data_2B36
#
_model_server_result.job_id            Nz1n7bIZNJdTofK-psuzjA 
_model_server_result.datetime_utc      '2024-12-02 23:31:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b36 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":305}' 
#
_entry.id    2B36 
#
_exptl.entry_id    2B36 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.69 
_cell.angle_gamma         90 
_cell.entry_id            2B36 
_cell.length_a            99.955 
_cell.length_b            81.827 
_cell.length_c            188.656 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B36 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J 1 1,2 
C,D,E,F,K,L,M,N,O,P,Q,R 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 275 n n 
PA O2A NAD sing 276 n n 
PA O5B NAD sing 277 n n 
PA O3 NAD sing 278 n n 
O2A HOA2 NAD sing 279 n n 
O5B C5B NAD sing 280 n n 
C5B C4B NAD sing 281 n n 
C5B H51A NAD sing 282 n n 
C5B H52A NAD sing 283 n n 
C4B O4B NAD sing 284 n n 
C4B C3B NAD sing 285 n n 
C4B H4B NAD sing 286 n n 
O4B C1B NAD sing 287 n n 
C3B O3B NAD sing 288 n n 
C3B C2B NAD sing 289 n n 
C3B H3B NAD sing 290 n n 
O3B HO3A NAD sing 291 n n 
C2B O2B NAD sing 292 n n 
C2B C1B NAD sing 293 n n 
C2B H2B NAD sing 294 n n 
O2B HO2A NAD sing 295 n n 
C1B N9A NAD sing 296 n n 
C1B H1B NAD sing 297 n n 
N9A C8A NAD sing 298 n y 
N9A C4A NAD sing 299 n y 
C8A N7A NAD doub 300 n y 
C8A H8A NAD sing 301 n n 
N7A C5A NAD sing 302 n y 
C5A C6A NAD sing 303 n y 
C5A C4A NAD doub 304 n y 
C6A N6A NAD sing 305 n n 
C6A N1A NAD doub 306 n y 
N6A H61A NAD sing 307 n n 
N6A H62A NAD sing 308 n n 
N1A C2A NAD sing 309 n y 
C2A N3A NAD doub 310 n y 
C2A H2A NAD sing 311 n n 
N3A C4A NAD sing 312 n y 
O3 PN NAD sing 313 n n 
PN O1N NAD doub 314 n n 
PN O2N NAD sing 315 n n 
PN O5D NAD sing 316 n n 
O5D C5D NAD sing 317 n n 
C5D C4D NAD sing 318 n n 
C5D H51N NAD sing 319 n n 
C5D H52N NAD sing 320 n n 
C4D O4D NAD sing 321 n n 
C4D C3D NAD sing 322 n n 
C4D H4D NAD sing 323 n n 
O4D C1D NAD sing 324 n n 
C3D O3D NAD sing 325 n n 
C3D C2D NAD sing 326 n n 
C3D H3D NAD sing 327 n n 
O3D HO3N NAD sing 328 n n 
C2D O2D NAD sing 329 n n 
C2D C1D NAD sing 330 n n 
C2D H2D NAD sing 331 n n 
O2D HO2N NAD sing 332 n n 
C1D N1N NAD sing 333 n n 
C1D H1D NAD sing 334 n n 
N1N C2N NAD sing 335 n y 
N1N C6N NAD doub 336 n y 
C2N C3N NAD doub 337 n y 
C2N H2N NAD sing 338 n n 
C3N C7N NAD sing 339 n n 
C3N C4N NAD sing 340 n y 
C7N O7N NAD doub 341 n n 
C7N N7N NAD sing 342 n n 
N7N H71N NAD sing 343 n n 
N7N H72N NAD sing 344 n n 
C4N C5N NAD doub 345 n y 
C4N H4N NAD sing 346 n n 
C5N C6N NAD sing 347 n y 
C5N H5N NAD sing 348 n n 
C6N H6N NAD sing 349 n n 
#
_atom_sites.entry_id                     2B36 
_atom_sites.fract_transf_matrix[1][1]    0.010005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000997 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 5PP A 1 290 290 5PP 5PP . 
H 3 NAD A 1 301 301 NAD NAD . 
I 2 5PP B 1 291 291 5PP 5PP . 
J 3 NAD B 1 302 302 NAD NAD . 
K 2 5PP C 1 292 292 5PP 5PP . 
L 3 NAD C 1 303 303 NAD NAD . 
M 2 5PP D 1 293 293 5PP 5PP . 
N 3 NAD D 1 304 304 NAD NAD . 
O 2 5PP E 1 294 294 5PP 5PP . 
P 3 NAD E 1 305 305 NAD NAD . 
Q 2 5PP F 1 295 295 5PP 5PP . 
R 3 NAD F 1 306 306 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . P 3 31.359 -8.41 87.798 1 25.68 ? PA NAD 305 E 1 
HETATM 2 O O1A NAD . . . P 3 32.463 -9.241 87.265 1 24.06 ? O1A NAD 305 E 1 
HETATM 3 O O2A NAD . . . P 3 31.464 -7.953 89.206 1 25.83 ? O2A NAD 305 E 1 
HETATM 4 O O5B NAD . . . P 3 29.924 -8.953 87.391 1 24.84 ? O5B NAD 305 E 1 
HETATM 5 C C5B NAD . . . P 3 29.747 -9.955 86.429 1 27.7 ? C5B NAD 305 E 1 
HETATM 6 C C4B NAD . . . P 3 28.366 -10.509 86.731 1 29.54 ? C4B NAD 305 E 1 
HETATM 7 O O4B NAD . . . P 3 27.96 -11.579 85.863 1 29.69 ? O4B NAD 305 E 1 
HETATM 8 C C3B NAD . . . P 3 28.302 -11.038 88.179 1 27.13 ? C3B NAD 305 E 1 
HETATM 9 O O3B NAD . . . P 3 27.441 -10.24 88.97 1 24.16 ? O3B NAD 305 E 1 
HETATM 10 C C2B NAD . . . P 3 27.785 -12.445 88 1 26.95 ? C2B NAD 305 E 1 
HETATM 11 O O2B NAD . . . P 3 26.925 -12.828 89.034 1 28.85 ? O2B NAD 305 E 1 
HETATM 12 C C1B NAD . . . P 3 27.066 -12.307 86.68 1 26.17 ? C1B NAD 305 E 1 
HETATM 13 N N9A NAD . . . P 3 26.632 -13.591 86.144 1 24.51 ? N9A NAD 305 E 1 
HETATM 14 C C8A NAD . . . P 3 27.37 -14.656 85.695 1 23.02 ? C8A NAD 305 E 1 
HETATM 15 N N7A NAD . . . P 3 26.481 -15.604 85.29 1 24.29 ? N7A NAD 305 E 1 
HETATM 16 C C5A NAD . . . P 3 25.207 -15.147 85.481 1 22.95 ? C5A NAD 305 E 1 
HETATM 17 C C6A NAD . . . P 3 23.924 -15.678 85.269 1 23.2 ? C6A NAD 305 E 1 
HETATM 18 N N6A NAD . . . P 3 23.741 -16.841 84.637 1 24.86 ? N6A NAD 305 E 1 
HETATM 19 N N1A NAD . . . P 3 22.808 -14.919 85.604 1 23.39 ? N1A NAD 305 E 1 
HETATM 20 C C2A NAD . . . P 3 22.92 -13.646 86.136 1 22.1 ? C2A NAD 305 E 1 
HETATM 21 N N3A NAD . . . P 3 24.182 -13.127 86.336 1 22.66 ? N3A NAD 305 E 1 
HETATM 22 C C4A NAD . . . P 3 25.299 -13.873 86.02 1 23.6 ? C4A NAD 305 E 1 
HETATM 23 O O3 NAD . . . P 3 31.403 -7.005 87.028 1 27.45 ? O3 NAD 305 E 1 
HETATM 24 P PN NAD . . . P 3 32.131 -6.681 85.616 1 24.52 ? PN NAD 305 E 1 
HETATM 25 O O1N NAD . . . P 3 33.49 -7.283 85.581 1 26.86 ? O1N NAD 305 E 1 
HETATM 26 O O2N NAD . . . P 3 31.978 -5.217 85.515 1 25.67 ? O2N NAD 305 E 1 
HETATM 27 O O5D NAD . . . P 3 31.142 -7.312 84.544 1 20.26 ? O5D NAD 305 E 1 
HETATM 28 C C5D NAD . . . P 3 29.867 -6.759 84.34 1 21.73 ? C5D NAD 305 E 1 
HETATM 29 C C4D NAD . . . P 3 29.718 -6.258 82.92 1 22.11 ? C4D NAD 305 E 1 
HETATM 30 O O4D NAD . . . P 3 30.639 -5.201 82.631 1 23.07 ? O4D NAD 305 E 1 
HETATM 31 C C3D NAD . . . P 3 30.033 -7.393 81.953 1 23.23 ? C3D NAD 305 E 1 
HETATM 32 O O3D NAD . . . P 3 29.153 -7.404 80.873 1 22.36 ? O3D NAD 305 E 1 
HETATM 33 C C2D NAD . . . P 3 31.394 -7.039 81.446 1 23.41 ? C2D NAD 305 E 1 
HETATM 34 O O2D NAD . . . P 3 31.573 -7.695 80.215 1 27.01 ? O2D NAD 305 E 1 
HETATM 35 C C1D NAD . . . P 3 31.29 -5.521 81.423 1 21.13 ? C1D NAD 305 E 1 
HETATM 36 N N1N NAD . . . P 3 32.596 -4.934 81.286 1 21.11 ? N1N NAD 305 E 1 
HETATM 37 C C2N NAD . . . P 3 33.409 -4.908 82.374 1 25.37 ? C2N NAD 305 E 1 
HETATM 38 C C3N NAD . . . P 3 34.717 -4.398 82.267 1 24.79 ? C3N NAD 305 E 1 
HETATM 39 C C7N NAD . . . P 3 35.707 -4.958 83.247 1 23.77 ? C7N NAD 305 E 1 
HETATM 40 O O7N NAD . . . P 3 37.048 -5.098 82.799 1 23.45 ? O7N NAD 305 E 1 
HETATM 41 N N7N NAD . . . P 3 35.243 -5.325 84.472 1 20.71 ? N7N NAD 305 E 1 
HETATM 42 C C4N NAD . . . P 3 35.18 -3.931 81.016 1 21.42 ? C4N NAD 305 E 1 
HETATM 43 C C5N NAD . . . P 3 34.335 -3.992 79.895 1 19.69 ? C5N NAD 305 E 1 
HETATM 44 C C6N NAD . . . P 3 33.032 -4.491 80.053 1 20.6 ? C6N NAD 305 E 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#