data_2B4B # _model_server_result.job_id e7WXryT57wbFJDxfv2OTcw _model_server_result.datetime_utc '2024-12-12 16:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":172}' # _entry.id 2B4B # _exptl.entry_id 2B4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B4B _cell.length_a 73.809 _cell.length_b 73.809 _cell.length_c 64.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 29 A TYR 29 1_555 A N MSE 30 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 30 A MSE 30 1_555 A N GLU 31 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A CE MSE 30 A MSE 30 1_555 A OE1 GLN 33 A GLN 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? covale ? covale4 A C ALA 75 A ALA 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 76 A MSE 76 1_555 A N TYR 77 A TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C VAL 96 A VAL 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 97 A MSE 97 1_555 A N SER 98 A SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 A C ALA 117 A ALA 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 118 A MSE 118 1_555 A N ARG 119 A ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C SER 124 A SER 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 125 A MSE 125 1_555 A N HIS 126 A HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C LYS 166 A LYS 166 1_555 A N MSE 167 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 167 A MSE 167 1_555 A N ALA 168 A ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C TYR 29 B TYR 29 1_555 B N MSE 30 B MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C MSE 30 B MSE 30 1_555 B N GLU 31 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C ALA 75 B ALA 75 1_555 B N MSE 76 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C MSE 76 B MSE 76 1_555 B N TYR 77 B TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale18 B C VAL 96 B VAL 96 1_555 B N MSE 97 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C MSE 97 B MSE 97 1_555 B N SER 98 B SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 B C ALA 117 B ALA 117 1_555 B N MSE 118 B MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C MSE 118 B MSE 118 1_555 B N ARG 119 B ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale22 B NH2 ARG 121 B ARG 121 3_654 E C13 B33 . B B33 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? covale ? covale23 B C SER 124 B SER 124 1_555 B N MSE 125 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 B C MSE 125 B MSE 125 1_555 B N HIS 126 B HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 B C LYS 166 B LYS 166 1_555 B N MSE 167 B MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 B C MSE 167 B MSE 167 1_555 B N ALA 168 B ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B4B _atom_sites.fract_transf_matrix[1][1] 0.013548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 200 200 COA COA . D 2 COA B 1 172 2 COA COA . E 3 B33 B 1 173 3 B33 B33 . F 4 HOH A 1 201 5 HOH HOH . F 4 HOH A 2 202 7 HOH HOH . F 4 HOH A 3 203 8 HOH HOH . F 4 HOH A 4 204 9 HOH HOH . F 4 HOH A 5 205 