data_2B35 # _model_server_result.job_id yWVes3O3MBSxcWAgqhlfdw _model_server_result.datetime_utc '2024-11-21 23:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":307}' # _entry.id 2B35 # _exptl.entry_id 2B35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.69 _cell.angle_gamma 90 _cell.entry_id 2B35 _cell.length_a 99.955 _cell.length_b 81.827 _cell.length_c 188.656 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1,2 C,D,E,F,K,L,M,N,O,P,Q,R 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 2B35 _atom_sites.fract_transf_matrix[1][1] 0.01001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 TCL A 1 300 300 TCL TCL . H 3 NAD A 1 301 301 NAD NAD . I 2 TCL B 1 302 302 TCL TCL . J 3 NAD B 1 303 303 NAD NAD . K 2 TCL C 1 304 304 TCL TCL . L 3 NAD C 1 305 305 NAD NAD . M 2 TCL D 1 306 306 TCL TCL . N 3 NAD D 1 307 307 NAD NAD . O 2 TCL E 1 309 309 TCL TCL . P 3 NAD E 1 310 310 NAD NAD . Q 2 TCL F 1 311 311 TCL TCL . R 3 NAD F 1 312 302 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . N 3 21.898 25.985 59.742 1 37.08 ? PA NAD 307 D 1 HETATM 2 O O1A NAD . . . N 3 21.605 26.37 58.324 1 34.17 ? O1A NAD 307 D 1 HETATM 3 O O2A NAD . . . N 3 20.912 26.381 60.769 1 35.69 ? O2A NAD 307 D 1 HETATM 4 O O5B NAD . . . N 3 23.288 26.692 60.14 1 35.88 ? O5B NAD 307 D 1 HETATM 5 C C5B NAD . . . N 3 24.354 26.839 59.228 1 34.53 ? C5B NAD 307 D 1 HETATM 6 C C4B NAD . . . N 3 25.403 27.763 59.853 1 34.07 ? C4B NAD 307 D 1 HETATM 7 O O4B NAD . . . N 3 26.679 27.664 59.227 1 33.12 ? O4B NAD 307 D 1 HETATM 8 C C3B NAD . . . N 3 24.997 29.231 59.794 1 33.72 ? C3B NAD 307 D 1 HETATM 9 O O3B NAD . . . N 3 24.6 29.671 61.07 1 35.74 ? O3B NAD 307 D 1 HETATM 10 C C2B NAD . . . N 3 26.262 29.931 59.33 1 34.46 ? C2B NAD 307 D 1 HETATM 11 O O2B NAD . . . N 3 26.617 31.111 60.021 1 31.11 ? O2B NAD 307 D 1 HETATM 12 C C1B NAD . . . N 3 27.325 28.862 59.541 1 34.36 ? C1B NAD 307 D 1 HETATM 13 N N9A NAD . . . N 3 28.481 29.224 58.726 1 34.47 ? N9A NAD 307 D 1 HETATM 14 C C8A NAD . . . N 3 28.629 29.177 57.365 1 34.97 ? C8A NAD 307 D 1 HETATM 15 N N7A NAD . . . N 3 29.851 29.687 57.073 1 36.08 ? N7A NAD 307 D 1 HETATM 16 C C5A NAD . . . N 3 30.475 30.04 58.222 1 34.13 ? C5A NAD 307 D 1 HETATM 17 C C6A NAD . . . N 3 31.709 30.59 58.493 1 34.23 ? C6A NAD 307 D 1 HETATM 18 N N6A NAD . . . N 3 32.443 31.11 57.51 1 37.07 ? N6A NAD 307 D 1 HETATM 19 N N1A NAD . . . N 3 32.044 30.868 59.803 1 35.43 ? N1A NAD 307 D 1 HETATM 20 C C2A NAD . . . N 3 31.171 30.605 60.844 1 35.72 ? C2A NAD 307 D 1 HETATM 21 N N3A NAD . . . N 3 29.937 30.052 60.559 1 34.4 ? N3A NAD 307 D 1 HETATM 22 C C4A NAD . . . N 3 29.608 29.772 59.27 1 35.11 ? C4A NAD 307 D 1 HETATM 23 O O3 NAD . . . N 3 22.263 24.409 59.798 1 37.26 ? O3 NAD 307 D 1 HETATM 24 P PN NAD . . . N 3 21.748 23.355 60.886 1 35.95 ? PN NAD 307 D 1 HETATM 25 O O1N NAD . . . N 3 20.903 22.474 60.047 1 37.02 ? O1N NAD 307 D 1 HETATM 26 O O2N NAD . . . N 3 21.266 24.073 62.095 1 40.37 ? O2N NAD 307 D 1 HETATM 27 O O5D NAD . . . N 3 22.993 22.494 61.453 1 36.75 ? O5D NAD 307 D 1 HETATM 28 C C5D NAD . . . N 3 24.227 23.031 61.886 1 33.81 ? C5D NAD 307 D 1 HETATM 29 C C4D NAD . . . N 3 25.312 21.946 61.843 1 32.92 ? C4D NAD 307 D 1 HETATM 30 O O4D NAD . . . N 3 24.774 20.656 62.114 1 32.8 ? O4D NAD 307 D 1 HETATM 31 C C3D NAD . . . N 3 25.975 21.856 60.466 1 32.52 ? C3D NAD 307 D 1 HETATM 32 O O3D NAD . . . N 3 27.357 21.648 60.552 1 31.45 ? O3D NAD 307 D 1 HETATM 33 C C2D NAD . . . N 3 25.331 20.649 59.834 1 31.85 ? C2D NAD 307 D 1 HETATM 34 O O2D NAD . . . N 3 26.137 20.033 58.877 1 28.85 ? O2D NAD 307 D 1 HETATM 35 C C1D NAD . . . N 3 25.057 19.764 61.05 1 33.69 ? C1D NAD 307 D 1 HETATM 36 N N1N NAD . . . N 3 23.958 18.806 60.762 1 34.22 ? N1N NAD 307 D 1 HETATM 37 C C2N NAD . . . N 3 22.722 19.235 60.346 1 33.62 ? C2N NAD 307 D 1 HETATM 38 C C3N NAD . . . N 3 21.71 18.307 60.081 1 34.22 ? C3N NAD 307 D 1 HETATM 39 C C7N NAD . . . N 3 20.362 18.793 59.63 1 33.04 ? C7N NAD 307 D 1 HETATM 40 O O7N NAD . . . N 3 19.381 17.867 59.283 1 31.06 ? O7N NAD 307 D 1 HETATM 41 N N7N NAD . . . N 3 20.111 20.094 59.537 1 34.23 ? N7N NAD 307 D 1 HETATM 42 C C4N NAD . . . N 3 21.962 16.93 60.218 1 34.01 ? C4N NAD 307 D 1 HETATM 43 C C5N NAD . . . N 3 23.225 16.509 60.631 1 33.12 ? C5N NAD 307 D 1 HETATM 44 C C6N NAD . . . N 3 24.21 17.464 60.9 1 34.37 ? C6N NAD 307 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #