data_2B37 # _model_server_result.job_id M_4DDcSBFi2yqtIitLmssQ _model_server_result.datetime_utc '2024-11-29 21:05:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":404}' # _entry.id 2B37 # _exptl.entry_id 2B37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B37 _cell.length_a 82.341 _cell.length_b 100.293 _cell.length_c 379.275 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N,O,P,S,T 1 1 C,D,I,J,K,L,Q,R 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 82.341 0 189.6375 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 286 n n PA O2A NAD sing 287 n n PA O5B NAD sing 288 n n PA O3 NAD sing 289 n n O2A HOA2 NAD sing 290 n n O5B C5B NAD sing 291 n n C5B C4B NAD sing 292 n n C5B H51A NAD sing 293 n n C5B H52A NAD sing 294 n n C4B O4B NAD sing 295 n n C4B C3B NAD sing 296 n n C4B H4B NAD sing 297 n n O4B C1B NAD sing 298 n n C3B O3B NAD sing 299 n n C3B C2B NAD sing 300 n n C3B H3B NAD sing 301 n n O3B HO3A NAD sing 302 n n C2B O2B NAD sing 303 n n C2B C1B NAD sing 304 n n C2B H2B NAD sing 305 n n O2B HO2A NAD sing 306 n n C1B N9A NAD sing 307 n n C1B H1B NAD sing 308 n n N9A C8A NAD sing 309 n y N9A C4A NAD sing 310 n y C8A N7A NAD doub 311 n y C8A H8A NAD sing 312 n n N7A C5A NAD sing 313 n y C5A C6A NAD sing 314 n y C5A C4A NAD doub 315 n y C6A N6A NAD sing 316 n n C6A N1A NAD doub 317 n y N6A H61A NAD sing 318 n n N6A H62A NAD sing 319 n n N1A C2A NAD sing 320 n y C2A N3A NAD doub 321 n y C2A H2A NAD sing 322 n n N3A C4A NAD sing 323 n y O3 PN NAD sing 324 n n PN O1N NAD doub 325 n n PN O2N NAD sing 326 n n PN O5D NAD sing 327 n n O5D C5D NAD sing 328 n n C5D C4D NAD sing 329 n n C5D H51N NAD sing 330 n n C5D H52N NAD sing 331 n n C4D O4D NAD sing 332 n n C4D C3D NAD sing 333 n n C4D H4D NAD sing 334 n n O4D C1D NAD sing 335 n n C3D O3D NAD sing 336 n n C3D C2D NAD sing 337 n n C3D H3D NAD sing 338 n n O3D HO3N NAD sing 339 n n C2D O2D NAD sing 340 n n C2D C1D NAD sing 341 n n C2D H2D NAD sing 342 n n O2D HO2N NAD sing 343 n n C1D N1N NAD sing 344 n n C1D H1D NAD sing 345 n n N1N C2N NAD sing 346 n y N1N C6N NAD doub 347 n y C2N C3N NAD doub 348 n y C2N H2N NAD sing 349 n n C3N C7N NAD sing 350 n n C3N C4N NAD sing 351 n y C7N O7N NAD doub 352 n n C7N N7N NAD sing 353 n n N7N H71N NAD sing 354 n n N7N H72N NAD sing 355 n n C4N C5N NAD doub 356 n y C4N H4N NAD sing 357 n n C5N C6N NAD sing 358 n y C5N H5N NAD