data_2B3V # _model_server_result.job_id Av7fBEhvZFWI2dIT76Zxrw _model_server_result.datetime_utc '2025-04-13 15:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":172}' # _entry.id 2B3V # _exptl.entry_id 2B3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B3V _cell.length_a 62.994 _cell.length_b 62.994 _cell.length_c 80.909 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 0 109.108809 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 29 A TYR 29 1_555 A N MSE 30 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 30 A MSE 30 1_555 A N GLU 31 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 75 A ALA 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 76 A MSE 76 1_555 A N TYR 77 A TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C VAL 96 A VAL 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 97 A MSE 97 1_555 A N SER 98 A SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C ALA 117 A ALA 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 118 A MSE 118 1_555 A N ARG 119 A ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C SER 124 A SER 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 125 A MSE 125 1_555 A N HIS 126 A HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C LYS 166 A LYS 166 1_555 A N MSE 167 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 167 A MSE 167 1_555 A N ALA 168 A ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 2B3V _atom_sites.fract_transf_matrix[1][1] 0.015875 _atom_sites.fract_transf_matrix[1][2] 0.009165 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 172 1 ACO ACO . C 3 HOH A 1 202 202 HOH HOH . C 3 HOH A 2 203 203 HOH HOH . C 3 HOH A 3 204 204 HOH HOH . C 3 HOH A 4 205 205 HOH HOH . C 3 HOH A 5 206 206 HOH HOH . C 3 HOH A 6 207 207 HOH HOH . C 3 HOH A 7 208 208 HOH HOH . C 3 HOH A 8 209 209 HOH HOH . C 3 HOH A 9 210 210 HOH HOH . C 3 HOH A 10 211 211 HOH HOH . C 3 HOH A 11 212 212 HOH HOH . C 3 HOH A 12 213 213 HOH HOH . C 3 HOH A 13 214 214 HOH HOH . C 3 HOH A 14 215 215 HOH HOH . C 3 HOH A 15 216 216 HOH HOH . C 3 HOH A 16 217 217 HOH HOH . C 3 HOH A 17 218 218 HOH HOH . C 3 HOH A 18 219 219 HOH HOH . C 3 HOH A 19 220 220 HOH HOH . C 3 HOH A 20 221 221 HOH HOH . C 3 HOH A 21 222 222 HOH HOH . C 3 HOH A 22 223 223 HOH HOH . C 3 HOH A 23 224 224 HOH HOH . C 3 HOH A 24 225 225 HOH HOH . C 3 HOH A 25 226 226 HOH HOH . C 3 HOH A 26 228 228 HOH HOH . C 3 HOH A 27 229 229 HOH HOH . C 3 HOH A 28 230 230 HOH HOH . C 3 HOH A 29 231 231 HOH HOH . C 3 HOH A 30 232 232 HOH HOH . C 3 HOH A 31 233 233 HOH HOH . C 3 HOH A 32 235 235 HOH HOH . C 3 HOH A 33 236 236 HOH HOH . C 3 HOH A 34 237 237 HOH HOH . C 3 HOH A 35 239 239 HOH HOH . C 3 HOH A 36 240 240 HOH HOH . C 3 HOH A 37 241 241 HOH HOH . C 3 HOH A 38 242 242 HOH HOH . C 3 HOH A 39 243 243 HOH HOH . C 3 HOH A 40 244 244 HOH HOH . C 3 HOH A 41 245 245 HOH HOH . C 3 HOH A 42 246 246 HOH HOH . C 3 HOH A 43 247 247 HOH HOH . C 3 HOH A 44 248 248 HOH HOH . C 3 HOH A 45 249 249 HOH HOH . C 3 HOH A 46 250 250 HOH HOH . C 3 HOH A 47 251 251 HOH HOH . C 3 HOH A 48 252 252 HOH HOH . C 3 HOH A 49 253 253 HOH HOH . C 3 HOH A 50 254 254 HOH HOH . C 3 HOH A 51 255 255 HOH HOH . C 3 HOH A 52 256 256 HOH HOH . C 3 HOH A 53 257 257 HOH HOH . C 3 HOH A 54 258 258 HOH HOH . C 3 HOH A 55 259 259 HOH HOH . C 3 HOH A 56 260 260 HOH HOH . C 3 HOH A 57 261 261 HOH HOH . C 3 HOH A 58 262 262 HOH HOH . C 3 HOH A 59 263 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 32.579 56.798 49.27 1 32 ? N1A ACO 172 A 1 HETATM 2 C C2A ACO . . . B 2 32.293 56.846 47.964 1 33.07 ? C2A ACO 172 A 1 HETATM 3 N N3A ACO . . . B 2 31.096 56.474 47.38 1 33.18 ? N3A ACO 172 A 1 HETATM 4 C C4A ACO . . . B 2 30.15 