data_2B36 # _model_server_result.job_id JOjFG2GJb5_w8w8DZYLaoQ _model_server_result.datetime_utc '2024-12-02 23:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":304}' # _entry.id 2B36 # _exptl.entry_id 2B36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.69 _cell.angle_gamma 90 _cell.entry_id 2B36 _cell.length_a 99.955 _cell.length_b 81.827 _cell.length_c 188.656 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1,2 C,D,E,F,K,L,M,N,O,P,Q,R 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 275 n n PA O2A NAD sing 276 n n PA O5B NAD sing 277 n n PA O3 NAD sing 278 n n O2A HOA2 NAD sing 279 n n O5B C5B NAD sing 280 n n C5B C4B NAD sing 281 n n C5B H51A NAD sing 282 n n C5B H52A NAD sing 283 n n C4B O4B NAD sing 284 n n C4B C3B NAD sing 285 n n C4B H4B NAD sing 286 n n O4B C1B NAD sing 287 n n C3B O3B NAD sing 288 n n C3B C2B NAD sing 289 n n C3B H3B NAD sing 290 n n O3B HO3A NAD sing 291 n n C2B O2B NAD sing 292 n n C2B C1B NAD sing 293 n n C2B H2B NAD sing 294 n n O2B HO2A NAD sing 295 n n C1B N9A NAD sing 296 n n C1B H1B NAD sing 297 n n N9A C8A NAD sing 298 n y N9A C4A NAD sing 299 n y C8A N7A NAD doub 300 n y C8A H8A NAD sing 301 n n N7A C5A NAD sing 302 n y C5A C6A NAD sing 303 n y C5A C4A NAD doub 304 n y C6A N6A NAD sing 305 n n C6A N1A NAD doub 306 n y N6A H61A NAD sing 307 n n N6A H62A NAD sing 308 n n N1A C2A NAD sing 309 n y C2A N3A NAD doub 310 n y C2A H2A NAD sing 311 n n N3A C4A NAD sing 312 n y O3 PN NAD sing 313 n n PN O1N NAD doub 314 n n PN O2N NAD sing 315 n n PN O5D NAD sing 316 n n O5D C5D NAD sing 317 n n C5D C4D NAD sing 318 n n C5D H51N NAD sing 319 n n C5D H52N NAD sing 320 n n C4D O4D NAD sing 321 n n C4D C3D NAD sing 322 n n C4D H4D NAD sing 323 n n O4D C1D NAD sing 324 n n C3D O3D NAD sing 325 n n C3D C2D NAD sing 326 n n C3D H3D NAD sing 327 n n O3D HO3N NAD sing 328 n n C2D O2D NAD sing 329 n n C2D C1D NAD sing 330 n n C2D H2D NAD sing 331 n n O2D HO2N NAD sing 332 n n C1D N1N NAD sing 333 n n C1D H1D NAD sing 334 n n N1N C2N NAD sing 335 n y N1N C6N NAD doub 336 n y C2N C3N NAD doub 337 n y C2N H2N NAD sing 338 n n C3N C7N NAD sing 339 n n C3N C4N NAD sing 340 n y C7N O7N NAD doub 341 n n C7N N7N NAD sing 342 n n N7N H71N NAD sing 343 n n N7N H72N NAD sing 344 n n C4N C5N NAD doub 345 n y C4N H4N NAD sing 346 n n C5N C6N NAD sing 347 n y C5N H5N NAD sing 348 n n C6N H6N NAD sing 349 n n # _atom_sites.entry_id 2B36 _atom_sites.fract_transf_matrix[1][1] 0.010005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000997 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 5PP A 1 290 290 5PP 5PP . H 3 NAD A 1 301 301 NAD NAD . I 2 5PP B 1 291 291 5PP 5PP . J 3 NAD B 1 302 302 NAD NAD . K 2 5PP C 1 292 292 5PP 5PP . L 3 NAD C 1 303 303 NAD NAD . M 2 5PP D 1 293 293 5PP 5PP . N 3 NAD D 1 304 304 NAD NAD . O 2 5PP E 1 294 294 5PP 5PP . P 3 NAD E 1 305 305 NAD NAD . Q 2 5PP F 1 295 295 5PP 5PP . R 3 NAD F 1 306 306 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . N 3 21.686 26.126 59.986 1 43.18 ? PA NAD 304 D 1 HETATM 2 O O1A NAD . . . N 3 21.452 25.856 58.544 1 42.03 ? O1A NAD 304 D 1 HETATM 3 O O2A NAD . . . N 3 20.513 26.426 60.837 1 38.3 ? O2A NAD 304 D 1 HETATM 4 O O5B NAD . . . N 3 22.879 27.155 60.103 1 41.85 ? O5B NAD 304 D 1 HETATM 5 C C5B NAD . . . N 3 24.087 26.932 59.417 1 42.23 ? C5B NAD 304 D 1 HETATM 6 C C4B NAD . . . N 3 25.094 27.802 60.156 1 42.38 ? C4B NAD 304 D 1 HETATM 7 O O4B NAD . . . N 3 26.419 27.657 59.678 1 41.95 ? O4B NAD 304 D 1 HETATM 8 C C3B NAD . . . N 3 24.751 29.291 60.02 1 41.9 ? C3B NAD 304 D 1 HETATM 9 O O3B NAD . . . N 3 24.672 29.856 61.299 1 46.13 ? O3B NAD 304 D 1 HETATM 10 C C2B NAD . . . N 3 25.912 29.884 59.287 1 39.69 ? C2B NAD 304 D 1 HETATM 11 O O2B NAD . . . N 3 26.113 31.221 59.627 1 36.41 ? O2B NAD 304 D 1 HETATM 12 C C1B NAD . . . N 3 27.011 28.943 59.773 1 39.27 ? C1B NAD 304 D 1 HETATM 13 N N9A NAD . . . N 3 28.22 29.158 58.991 1 36.27 ? N9A NAD 304 D 1 HETATM 14 C C8A NAD . . . N 3 28.421 28.868 57.683 1 36.71 ? C8A NAD 304 D 1 HETATM 15 N N7A NAD . . . N 3 29.656 29.284 57.352 1 38.24 ? N7A NAD 304 D 1 HETATM 16 C C5A NAD . . . N 3 30.222 29.827 58.431 1 38.72 ? C5A NAD 304 D 1 HETATM 17 C C6A NAD . . . N 3 31.463 30.391 58.638 1 38.34 ? C6A NAD 304 D 1 HETATM 18 N N6A NAD . . . N 3 32.354 30.282 57.668 1 35.05 ? N6A NAD 304 D 1 HETATM 19 N N1A NAD . . . N 3 31.788 30.886 59.901 1 36.21 ? N1A NAD 304 D 1 HETATM 20 C C2A NAD . . . N 3 30.882 30.811 60.921 1 35.46 ? C2A NAD 304 D 1 HETATM 21 N N3A NAD . . . N 3 29.646 30.238 60.7 1 36.02 ? N3A NAD 304 D 1 HETATM 22 C C4A NAD . . . N 3 29.326 29.76 59.475 1 36.83 ? C4A NAD 304 D 1 HETATM 23 O O3 NAD . . . N 3 22.457 24.914 60.655 1 45.03 ? O3 NAD 304 D 1 HETATM 24 P PN NAD . . . N 3 21.805 23.488 60.991 1 46 ? PN NAD 304 D 1 HETATM 25 O O1N NAD . . . N 3 20.898 23.089 59.884 1 45.84 ? O1N NAD 304 D 1 HETATM 26 O O2N NAD . . . N 3 21.352 23.524 62.403 1 44.2 ? O2N NAD 304 D 1 HETATM 27 O O5D NAD . . . N 3 23.194 22.683 60.912 1 41.76 ? O5D NAD 304 D 1 HETATM 28 C C5D NAD . . . N 3 24.247 23.021 61.792 1 36.41 ? C5D NAD 304 D 1 HETATM 29 C C4D NAD . . . N 3 25.263 21.893 61.814 1 33.01 ? C4D NAD 304 D 1 HETATM 30 O O4D NAD . . . N 3 24.603 20.685 62.158 1 31.43 ? O4D NAD 304 D 1 HETATM 31 C C3D NAD . . . N 3 25.9 21.706 60.434 1 29.56 ? C3D NAD 304 D 1 HETATM 32 O O3D NAD . . . N 3 27.268 21.478 60.526 1 26.84 ? O3D NAD 304 D 1 HETATM 33 C C2D NAD . . . N 3 25.239 20.472 59.887 1 30.58 ? C2D NAD 304 D 1 HETATM 34 O O2D NAD . . . N 3 26.087 19.769 59.007 1 30.92 ? O2D NAD 304 D 1 HETATM 35 C C1D NAD . . . N 3 24.851 19.701 61.156 1 30.05 ? C1D NAD 304 D 1 HETATM 36 N N1N NAD . . . N 3 23.699 18.827 60.838 1 28.68 ? N1N NAD 304 D 1 HETATM 37 C C2N NAD . . . N 3 22.513 19.349 60.407 1 30.25 ? C2N NAD 304 D 1 HETATM 38 C C3N NAD . . . N 3 21.441 18.502 60.048 1 30.34 ? C3N NAD 304 D 1 HETATM 39 C C7N NAD . . . N 3 20.152 19.133 59.568 1 28.03 ? C7N NAD 304 D 1 HETATM 40 O O7N NAD . . . N 3 19.067 18.356 59.183 1 22.1 ? O7N NAD 304 D 1 HETATM 41 N N7N NAD . . . N 3 20.083 20.457 59.525 1 29.02 ? N7N NAD 304 D 1 HETATM 42 C C4N NAD . . . N 3 21.575 17.11 60.133 1 28.43 ? C4N NAD 304 D 1 HETATM 43 C C5N NAD . . . N 3 22.8 16.591 60.542 1 29.29 ? C5N NAD 304 D 1 HETATM 44 C C6N NAD . . . N 3 23.839 17.465 60.903 1 29.59 ? C6N NAD 304 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 44 #