sing 359 n n C6N H6N NAD sing 360 n n # _atom_sites.entry_id 2B37 _atom_sites.fract_transf_matrix[1][1] 0.012145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAD A 1 401 401 NAD NAD . H 2 NAD B 1 402 402 NAD NAD . I 3 8PS C 1 300 300 8PS 8PS . J 2 NAD C 1 403 403 NAD NAD . K 3 8PS D 1 301 301 8PS 8PS . L 2 NAD D 1 404 404 NAD NAD . M 2 NAD E 1 405 405 NAD NAD . N 2 NAD F 1 406 406 NAD NAD . O 4 HOH A 1 402 2 HOH HOH . O 4 HOH A 2 403 4 HOH HOH . O 4 HOH A 3 404 15 HOH HOH . O 4 HOH A 4 405 16 HOH HOH . O 4 HOH A 5 406 17 HOH HOH . O 4 HOH A 6 407 26 HOH HOH . O 4 HOH A 7 408 28 HOH HOH . P 4 HOH B 1 403 13 HOH HOH . P 4 HOH B 2 404 31 HOH HOH . Q 4 HOH C 1 404 1 HOH HOH . Q 4 HOH C 2 405 5 HOH HOH . Q 4 HOH C 3 406 6 HOH HOH . Q 4 HOH C 4 407 10 HOH HOH . Q 4 HOH C 5 408 23 HOH HOH . Q 4 HOH C 6 409 24 HOH HOH . Q 4 HOH C 7 410 30 HOH HOH . R 4 HOH D 1 405 7 HOH HOH . R 4 HOH D 2 406 9 HOH HOH . R 4 HOH D 3 407 11 HOH HOH . R 4 HOH D 4 408 14 HOH HOH . R 4 HOH D 5 409 22 HOH HOH . R 4 HOH D 6 410 25 HOH HOH . S 4 HOH E 1 406 8 HOH HOH . S 4 HOH E 2 407 18 HOH HOH . S 4 HOH E 3 408 27 HOH HOH . T 4 HOH F 1 407 12 HOH HOH . T 4 HOH F 2 408 19 HOH HOH . T 4 HOH F 3 409 20 HOH HOH . T 4 HOH F 4 410 21 HOH HOH . T 4 HOH F 5 411 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . L 2 53.367 -11.003 110.99 1 32.32 ? PA NAD 404 D 1 HETATM 2 O O1A NAD . . . L 2 54.108 -12.127 110.344 1 31.52 ? O1A NAD 404 D 1 HETATM 3 O O2A NAD . . . L 2 53.802 -10.762 112.395 1 30.39 ? O2A NAD 404 D 1 HETATM 4 O O5B NAD . . . L 2 51.767 -11.318 110.875 1 30.36 ? O5B NAD 404 D 1 HETATM 5 C C5B NAD . . . L 2 51.218 -12.338 110.043 1 26.3 ? C5B NAD 404 D 1 HETATM 6 C C4B NAD . . . L 2 50.111 -13.052 110.793 1 23.62 ? C4B NAD 404 D 1 HETATM 7 O O4B NAD . . . L 2 49.201 -13.708 109.919 1 23.41 ? O4B NAD 404 D 1 HETATM 8 C C3B NAD . . . L 2 50.662 -14.138 111.722 1 22.72 ? C3B NAD 404 D 1 HETATM 9 O O3B NAD . . . L 2 50.141 -13.98 113.033 1 17.72 ? O3B NAD 404 D 1 HETATM 10 C C2B NAD . . . L 2 50.157 -15.407 111.117 1 20.09 ? C2B NAD 404 D 1 HETATM 11 O O2B NAD . . . L 2 50.086 -16.429 112.073 1 23.35 ? O2B NAD 404 D 1 HETATM 12 C C1B NAD . . . L 2 48.827 -14.929 110.549 1 19.05 ? C1B NAD 404 D 1 HETATM 13 N N9A NAD . . . L 2 48.237 -15.906 109.622 1 20.29 ? N9A NAD 404 D 1 HETATM 14 C C8A NAD . . . L 2 48.773 -16.36 108.433 1 16.86 ? C8A NAD 404 D 1 HETATM 