data_2B37
#
_model_server_result.job_id            e1qVkzs04oIpWY_jg19SyA 
_model_server_result.datetime_utc      '2024-11-26 10:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b37 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":405}' 
#
_entry.id    2B37 
#
_exptl.entry_id    2B37 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2B37 
_cell.length_a            82.341 
_cell.length_b            100.293 
_cell.length_c            379.275 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B37 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N,O,P,S,T 1 1 
C,D,I,J,K,L,Q,R 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 82.341 0 189.6375 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 286 n n 
PA O2A NAD sing 287 n n 
PA O5B NAD sing 288 n n 
PA O3 NAD sing 289 n n 
O2A HOA2 NAD sing 290 n n 
O5B C5B NAD sing 291 n n 
C5B C4B NAD sing 292 n n 
C5B H51A NAD sing 293 n n 
C5B H52A NAD sing 294 n n 
C4B O4B NAD sing 295 n n 
C4B C3B NAD sing 296 n n 
C4B H4B NAD sing 297 n n 
O4B C1B NAD sing 298 n n 
C3B O3B NAD sing 299 n n 
C3B C2B NAD sing 300 n n 
C3B H3B NAD sing 301 n n 
O3B HO3A NAD sing 302 n n 
C2B O2B NAD sing 303 n n 
C2B C1B NAD sing 304 n n 
C2B H2B NAD sing 305 n n 
O2B HO2A NAD sing 306 n n 
C1B N9A NAD sing 307 n n 
C1B H1B NAD sing 308 n n 
N9A C8A NAD sing 309 n y 
N9A C4A NAD sing 310 n y 
C8A N7A NAD doub 311 n y 
C8A H8A NAD sing 312 n n 
N7A C5A NAD sing 313 n y 
C5A C6A NAD sing 314 n y 
C5A C4A NAD doub 315 n y 
C6A N6A NAD sing 316 n n 
C6A N1A NAD doub 317 n y 
N6A H61A NAD sing 318 n n 
N6A H62A NAD sing 319 n n 
N1A C2A NAD sing 320 n y 
C2A N3A NAD doub 321 n y 
C2A H2A NAD sing 322 n n 
N3A C4A NAD sing 323 n y 
O3 PN NAD sing 324 n n 
PN O1N NAD doub 325 n n 
PN O2N NAD sing 326 n n 
PN O5D NAD sing 327 n n 
O5D C5D NAD sing 328 n n 
C5D C4D NAD sing 329 n n 
C5D H51N NAD sing 330 n n 
C5D H52N NAD sing 331 n n 
C4D O4D NAD sing 332 n n 
C4D C3D NAD sing 333 n n 
C4D H4D NAD sing 334 n n 
O4D C1D NAD sing 335 n n 
C3D O3D NAD sing 336 n n 
C3D C2D NAD sing 337 n n 
C3D H3D NAD sing 338 n n 
O3D HO3N NAD sing 339 n n 
C2D O2D NAD sing 340 n n 
C2D C1D NAD sing 341 n n 
C2D H2D NAD sing 342 n n 
O2D HO2N NAD sing 343 n n 
C1D N1N NAD sing 344 n n 
C1D H1D NAD sing 345 n n 
N1N C2N NAD sing 346 n y 
N1N C6N NAD doub 347 n y 
C2N C3N NAD doub 348 n y 
C2N H2N NAD sing 349 n n 
C3N C7N NAD sing 350 n n 
C3N C4N NAD sing 351 n y 
C7N O7N NAD doub 352 n n 
C7N N7N NAD sing 353 n n 
N7N H71N NAD sing 354 n n 
N7N H72N NAD sing 355 n n 
C4N C5N NAD doub 356 n y 
C4N H4N NAD sing 357 n n 
C5N C6N NAD sing 358 n y 
C5N H5N NAD sing 359 n n 
C6N H6N NAD sing 360 n n 
#
_atom_sites.entry_id                     2B37 
_atom_sites.fract_transf_matrix[1][1]    0.012145 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009971 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAD A 1 401 401 NAD NAD . 
H 2 NAD B 1 402 402 NAD NAD . 
I 3 8PS C 1 300 300 8PS 8PS . 
J 2 NAD C 1 403 403 NAD NAD . 
K 3 8PS D 1 301 301 8PS 8PS . 
L 2 NAD D 1 404 404 NAD NAD . 
M 2 NAD E 1 405 405 NAD NAD . 
N 2 NAD F 1 406 406 NAD NAD . 
O 4 HOH A 1 402 2 HOH HOH . 
O 4 HOH A 2 403 4 HOH HOH . 
O 4 HOH A 3 404 15 HOH HOH . 
O 4 HOH A 4 405 16 HOH HOH . 
O 4 HOH A 5 406 17 HOH HOH . 
O 4 HOH A 6 407 26 HOH HOH . 
O 4 HOH A 7 408 28 HOH HOH . 
P 4 HOH B 1 403 13 HOH HOH . 
P 4 HOH B 2 404 31 HOH HOH . 
Q 4 HOH C 1 404 1 HOH HOH . 
Q 4 HOH C 2 405 5 HOH HOH . 
Q 4 HOH C 3 406 6 HOH HOH . 
Q 4 HOH C 4 407 10 HOH HOH . 
Q 4 HOH C 5 408 23 HOH HOH . 
Q 4 HOH C 6 409 24 HOH HOH . 
Q 4 HOH C 7 410 30 HOH HOH . 
R 4 HOH D 1 405 7 HOH HOH . 
R 4 HOH D 2 406 9 HOH HOH . 
R 4 HOH D 3 407 11 HOH HOH . 
R 4 HOH D 4 408 14 HOH HOH . 
R 4 HOH D 5 409 22 HOH HOH . 
R 4 HOH D 6 410 25 HOH HOH . 
S 4 HOH E 1 406 8 HOH HOH . 
S 4 HOH E 2 407 18 HOH HOH . 
S 4 HOH E 3 408 27 HOH HOH . 
T 4 HOH F 1 407 12 HOH HOH . 
T 4 HOH F 2 408 19 HOH HOH . 
T 4 HOH F 3 409 20 HOH HOH . 
T 4 HOH F 4 410 21 HOH HOH . 
T 4 HOH F 5 411 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . M 2 64.548 32.608 146.923 1 39.17 ? PA NAD 405 E 1 
HETATM 2 O O1A NAD . . . M 2 65.053 31.385 147.596 1 41.18 ? O1A NAD 405 E 1 
HETATM 3 O O2A NAD . . . M 2 65.065 32.723 145.54 1 40.95 ? O2A NAD 405 E 1 
HETATM 4 O O5B NAD . . . M 2 64.921 33.888 147.828 1 38.52 ? O5B NAD 405 E 1 
HETATM 5 C C5B NAD . . . M 2 65.081 33.817 149.23 1 36.87 ? C5B NAD 405 E 1 
HETATM 6 C C4B NAD . . . M 2 66.222 34.758 149.533 1 36.9 ? C4B NAD 405 E 1 
HETATM 7 O O4B NAD . . . M 2 66.453 34.921 150.925 1 37.5 ? O4B NAD 405 E 1 
HETATM 8 C C3B NAD . . . M 2 67.525 34.225 148.939 1 35.48 ? C3B NAD 405 E 1 
HETATM 9 O O3B NAD . . . M 2 67.96 35.117 147.943 1 31.32 ? O3B NAD 405 E 1 
HETATM 10 C C2B NAD . . . M 2 68.442 34.123 150.138 1 34.91 ? C2B NAD 405 E 1 
HETATM 11 O O2B NAD . . . M 2 69.784 34.434 149.918 1 40.48 ? O2B NAD 405 E 1 
HETATM 12 C C1B NAD . . . M 2 67.847 35.142 151.064 1 35.29 ? C1B NAD 405 E 1 
HETATM 13 N N9A NAD . . . M 2 68.373 34.959 152.415 1 33.47 ? N9A NAD 405 E 1 
HETATM 14 C C8A NAD . . . M 2 68.256 33.836 153.169 1 34.52 ? C8A NAD 405 E 1 
HETATM 15 N N7A NAD . . . M 2 68.902 34.04 154.334 1 37.24 ? N7A NAD 405 E 1 
HETATM 16 C C5A NAD . . . M 2 69.428 35.286 154.313 1 35.43 ? C5A NAD 405 E 1 
HETATM 17 C C6A NAD . . . M 2 70.137 36.005 155.269 1 36.1 ? C6A NAD 405 E 1 
HETATM 18 N N6A NAD . . . M 2 69.906 35.707 156.556 1 35.95 ? N6A NAD 405 E 1 
HETATM 19 N N1A NAD . . . M 2 70.533 37.301 154.949 1 34.9 ? N1A NAD 405 E 1 
HETATM 20 C C2A NAD . . . M 2 70.2 37.86 153.733 1 33.68 ? C2A NAD 405 E 1 
HETATM 21 N N3A NAD . . . M 2 69.478 37.124 152.827 1 32.23 ? N3A NAD 405 E 1 
HETATM 22 C C4A NAD . . . M 2 69.092 35.868 153.113 1 31.96 ? C4A NAD 405 E 1 
HETATM 23 O O3 NAD . . . M 2 62.921 32.55 146.896 1 37.43 ? O3 NAD 405 E 1 
HETATM 24 P PN NAD . . . M 2 61.913 33.681 146.326 1 29.95 ? PN NAD 405 E 1 
HETATM 25 O O1N NAD . . . M 2 60.748 32.973 145.782 1 36.66 ? O1N NAD 405 E 1 
HETATM 26 O O2N NAD . . . M 2 62.629 34.675 145.552 1 33.26 ? O2N NAD 405 E 1 
HETATM 27 O O5D NAD . . . M 2 61.431 34.437 147.621 1 33.35 ? O5D NAD 405 E 1 
HETATM 28 C C5D NAD . . . M 2 61.995 35.671 148.004 1 35.59 ? C5D NAD 405 E 1 
HETATM 29 C C4D NAD . . . M 2 60.915 36.37 148.762 1 35.5 ? C4D NAD 405 E 1 
HETATM 30 O O4D NAD . . . M 2 59.73 36.241 148 1 35.24 ? O4D NAD 405 E 1 
HETATM 31 C C3D NAD . . . M 2 60.674 35.671 150.11 1 35.83 ? C3D NAD 405 E 1 
HETATM 32 O O3D NAD . . . M 2 60.467 36.644 151.097 1 34.92 ? O3D NAD 405 E 1 
HETATM 33 C C2D NAD . . . M 2 59.422 34.863 149.907 1 36.69 ? C2D NAD 405 E 1 
HETATM 34 O O2D NAD . . . M 2 58.643 34.744 151.063 1 37.89 ? O2D NAD 405 E 1 
HETATM 35 C C1D NAD . . . M 2 58.721 35.718 148.869 1 38.46 ? C1D NAD 405 E 1 
HETATM 36 N N1N NAD . . . M 2 57.633 34.986 148.202 1 38.34 ? N1N NAD 405 E 1 
HETATM 37 C C2N NAD . . . M 2 57.86 33.95 147.325 1 35.64 ? C2N NAD 405 E 1 
HETATM 38 C C3N NAD . . . M 2 56.735 33.323 146.768 1 36.87 ? C3N NAD 405 E 1 
HETATM 39 C C7N NAD . . . M 2 56.829 32.196 145.802 1 38.94 ? C7N NAD 405 E 1 
HETATM 40 O O7N NAD . . . M 2 55.6 31.653 145.377 1 40.02 ? O7N NAD 405 E 1 
HETATM 41 N N7N NAD . . . M 2 58.016 31.754 145.352 1 40.36 ? N7N NAD 405 E 1 
HETATM 42 C C4N NAD . . . M 2 55.45 33.743 147.087 1 37.48 ? C4N NAD 405 E 1 
HETATM 43 C C5N NAD . . . M 2 55.263 34.794 147.958 1 39.93 ? C5N NAD 405 E 1 
HETATM 44 C C6N NAD . . . M 2 56.365 35.399 148.525 1 38.25 ? C6N NAD 405 E 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#