data_2B35
#
_model_server_result.job_id            l-La_aLOND1Jyuhd2kXtkA 
_model_server_result.datetime_utc      '2024-11-22 00:38:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    2B35 
#
_exptl.entry_id    2B35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.69 
_cell.angle_gamma         90 
_cell.entry_id            2B35 
_cell.length_a            99.955 
_cell.length_b            81.827 
_cell.length_c            188.656 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J 1 1,2 
C,D,E,F,K,L,M,N,O,P,Q,R 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     2B35 
_atom_sites.fract_transf_matrix[1][1]    0.01001 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 TCL A 1 300 300 TCL TCL . 
H 3 NAD A 1 301 301 NAD NAD . 
I 2 TCL B 1 302 302 TCL TCL . 
J 3 NAD B 1 303 303 NAD NAD . 
K 2 TCL C 1 304 304 TCL TCL . 
L 3 NAD C 1 305 305 NAD NAD . 
M 2 TCL D 1 306 306 TCL TCL . 
N 3 NAD D 1 307 307 NAD NAD . 
O 2 TCL E 1 309 309 TCL TCL . 
P 3 NAD E 1 310 310 NAD NAD . 
Q 2 TCL F 1 311 311 TCL TCL . 
R 3 NAD F 1 312 302 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 3 19.711 -12.676 -16.008 1 30.99 ? PA NAD 303 B 1 
HETATM 2 O O1A NAD . . . J 3 20.714 -13.341 -15.129 1 28.92 ? O1A NAD 303 B 1 
HETATM 3 O O2A NAD . . . J 3 19.519 -13.318 -17.339 1 26.84 ? O2A NAD 303 B 1 
HETATM 4 O O5B NAD . . . J 3 20.029 -11.107 -16.114 1 28.81 ? O5B NAD 303 B 1 
HETATM 5 C C5B NAD . . . J 3 20.704 -10.392 -15.111 1 28.87 ? C5B NAD 303 B 1 
HETATM 6 C C4B NAD . . . J 3 21.606 -9.461 -15.894 1 28.96 ? C4B NAD 303 B 1 
HETATM 7 O O4B NAD . . . J 3 22.247 -8.508 -15.053 1 28.98 ? O4B NAD 303 B 1 
HETATM 8 C C3B NAD . . . J 3 22.674 -10.264 -16.645 1 29.03 ? C3B NAD 303 B 1 
HETATM 9 O O3B NAD . . . J 3 22.546 -10.071 -18.037 1 28.6 ? O3B NAD 303 B 1 
HETATM 10 C C2B NAD . . . J 3 23.967 -9.724 -16.054 1 28.8 ? C2B NAD 303 B 1 
HETATM 11 O O2B NAD . . . J 3 25.043 -9.689 -16.947 1 28 ? O2B NAD 303 B 1 
HETATM 12 C C1B NAD . . . J 3 23.548 -8.333 -15.585 1 29.27 ? C1B NAD 303 B 1 
HETATM 13 N N9A NAD . . . J 3 24.527 -7.77 -14.639 1 28.9 ? N9A NAD 303 B 1 
HETATM 14 C C8A NAD . . . J 3 24.958 -8.327 -13.468 1 28.32 ? C8A NAD 303 B 1 
HETATM 15 N N7A NAD . . . J 3 25.877 -7.507 -12.931 1 26.98 ? N7A NAD 303 B 1 
HETATM 16 C C5A NAD . . . J 3 26.037 -6.436 -13.738 1 27.5 ? C5A NAD 303 B 1 
HETATM 17 C C6A NAD . . . J 3 26.849 -5.316 -13.649 1 28.11 ? C6A NAD 303 B 1 
HETATM 18 N N6A NAD . . . J 3 27.62 -5.169 -12.578 1 28.98 ? N6A NAD 303 B 1 
HETATM 19 N N1A NAD . . . J 3 26.807 -4.357 -14.648 1 28.67 ? N1A NAD 303 B 1 
HETATM 20 C C2A NAD . . . J 3 25.959 -4.514 -15.742 1 27.74 ? C2A NAD 303 B 1 
HETATM 21 N N3A NAD . . . J 3 25.165 -5.651 -15.814 1 27.55 ? N3A NAD 303 B 1 
HETATM 22 C C4A NAD . . . J 3 25.199 -6.585 -14.828 1 27.75 ? C4A NAD 303 B 1 
HETATM 23 O O3 NAD . . . J 3 18.319 -12.662 -15.174 1 31.47 ? O3 NAD 303 B 1 
HETATM 24 P PN NAD . . . J 3 16.899 -12.08 -15.684 1 30.72 ? PN NAD 303 B 1 
HETATM 25 O O1N NAD . . . J 3 15.956 -13.074 -15.12 1 32.07 ? O1N NAD 303 B 1 
HETATM 26 O O2N NAD . . . J 3 16.94 -11.776 -17.152 1 29.86 ? O2N NAD 303 B 1 
HETATM 27 O O5D NAD . . . J 3 16.783 -10.752 -14.784 1 28.1 ? O5D NAD 303 B 1 
HETATM 28 C C5D NAD . . . J 3 16.907 -9.43 -15.231 1 25.32 ? C5D NAD 303 B 1 
HETATM 29 C C4D NAD . . . J 3 16.087 -8.545 -14.31 1 24.75 ? C4D NAD 303 B 1 
HETATM 30 O O4D NAD . . . J 3 14.786 -9.095 -14.09 1 24.2 ? O4D NAD 303 B 1 
HETATM 31 C C3D NAD . . . J 3 16.708 -8.419 -12.928 1 25.06 ? C3D NAD 303 B 1 
HETATM 32 O O3D NAD . . . J 3 16.476 -7.122 -12.464 1 23.29 ? O3D NAD 303 B 1 
HETATM 33 C C2D NAD . . . J 3 15.915 -9.366 -12.061 1 25.68 ? C2D NAD 303 B 1 
HETATM 34 O O2D NAD . . . J 3 16.002 -8.976 -10.713 1 26.15 ? O2D NAD 303 B 1 
HETATM 35 C C1D NAD . . . J 3 14.519 -9.169 -12.692 1 24.64 ? C1D NAD 303 B 1 
HETATM 36 N N1N NAD . . . J 3 13.492 -10.19 -12.372 1 22.88 ? N1N NAD 303 B 1 
HETATM 37 C C2N NAD . . . J 3 13.684 -11.517 -12.681 1 23.31 ? C2N NAD 303 B 1 
HETATM 38 C C3N NAD . . . J 3 12.687 -12.453 -12.398 1 23.25 ? C3N NAD 303 B 1 
HETATM 39 C C7N NAD . . . J 3 12.875 -13.922 -12.673 1 22.6 ? C7N NAD 303 B 1 
HETATM 40 O O7N NAD . . . J 3 11.919 -14.783 -12.169 1 24.14 ? O7N NAD 303 B 1 
HETATM 41 N N7N NAD . . . J 3 13.878 -14.412 -13.407 1 23.83 ? N7N NAD 303 B 1 
HETATM 42 C C4N NAD . . . J 3 11.504 -12.032 -11.788 1 24.19 ? C4N NAD 303 B 1 
HETATM 43 C C5N NAD . . . J 3 11.322 -10.688 -11.475 1 23.34 ? C5N NAD 303 B 1 
HETATM 44 C C6N NAD . . . J 3 12.34 -9.777 -11.778 1 23.17 ? C6N NAD 303 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#