15 N N7A NAD . . . L 2 47.921 -17.282 107.92 1 18.67 ? N7A NAD 404 D 1 HETATM 16 C C5A NAD . . . L 2 46.84 -17.424 108.755 1 18.22 ? C5A NAD 404 D 1 HETATM 17 C C6A NAD . . . L 2 45.689 -18.231 108.73 1 16.51 ? C6A NAD 404 D 1 HETATM 18 N N6A NAD . . . L 2 45.65 -19.328 107.966 1 17.28 ? N6A NAD 404 D 1 HETATM 19 N N1A NAD . . . L 2 44.777 -18.152 109.761 1 15.12 ? N1A NAD 404 D 1 HETATM 20 C C2A NAD . . . L 2 45 -17.297 110.799 1 17.79 ? C2A NAD 404 D 1 HETATM 21 N N3A NAD . . . L 2 46.138 -16.496 110.83 1 19.26 ? N3A NAD 404 D 1 HETATM 22 C C4A NAD . . . L 2 47.047 -16.562 109.831 1 20.63 ? C4A NAD 404 D 1 HETATM 23 O O3 NAD . . . L 2 53.572 -9.631 110.138 1 31.64 ? O3 NAD 404 D 1 HETATM 24 P PN NAD . . . L 2 52.679 -8.301 110.411 1 35.32 ? PN NAD 404 D 1 HETATM 25 O O1N NAD . . . L 2 53.321 -7.217 109.661 1 29.8 ? O1N NAD 404 D 1 HETATM 26 O O2N NAD . . . L 2 52.405 -8.168 111.901 1 31.25 ? O2N NAD 404 D 1 HETATM 27 O O5D NAD . . . L 2 51.252 -8.633 109.669 1 33.75 ? O5D NAD 404 D 1 HETATM 28 C C5D NAD . . . L 2 49.992 -8.309 110.248 1 29.63 ? C5D NAD 404 D 1 HETATM 29 C C4D NAD . . . L 2 49.078 -7.616 109.241 1 29.67 ? C4D NAD 404 D 1 HETATM 30 O O4D NAD . . . L 2 49.459 -6.259 109.046 1 31.31 ? O4D NAD 404 D 1 HETATM 31 C C3D NAD . . . L 2 49.096 -8.278 107.858 1 29.39 ? C3D NAD 404 D 1 HETATM 32 O O3D NAD . . . L 2 47.782 -8.419 107.38 1 28.92 ? O3D NAD 404 D 1 HETATM 33 C C2D NAD . . . L 2 49.868 -7.336 106.982 1 27.61 ? C2D NAD 404 D 1 HETATM 34 O O2D NAD . . . L 2 49.445 -7.432 105.638 1 27.93 ? O2D NAD 404 D 1 HETATM 35 C C1D NAD . . . L 2 49.592 -5.992 107.644 1 28.55 ? C1D NAD 404 D 1 HETATM 36 N N1N NAD . . . L 2 50.636 -4.96 107.388 1 26.5 ? N1N NAD 404 D 1 HETATM 37 C C2N NAD . . . L 2 51.966 -5.125 107.735 1 24.76 ? C2N NAD 404 D 1 HETATM 38 C C3N NAD . . . L 2 52.865 -4.081 107.456 1 27.33 ? C3N NAD 404 D 1 HETATM 39 C C7N NAD . . . L 2 54.308 -4.159 107.784 1 28.95 ? C7N NAD 404 D 1 HETATM 40 O O7N NAD . . . L 2 55.15 -3.198 107.195 1 29.69 ? O7N NAD 404 D 1 HETATM 41 N N7N NAD . . . L 2 54.771 -5.103 108.59 1 31.36 ? N7N NAD 404 D 1 HETATM 42 C C4N NAD . . . L 2 52.443 -2.917 106.825 1 26.12 ? C4N NAD 404 D 1 HETATM 43 C C5N NAD . . . L 2 51.123 -2.794 106.471 1 26.79 ? C5N NAD 404 D 1 HETATM 44 C C6N NAD . . . L 2 50.224 -3.813 106.76 1 26.18 ? C6N NAD 404 D 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #