data_2B35
#
_model_server_result.job_id            5BAlCHh97OHfNtl9IR1gZQ 
_model_server_result.datetime_utc      '2024-11-21 23:42:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":312}' 
#
_entry.id    2B35 
#
_exptl.entry_id    2B35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.69 
_cell.angle_gamma         90 
_cell.entry_id            2B35 
_cell.length_a            99.955 
_cell.length_b            81.827 
_cell.length_c            188.656 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J 1 1,2 
C,D,E,F,K,L,M,N,O,P,Q,R 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     2B35 
_atom_sites.fract_transf_matrix[1][1]    0.01001 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 TCL A 1 300 300 TCL TCL . 
H 3 NAD A 1 301 301 NAD NAD . 
I 2 TCL B 1 302 302 TCL TCL . 
J 3 NAD B 1 303 303 NAD NAD . 
K 2 TCL C 1 304 304 TCL TCL . 
L 3 NAD C 1 305 305 NAD NAD . 
M 2 TCL D 1 306 306 TCL TCL . 
N 3 NAD D 1 307 307 NAD NAD . 
O 2 TCL E 1 309 309 TCL TCL . 
P 3 NAD E 1 310 310 NAD NAD . 
Q 2 TCL F 1 311 311 TCL TCL . 
R 3 NAD F 1 312 302 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . R 3 24.1 -23.677 51.854 1 36.24 ? PA NAD 312 F 1 
HETATM 2 O O1A NAD . . . R 3 22.774 -24.137 52.351 1 33.14 ? O1A NAD 312 F 1 
HETATM 3 O O2A NAD . . . R 3 24.42 -24.056 50.454 1 36 ? O2A NAD 312 F 1 
HETATM 4 O O5B NAD . . . R 3 25.328 -24.156 52.748 1 34.35 ? O5B NAD 312 F 1 
HETATM 5 C C5B NAD . . . R 3 25.147 -24.447 54.104 1 35.36 ? C5B NAD 312 F 1 
HETATM 6 C C4B NAD . . . R 3 25.963 -25.705 54.278 1 34.69 ? C4B NAD 312 F 1 
HETATM 7 O O4B NAD . . . R 3 26.188 -25.929 55.632 1 32.07 ? O4B NAD 312 F 1 
HETATM 8 C C3B NAD . . . R 3 25.246 -26.936 53.726 1 35.08 ? C3B NAD 312 F 1 
HETATM 9 O O3B NAD . . . R 3 25.897 -27.393 52.56 1 34.84 ? O3B NAD 312 F 1 
HETATM 10 C C2B NAD . . . R 3 25.251 -27.931 54.884 1 33.23 ? C2B NAD 312 F 1 
HETATM 11 O O2B NAD . . . R 3 25.521 -29.272 54.506 1 33.96 ? O2B NAD 312 F 1 
HETATM 12 C C1B NAD . . . R 3 26.309 -27.313 55.781 1 32.25 ? C1B NAD 312 F 1 
HETATM 13 N N9A NAD . . . R 3 26.123 -27.629 57.191 1 30.52 ? N9A NAD 312 F 1 
HETATM 14 C C8A NAD . . . R 3 25.072 -27.281 57.969 1 31.42 ? C8A NAD 312 F 1 
HETATM 15 N N7A NAD . . . R 3 25.303 -27.764 59.204 1 32.91 ? N7A NAD 312 F 1 
HETATM 16 C C5A NAD . . . R 3 26.495 -28.407 59.203 1 32.16 ? C5A NAD 312 F 1 
HETATM 17 C C6A NAD . . . R 3 27.205 -29.083 60.186 1 32.24 ? C6A NAD 312 F 1 
HETATM 18 N N6A NAD . . . R 3 26.556 -29.565 61.256 1 31.4 ? N6A NAD 312 F 1 
HETATM 19 N N1A NAD . . . R 3 28.418 -29.639 59.84 1 28.88 ? N1A NAD 312 F 1 
HETATM 20 C C2A NAD . . . R 3 28.93 -29.544 58.572 1 29.9 ? C2A NAD 312 F 1 
HETATM 21 N N3A NAD . . . R 3 28.212 -28.869 57.612 1 30.47 ? N3A NAD 312 F 1 
HETATM 22 C C4A NAD . . . R 3 27.016 -28.323 57.932 1 30.84 ? C4A NAD 312 F 1 
HETATM 23 O O3 NAD . . . R 3 24.116 -22.079 52.063 1 38.43 ? O3 NAD 312 F 1 
HETATM 24 P PN NAD . . . R 3 24.78 -21.079 51.002 1 36.01 ? PN NAD 312 F 1 
HETATM 25 O O1N NAD . . . R 3 23.682 -20.233 50.495 1 37.64 ? O1N NAD 312 F 1 
HETATM 26 O O2N NAD . . . R 3 25.653 -21.807 50.073 1 38.34 ? O2N NAD 312 F 1 
HETATM 27 O O5D NAD . . . R 3 25.726 -20.388 52.054 1 38.49 ? O5D NAD 312 F 1 
HETATM 28 C C5D NAD . . . R 3 26.914 -21.032 52.476 1 37.39 ? C5D NAD 312 F 1 
HETATM 29 C C4D NAD . . . R 3 27.619 -20.029 53.369 1 38.33 ? C4D NAD 312 F 1 
HETATM 30 O O4D NAD . . . R 3 27.623 -18.761 52.709 1 39.48 ? O4D NAD 312 F 1 
HETATM 31 C C3D NAD . . . R 3 26.896 -19.841 54.709 1 38.13 ? C3D NAD 312 F 1 
HETATM 32 O O3D NAD . . . R 3 27.813 -19.596 55.76 1 35.41 ? O3D NAD 312 F 1 
HETATM 33 C C2D NAD . . . R 3 26.083 -18.581 54.499 1 38.8 ? C2D NAD 312 F 1 
HETATM 34 O O2D NAD . . . R 3 25.825 -17.913 55.727 1 36.11 ? O2D NAD 312 F 1 
HETATM 35 C C1D NAD . . . R 3 27.004 -17.806 53.54 1 39.14 ? C1D NAD 312 F 1 
HETATM 36 N N1N NAD . . . R 3 26.306 -16.781 52.749 1 41.11 ? N1N NAD 312 F 1 
HETATM 37 C C2N NAD . . . R 3 25.174 -17.028 52.023 1 40.91 ? C2N NAD 312 F 1 
HETATM 38 C C3N NAD . . . R 3 24.572 -15.976 51.317 1 42.37 ? C3N NAD 312 F 1 
HETATM 39 C C7N NAD . . . R 3 23.315 -16.181 50.514 1 41.4 ? C7N NAD 312 F 1 
HETATM 40 O O7N NAD . . . R 3 22.611 -15.04 50.101 1 42 ? O7N NAD 312 F 1 
HETATM 41 N N7N NAD . . . R 3 22.883 -17.402 50.2 1 40.84 ? N7N NAD 312 F 1 
HETATM 42 C C4N NAD . . . R 3 25.128 -14.685 51.357 1 43.52 ? C4N NAD 312 F 1 
HETATM 43 C C5N NAD . . . R 3 26.276 -14.451 52.104 1 43.73 ? C5N NAD 312 F 1 
HETATM 44 C C6N NAD . . . R 3 26.846 -15.519 52.796 1 44.16 ? C6N NAD 312 F 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#