56.017 48.3 1 31.55 ? C4A ACO 172 A 1 HETATM 5 C C5A ACO . . . B 2 30.378 55.94 49.667 1 31.76 ? C5A ACO 172 A 1 HETATM 6 C C6A ACO . . . B 2 31.681 56.361 50.178 1 33.47 ? C6A ACO 172 A 1 HETATM 7 N N6A ACO . . . B 2 31.975 56.311 51.489 1 31.84 ? N6A ACO 172 A 1 HETATM 8 N N7A ACO . . . B 2 29.249 55.443 50.307 1 32.8 ? N7A ACO 172 A 1 HETATM 9 C C8A ACO . . . B 2 28.398 55.245 49.352 1 29.69 ? C8A ACO 172 A 1 HETATM 10 N N9A ACO . . . B 2 28.848 55.568 48.086 1 32.78 ? N9A ACO 172 A 1 HETATM 11 C C1B ACO . . . B 2 28.118 55.461 46.824 1 33.74 ? C1B ACO 172 A 1 HETATM 12 C C2B ACO . . . B 2 27.795 53.986 46.51 1 36.76 ? C2B ACO 172 A 1 HETATM 13 O O2B ACO . . . B 2 28.549 53.541 45.334 1 41.56 ? O2B ACO 172 A 1 HETATM 14 C C3B ACO . . . B 2 26.263 53.907 46.351 1 37.01 ? C3B ACO 172 A 1 HETATM 15 O O3B ACO . . . B 2 26.064 53.699 44.972 1 36.88 ? O3B ACO 172 A 1 HETATM 16 P P3B ACO . . . B 2 24.861 52.947 44.315 1 36.37 ? P3B ACO 172 A 1 HETATM 17 O O7A ACO . . . B 2 24.949 51.623 44.969 1 37.81 ? O7A ACO 172 A 1 HETATM 18 O O8A ACO . . . B 2 25.175 52.932 42.899 1 37.94 ? O8A ACO 172 A 1 HETATM 19 O O9A ACO . . . B 2 23.622 53.697 44.607 1 37.1 ? O9A ACO 172 A 1 HETATM 20 C C4B ACO . . . B 2 25.674 55.203 46.799 1 34.76 ? C4B ACO 172 A 1 HETATM 21 O O4B ACO . . . B 2 26.861 56.081 46.971 1 35.25 ? O4B ACO 172 A 1 HETATM 22 C C5B ACO . . . B 2 25.086 55.024 48.195 1 33.33 ? C5B ACO 172 A 1 HETATM 23 O O5B ACO . . . B 2 25.2 56.293 48.725 1 24 ? O5B ACO 172 A 1 HETATM 24 P P1A ACO . . . B 2 24.965 56.925 50.132 1 23.89 ? P1A ACO 172 A 1 HETATM 25 O O1A ACO . . . B 2 26.12 57.77 50.394 1 20.69 ? O1A ACO 172 A 1 HETATM 26 O O2A ACO . . . B 2 24.594 55.819 51.117 1 17.88 ? O2A ACO 172 A 1 HETATM 27 O O3A ACO . . . B 2 23.846 57.93 49.571 1 23.6 ? O3A ACO 172 A 1 HETATM 28 P P2A ACO . . . B 2 23.136 59.148 50.149 1 20.04 ? P2A ACO 172 A 1 HETATM 29 O O4A ACO . . . B 2 23.506 60.059 49.057 1 24.14 ? O4A ACO 172 A 1 HETATM 30 O O5A ACO . . . B 2 23.626 59.465 51.498 1 21.12 ? O5A ACO 172 A 1 HETATM 31 O O6A ACO . . . B 2 21.586 58.917 50.219 1 21.48 ? O6A ACO 172 A 1 HETATM 32 C CBP ACO . . . B 2 19.609 59.501 48.831 1 16.79 ? CBP ACO 172 A 1 HETATM 33 C CCP ACO . . . B 2 20.721 58.519 49.079 1 15.76 ? CCP ACO 172 A 1 HETATM 34 C CDP ACO . . . B 2 18.769 58.918 47.641 1 15.12 ? CDP ACO 172 A 1 HETATM 35 C CEP ACO . . . B 2 18.715 59.677 50.082 1 14.84 ? CEP ACO 172 A 1 HETATM 36 C CAP ACO . . . B 2 20.267 60.872 48.406 1 16.94 ? CAP ACO 172 A 1 HETATM 37 O OAP ACO . . . B 2 21.079 60.684 47.275 1 17.81 ? OAP ACO 172 A 1 HETATM 38 C C9P ACO . . . B 2 19.233 61.993 48.094 1 16.51 ? C9P ACO 172 A 1 HETATM 39 O O9P ACO . . . B 2 18.805 62.745 48.946 1 17.44 ? O9P ACO 172 A 1 HETATM 40 N N8P ACO . . . B 2 18.826 62.089 46.788 1 15.45 ? N8P ACO 172 A 1 HETATM 41 C C7P ACO . . . B 2 17.85 63.083 46.285 1 18.91 ? C7P ACO 172 A 1 HETATM 42 C C6P ACO . . . B 2 16.386 62.83 46.725 1 22.19 ? C6P ACO 172 A 1 HETATM 43 C C5P ACO . . . B 2 15.9 61.429 46.435 1 24.01 ? C5P ACO 172 A 1 HETATM 44 O O5P ACO . . . B 2 16.064 60.889 45.303 1 22.6 ? O5P ACO 172 A 1 HETATM 45 N N4P ACO . . . B 2 15.294 60.772 47.406 1 27.44 ? N4P ACO 172 A 1 HETATM 46 C C3P ACO . . . B 2 14.694 59.44 47.545 1 35.3 ? C3P ACO 172 A 1 HETATM 47 C C2P ACO . . . B 2 13.233 59.526 47.074 1 40.51 ? C2P ACO 172 A 1 HETATM 48 S S1P ACO . . . B 2 12.581 57.784 47.344 1 51.3 ? S1P ACO 172 A 1 HETATM 49 C C ACO . . . B 2 11.574 57.988 48.472 1 51.68 ? C ACO 172 A 1 HETATM 50 O O ACO . . . B 2 11.211 59.072 49.113 1 54.06 ? O ACO 172 A 1 HETATM 51 C CH3 ACO . . . B 2 10.638 56.876 49.216 1 52.86 ? CH3 ACO 172 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #