data_2B35 # _model_server_result.job_id 5GzLqfdXaRNfsC4UhbOztg _model_server_result.datetime_utc '2024-11-22 00:37:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 2B35 # _exptl.entry_id 2B35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.69 _cell.angle_gamma 90 _cell.entry_id 2B35 _cell.length_a 99.955 _cell.length_b 81.827 _cell.length_c 188.656 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1,2 C,D,E,F,K,L,M,N,O,P,Q,R 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 2B35 _atom_sites.fract_transf_matrix[1][1] 0.01001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 TCL A 1 300 300 TCL TCL . H 3 NAD A 1 301 301 NAD NAD . I 2 TCL B 1 302 302 TCL TCL . J 3 NAD B 1 303 303 NAD NAD . K 2 TCL C 1 304 304 TCL TCL . L 3 NAD C 1 305 305 NAD NAD . M 2 TCL D 1 306 306 TCL TCL . N 3 NAD D 1 307 307 NAD NAD . O 2 TCL E 1 309 309 TCL TCL . P 3 NAD E 1 310 310 NAD NAD . Q 2 TCL F 1 311 311 TCL TCL . R 3 NAD F 1 312 302 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . H 3 19.488 11.324 16.304 1 33.61 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . H 3 20.484 12.03 15.464 1 34.53 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . H 3 19.206 12.087 17.539 1 30.85 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . H 3 19.972 9.804 16.571 1 32.18 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . H 3 20.526 8.977 15.561 1 32.62 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . H 3 21.503 7.982 16.198 1 31.9 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . H 3 22.185 7.163 15.252 1 31.32 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . H 3 22.594 8.724 16.954 1 31.17 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . H 3 22.425 8.501 18.33 1 30.69 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . H 3 23.888 8.185 16.376 1 30.92 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . H 3 24.938 8.072 17.309 1 32.63 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . H 3 23.424 6.848 15.845 1 30.98 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . H 3 24.416 6.284 14.931 1 30.18 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . H 3 24.846 6.846 13.759 1 31 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . H 3 25.783 6.04 13.211 1 30.95 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . H 3 25.946 4.971 14.025 1 31.81 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . H 3 26.763 3.86 13.95 1 31.38 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . H 3 27.606 3.751 12.935 1 32.68 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . H 3 26.716 2.907 14.947 1 30.75 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . H 3 25.875 3.037 16.029 1 29.91 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . H 3 25.073 4.16 16.095 1 31.4 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . H 3 25.095 5.109 15.116 1 30.6 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . H 3 18.203 11.042 15.353 1 32.82 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . H 3 16.655 10.811 15.756 1 29.31 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . H 3 15.944 11.923 15.084 1 28.98 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . H 3 16.495 10.466 17.164 1 28.26 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . H 3 16.353 9.48 14.931 1 30.44 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . H 3 16.695 8.19 15.384 1 26.24 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . H 3 16.012 7.233 14.432 1 25.53 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . H 3 14.653 7.6 14.212 1 25.93 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . H 3 16.67 7.277 13.077 1 26.03 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . H 3 16.696 5.986 12.566 1 25.32 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . H 3 15.757 8.131 12.241 1 27.11 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . H 3 15.938 7.886 10.873 1 27.56 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . H 3 14.393 7.742 12.816 1 28.25 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . H 3 13.321 8.735 12.566 1 27.22 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . H 3 13.411 9.994 13.075 1 28.75 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . H 3 12.41 10.937 12.865 1 30.58 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . H 3 12.799 12.38 12.964 1 34.54 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . H 3 11.987 13.392 12.449 1 36.65 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . H 3 13.945 12.709 13.54 1 37.31 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . H 3 11.281 10.582 12.135 1 29.92 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . H 3 11.183 9.288 11.62 1 29.96 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . H 3 12.218 8.378 11.852 1 29.27 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #