data_2B3X # _model_server_result.job_id n-nLJCzMv-VgMpQkFYx_3w _model_server_result.datetime_utc '2024-12-18 04:44:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 2B3X # _exptl.entry_id 2B3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B3X _cell.length_a 75.352 _cell.length_b 103.307 _cell.length_c 225.957 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 407 A HIS 408 1_555 B ZN ZN . A ZN 1001 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OD1 ASP 410 A ASP 411 1_555 B ZN ZN . A ZN 1001 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc3 A SG CYS 436 A CYS 437 1_555 C FE1 SF4 . A SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A SG CYS 502 A CYS 503 1_555 C FE3 SF4 . A SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 A SG CYS 505 A CYS 506 1_555 C FE2 SF4 . A SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 C FE4 SF4 . A SF4 1000 1_555 E O HOH . A HOH 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 B ZN ZN . A ZN 1001 1_555 E O HOH . A HOH 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2B3X _atom_sites.fract_transf_matrix[1][1] 0.01327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1001 1001 ZN ZN . C 3 SF4 A 1 1000 1000 SF4 FS4 . D 4 EDO A 1 1002 408 EDO EGL . E 5 HOH A 1 1003 4 HOH HOH . E 5 HOH A 2 1004 6 HOH HOH . E 5 HOH A 3 1005 7 HOH HOH . E 5 HOH A 4 1006 10 HOH HOH . E 5 HOH A 5 1007 15 HOH HOH . E 5 HOH A 6 1008 16 HOH HOH . E 5 HOH A 7 1009 17 HOH HOH . E 5 HOH A 8 1010 18 HOH HOH . E 5 HOH A 9 1011 19 HOH HOH . E 5 HOH A 10 1012 20 HOH HOH . E 5 HOH A 11 1013 24 HOH HOH . E 5 HOH A 12 1014 26 HOH HOH . E 5 HOH A 13 1015 29 HOH HOH . E 5 HOH A 14 1016 30 HOH HOH . E 5 HOH A 15 1017 33 HOH HOH . E 5 HOH A 16 1018 35 HOH HOH . E 5 HOH A 17 1019 38 HOH HOH . E 5 HOH A 18 1020 42 HOH HOH . E 5 HOH A 19 1021 48 HOH HOH . E 5 HOH A 20 1022 59 HOH HOH . E 5 HOH A 21 1023 61 HOH HOH . E 5 HOH A 22 1024 63 HOH HOH . E 5 HOH A 23 1025 67 HOH HOH . E 5 HOH A 24 1026 74 HOH HOH . E 5 HOH A 25 1027 75 HOH HOH . E 5 HOH A 26 1028 82 HOH HOH . E 5 HOH A 27 1029 83 HOH HOH . E 5 HOH A 28 1030 84 HOH HOH . E 5 HOH A 29 1031 85 HOH HOH . E 5 HOH A 30 1032 86 HOH HOH . E 5 HOH A 31 1033 88 HOH HOH . E 5 HOH A 32 1034 90 HOH HOH . E 5 HOH A 33 1035 91 HOH HOH . E 5 HOH A 34 1036 93 HOH HOH . E 5 HOH A 35 1037 94 HOH HOH . E 5 HOH A 36 1038 95 HOH HOH . E 5 HOH A 37 1039 99 HOH HOH . E 5 HOH A 38 1040 102 HOH HOH . E 5 HOH A 39 1041 106 HOH HOH . E 5 HOH A 40 1042 108 HOH HOH . E 5 HOH A 41 1043 109 HOH HOH . E 5 HOH A 42 1044 115 HOH HOH . E 5 HOH A 43 1045 117 HOH HOH . E 5 HOH A 44 1046 121 HOH HOH . E 5 HOH A 45 1047 131 HOH HOH . E 5 HOH A 46 1048 137 HOH HOH . E 5 HOH A 47 1049 140 HOH HOH . E 5 HOH A 48 1050 142 HOH HOH . E 5 HOH A 49 1051 144 HOH HOH . E 5 HOH A 50 1052 146 HOH HOH . E 5 HOH A 51 1053 147 HOH HOH . E 5 HOH A 52 1054 154 HOH HOH . E 5 HOH A 53 1055 157 HOH HOH . E 5 HOH A 54 1056 173 HOH HOH . E 5 HOH A 55 1057 176 HOH HOH . E 5 HOH A 56 1058 178 HOH HOH . E 5 HOH A 57 1059 180 HOH HOH . E 5 HOH A 58 1060 183 HOH HOH . E 5 HOH A 59 1061 185 HOH HOH . E 5 HOH A 60 1062 186 HOH HOH . E 5 HOH A 61 1063 187 HOH HOH . E 5 HOH A 62 1064 188 HOH HOH . E 5 HOH A 63 1065 189 HOH HOH . E 5 HOH A 64 1066 192 HOH HOH . E 5 HOH A 65 1067 197 HOH HOH . E 5 HOH A 66 1068 202 HOH HOH . E 5 HOH A 67 1069 210 HOH HOH . E 5 HOH A 68 1070 224 HOH HOH . E 5 HOH A 69 1071 225 HOH HOH . E 5 HOH A 70 1072 230 HOH HOH . E 5 HOH A 71 1073 232 HOH HOH . E 5 HOH A 72 1074 235 HOH HOH . E 5 HOH A 73 1075 237 HOH HOH . E 5 HOH A 74 1076 243 HOH HOH . E 5 HOH A 75 1077 245 HOH HOH . E 5 HOH A 76 1078 248 HOH HOH . E 5 HOH A 77 1079 251 HOH HOH . E 5 HOH A 78 1080 253 HOH HOH . E 5 HOH A 79 1081 254 HOH HOH . E 5 HOH A 80 1082 257 HOH HOH . E 5 HOH A 81 1083 258 HOH HOH . E 5 HOH A 82 1084 259 HOH HOH . E 5 HOH A 83 1085 261 HOH HOH . E 5 HOH A 84 1086 264 HOH HOH . E 5 HOH A 85 1087 270 HOH HOH . E 5 HOH A 86 1088 271 HOH HOH . E 5 HOH A 87 1089 276 HOH HOH . E 5 HOH A 88 1090 277 HOH HOH . E 5 HOH A 89 1091 278 HOH HOH . E 5 HOH A 90 1092 279 HOH HOH . E 5 HOH A 91 1093 281 HOH HOH . E 5 HOH A 92 1094 283 HOH HOH . E 5 HOH A 93 1095 284 HOH HOH . E 5 HOH A 94 1096 286 HOH HOH . E 5 HOH A 95 1097 288 HOH HOH . E 5 HOH A 96 1098 291 HOH HOH . E 5 HOH A 97 1099 293 HOH HOH . E 5 HOH A 98 1100 296 HOH HOH . E 5 HOH A 99 1101 299 HOH HOH . E 5 HOH A 100 1102 307 HOH HOH . E 5 HOH A 101 1103 308 HOH HOH . E 5 HOH A 102 1104 310 HOH HOH . E 5 HOH A 103 1105 311 HOH HOH . E 5 HOH A 104 1106 315 HOH HOH . E 5 HOH A 105 1107 317 HOH HOH . E 5 HOH A 106 1108 318 HOH HOH . E 5 HOH A 107 1109 319 HOH HOH . E 5 HOH A 108 1110 325 HOH HOH . E 5 HOH A 109 1111 328 HOH HOH . E 5 HOH A 110 1112 333 HOH HOH . E 5 HOH A 111 1113 334 HOH HOH . E 5 HOH A 112 1114 336 HOH HOH . E 5 HOH A 113 1115 340 HOH HOH . E 5 HOH A 114 1116 342 HOH HOH . E 5 HOH A 115 1117 344 HOH HOH . E 5 HOH A 116 1118 348 HOH HOH . E 5 HOH A 117 1119 349 HOH HOH . E 5 HOH A 118 1120 356 HOH HOH . E 5 HOH A 119 1121 367 HOH HOH . E 5 HOH A 120 1122 368 HOH HOH . E 5 HOH A 121 1123 372 HOH HOH . E 5 HOH A 122 1124 374 HOH HOH . E 5 HOH A 123 1125 377 HOH HOH . E 5 HOH A 124 1126 379 HOH HOH . E 5 HOH A 125 1127 382 HOH HOH . E 5 HOH A 126 1128 386 HOH HOH . E 5 HOH A 127 1129 387 HOH HOH . E 5 HOH A 128 1130 392 HOH HOH . E 5 HOH A 129 1131 394 HOH HOH . E 5 HOH A 130 1132 397 HOH HOH . E 5 HOH A 131 1133 404 HOH HOH . E 5 HOH A 132 1134 409 HOH HOH . E 5 HOH A 133 1135 411 HOH HOH . E 5 HOH A 134 1136 415 HOH HOH . E 5 HOH A 135 1137 422 HOH HOH . E 5 HOH A 136 1138 424 HOH HOH . E 5 HOH A 137 1139 426 HOH HOH . E 5 HOH A 138 1140 428 HOH HOH . E 5 HOH A 139 1141 429 HOH HOH . E 5 HOH A 140 1142 430 HOH HOH . E 5 HOH A 141 1143 431 HOH HOH . E 5 HOH A 142 1144 432 HOH HOH . E 5 HOH A 143 1145 433 HOH HOH . E 5 HOH A 144 1146 434 HOH HOH . E 5 HOH A 145 1147 435 HOH HOH . E 5 HOH A 146 1148 436 HOH HOH . E 5 HOH A 147 1149 437 HOH HOH . E 5 HOH A 148 1150 438 HOH HOH . E 5 HOH A 149 1151 439 HOH HOH . E 5 HOH A 150 1152 440 HOH HOH . E 5 HOH A 151 1153 441 HOH HOH . E 5 HOH A 152 1154 442 HOH HOH . E 5 HOH A 153 1155 443 HOH HOH . E 5 HOH A 154 1156 444 HOH HOH . E 5 HOH A 155 1157 445 HOH HOH . E 5 HOH A 156 1158 446 HOH HOH . E 5 HOH A 157 1159 447 HOH HOH . E 5 HOH A 158 1160 448 HOH HOH . E 5 HOH A 159 1161 449 HOH HOH . E 5 HOH A 160 1162 450 HOH HOH . E 5 HOH A 161 1163 451 HOH HOH . E 5 HOH A 162 1164 452 HOH HOH . E 5 HOH A 163 1165 453 HOH HOH . E 5 HOH A 164 1166 454 HOH HOH . E 5 HOH A 165 1167 455 HOH HOH . E 5 HOH A 166 1168 456 HOH HOH . E 5 HOH A 167 1169 457 HOH HOH . E 5 HOH A 168 1170 458 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 36.344 -2.088 31.967 1 31.74 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . D 4 37.573 -2.06 31.211 1 32.22 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . D 4 36.104 -0.767 32.699 1 31.38 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . D 4 36.842 0.317 32.099 1 30.93 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #