . . C 2 19.695 27.083 28.505 1 40.84 ? SD SAM 601 A 1 
HETATM 8 C CE SAM . . . C 2 18.969 28.753 28.608 1 46.64 ? CE SAM 601 A 1 
HETATM 9 C C5' SAM . . . C 2 20.592 27.118 26.933 1 39.38 ? C5' SAM 601 A 1 
HETATM 10 C C4' SAM . . . C 2 21.548 25.926 26.899 1 40.34 ? C4' SAM 601 A 1 
HETATM 11 O O4' SAM . . . C 2 21.939 25.563 25.582 1 38.11 ? O4' SAM 601 A 1 
HETATM 12 C C3' SAM . . . C 2 22.839 26.192 27.671 1 40.78 ? C3' SAM 601 A 1 
HETATM 13 O O3' SAM . . . C 2 22.911 25.245 28.706 1 38.71 ? O3' SAM 601 A 1 
HETATM 14 C C2' SAM . . . C 2 23.932 26.023 26.616 1 41.91 ? C2' SAM 601 A 1 
HETATM 15 O O2' SAM . . . C 2 25.142 25.478 27.095 1 45.36 ? O2' SAM 601 A 1 
HETATM 16 C C1' SAM . . . C 2 23.271 25.105 25.613 1 40.47 ? C1' SAM 601 A 1 
HETATM 17 N N9 SAM . . . C 2 23.844 25.22 24.272 1 41.16 ? N9 SAM 601 A 1 
HETATM 18 C C8 SAM . . . C 2 24.165 26.398 23.644 1 42.17 ? C8 SAM 601 A 1 
HETATM 19 N N7 SAM . . . C 2 24.648 26.094 22.41 1 43.29 ? N7 SAM 601 A 1 
HETATM 20 C C5 SAM . . . C 2 24.634 24.754 22.237 1 40.62 ? C5 SAM 601 A 1 
HETATM 21 C C6 SAM . . . C 2 25.025 23.961 21.163 1 41.08 ? C6 SAM 601 A 1 
HETATM 22 N N6 SAM . . . C 2 25.519 24.542 20.067 1 39.8 ? N6 SAM 601 A 1 
HETATM 23 N N1 SAM . . . C 2 24.893 22.58 21.254 1 40.5 ? N1 SAM 601 A 1 
HETATM 24 C C2 SAM . . . C 2 24.388 22.021 22.421 1 41.33 ? C2 SAM 601 A 1 
HETATM 25 N N3 SAM . . . C 2 24.01 22.83 23.49 1 39.92 ? N3 SAM 601 A 1 
HETATM 26 C C4 SAM . . . C 2 24.126 24.181 23.397 1 40.3 ? C4 SAM 601 A 1 
#
_model_server_stats.io_time_ms              4 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           386 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#