data_2B25
#
_model_server_result.job_id            2zxeix_apRzYxhDI3Cexjg 
_model_server_result.datetime_utc      '2025-03-04 15:27:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    2B25 
#
_exptl.entry_id    2B25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2B25 
_cell.length_a            75.533 
_cell.length_b            157.106 
_cell.length_c            113.492 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA,PQS tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 56.746 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     2B25 
_atom_sites.fract_transf_matrix[1][1]    0.01324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 601 601 SAM SAM . 
D 3 UNX A 1 701 701 UNX UNX . 
E 3 UNX A 1 702 702 UNX UNX . 
F 2 SAM B 1 602 602 SAM SAM . 
G 3 UNX B 1 703 703 UNX UNX . 
H 3 UNX B 1 704 704 UNX UNX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . F 2 2.17 63.197 12.961 1 38.27 ? N SAM 602 B 1 
HETATM 2 C CA SAM . . . F 2 1.094 63.343 11.975 1 36.3 ? CA SAM 602 B 1 
HETATM 3 C C SAM . . . F 2 -0.271 63.552 12.647 1 32.97 ? C SAM 602 B 1 
HETATM 4 O O SAM . . . F 2 -1.281 63.714 11.951 1 34.74 ? O SAM 602 B 1 
HETATM 5 C CB SAM . . . F 2 1.114 62.192 10.956 1 35.57 ? CB SAM 602 B 1 
HETATM 6 C CG SAM . . . F 2 2.461 62.046 10.238 1 39.28 ? CG SAM 602 B 1 
HETATM 7 S SD SAM . . . F 2 2.417 61.039 8.724 1 41.7 ? SD SAM 602 B 1 
HETATM 8 C CE SAM . . . F 2 2.471 59.311 9.319 1 47.27 ? CE SAM 602 B 1 
HETATM 9 C C5' SAM . . . F 2 4.138 61.268 8.15 1 39.78 ? C5' SAM 602 B 1 
HETATM 10 C C4' SAM . . . F 2 4.228 62.46 7.201 1 41.27 ? C4' SAM 602 B 1 
HETATM 11 O O4' SAM . . . F 2 5.566 62.958 7.007 1 41.92 ? O4' SAM 602 B 1 
HETATM 12 C C3' SAM . . . F 2 3.659 62.124 5.832 1 40.72 ? C3' SAM 602 B 1 
HETATM 13 O O3' SAM . . . F 2 2.717 63.135 5.537 1 35.37 ? O3' SAM 602 B 1 
HETATM 14 C C2' SAM . . . F 2 4.9 62.164 4.945 1 41.43 ? C2' SAM 602 B 1 
HETATM 15 O O2' SAM . . . F 2 4.62 62.456 3.619 1 44.66 ? O2' SAM 602 B 1 
HETATM 16 C C1' SAM . . . F 2 5.774 63.208 5.615 1 41.5 ? C1' SAM 602 B 1 
HETATM 17 N N9 SAM . . . F 2 7.212 63.129 5.279 1 41.66 ? N9 SAM 602 B 1 
HETATM 18 C C8 SAM . . . F 2 7.964 62.015 4.963 1 39.74 ? C8 SAM 602 B 1 
HETATM 19 N N7 SAM . . . F 2 9.243 62.421 4.738 1 38.02 ? N7 SAM 602 B 1 
HETATM 20 C C5 SAM . . . F 2 9.331 63.762 4.904 1 38.75 ? C5 SAM 602 B 1 
HETATM 21 C C6 SAM . . . F 2 10.377 64.682 4.788 1 41.45 ? C6 SAM 602 B 1 
HETATM 22 N N6 SAM . . . F 2 11.593 64.262 4.459 1 42.58 ? N6 SAM 602 B 1 
HETATM 23 N N1 SAM . . . F 2 10.17 66.045 5.026 1 41.71 ? N1 SAM 602 B 1 
HETATM 24 C C2 SAM . . . F 2 8.898 66.49 5.358 1 39.36 ? C2 SAM 602 B 1 
HETATM 25 N N3 SAM . . . F 2 7.864 65.566 5.463 1 39.89 ? N3 SAM 602 B 1 
HETATM 26 C C4 SAM . . . F 2 8.066 64.226 5.251 1 40.99 ? C4 SAM 602 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#