10 HOH HOH . F 4 HOH A 6 206 11 HOH HOH . F 4 HOH A 7 207 12 HOH HOH . F 4 HOH A 8 208 13 HOH HOH . F 4 HOH A 9 209 14 HOH HOH . F 4 HOH A 10 210 15 HOH HOH . F 4 HOH A 11 211 16 HOH HOH . F 4 HOH A 12 212 18 HOH HOH . F 4 HOH A 13 213 19 HOH HOH . F 4 HOH A 14 214 22 HOH HOH . F 4 HOH A 15 215 23 HOH HOH . F 4 HOH A 16 216 25 HOH HOH . F 4 HOH A 17 217 26 HOH HOH . F 4 HOH A 18 218 27 HOH HOH . F 4 HOH A 19 219 28 HOH HOH . F 4 HOH A 20 220 30 HOH HOH . F 4 HOH A 21 221 31 HOH HOH . F 4 HOH A 22 222 33 HOH HOH . F 4 HOH A 23 223 34 HOH HOH . F 4 HOH A 24 224 35 HOH HOH . F 4 HOH A 25 225 36 HOH HOH . F 4 HOH A 26 226 37 HOH HOH . F 4 HOH A 27 227 38 HOH HOH . F 4 HOH A 28 228 39 HOH HOH . F 4 HOH A 29 229 40 HOH HOH . F 4 HOH A 30 230 41 HOH HOH . F 4 HOH A 31 231 42 HOH HOH . F 4 HOH A 32 232 43 HOH HOH . F 4 HOH A 33 233 44 HOH HOH . F 4 HOH A 34 234 47 HOH HOH . F 4 HOH A 35 235 48 HOH HOH . F 4 HOH A 36 236 49 HOH HOH . F 4 HOH A 37 237 74 HOH HOH . F 4 HOH A 38 238 75 HOH HOH . F 4 HOH A 39 239 76 HOH HOH . F 4 HOH A 40 240 77 HOH HOH . F 4 HOH A 41 241 78 HOH HOH . F 4 HOH A 42 242 79 HOH HOH . F 4 HOH A 43 243 83 HOH HOH . F 4 HOH A 44 244 85 HOH HOH . F 4 HOH A 45 245 86 HOH HOH . G 4 HOH B 1 174 4 HOH HOH . G 4 HOH B 2 175 6 HOH HOH . G 4 HOH B 3 176 17 HOH HOH . G 4 HOH B 4 177 21 HOH HOH . G 4 HOH B 5 178 24 HOH HOH . G 4 HOH B 6 179 29 HOH HOH . G 4 HOH B 7 180 32 HOH HOH . G 4 HOH B 8 181 45 HOH HOH . G 4 HOH B 9 182 46 HOH HOH . G 4 HOH B 10 183 50 HOH HOH . G 4 HOH B 11 184 51 HOH HOH . G 4 HOH B 12 185 52 HOH HOH . G 4 HOH B 13 186 53 HOH HOH . G 4 HOH B 14 187 54 HOH HOH . G 4 HOH B 15 188 55 HOH HOH . G 4 HOH B 16 189 56 HOH HOH . G 4 HOH B 17 190 57 HOH HOH . G 4 HOH B 18 191 58 HOH HOH . G 4 HOH B 19 192 59 HOH HOH . G 4 HOH B 20 193 60 HOH HOH . G 4 HOH B 21 194 61 HOH HOH . G 4 HOH B 22 195 62 HOH HOH . G 4 HOH B 23 196 63 HOH HOH . G 4 HOH B 24 197 64 HOH HOH . G 4 HOH B 25 198 65 HOH HOH . G 4 HOH B 26 199 66 HOH HOH . G 4 HOH B 27 200 67 HOH HOH . G 4 HOH B 28 201 68 HOH HOH . G 4 HOH B 29 202 69 HOH HOH . G 4 HOH B 30 203 70 HOH HOH . G 4 HOH B 31 204 71 HOH HOH . G 4 HOH B 32 205 72 HOH HOH . G 4 HOH B 33 206 73 HOH HOH . G 4 HOH B 34 207 80 HOH HOH . G 4 HOH B 35 208 81 HOH HOH . G 4 HOH B 36 209 82 HOH HOH . G 4 HOH B 37 210 84 HOH HOH . G 4 HOH B 38 211 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 2 12.556 56.967 -19.084 1 41.53 ? N1A COA 172 B 1 HETATM 2 C C2A COA . . . D 2 13.222 55.802 -19.118 1 41.8 ? C2A COA 172 B 1 HETATM 3 N N3A COA . . . D 2 14.481 55.721 -18.658 1 41.04 ? N3A COA 172 B 1 HETATM 4 C C4A COA . . . D 2 15.103 56.81 -18.148 1 40.42 ? C4A COA 172 B 1 HETATM 5 C C5A COA . . . D 2 14.441 58.031 -18.094 1 40.29 ? C5A COA 172 B 1 HETATM 6 C C6A COA . . . D 2 13.134 58.093 -18.587 1 40.61 ? C6A COA 172 B 1 HETATM 7 N N6A COA . . . D 2 12.475 59.252 -18.628 1 40.42 ? N6A COA 172 B 1 HETATM 8 N N7A COA . . . D 2 15.274 58.923 -17.554 1 37.61 ? N7A COA 172 B 1 HETATM 9 C C8A COA . . . D 2 16.424 58.29 -17.276 1 38.29 ? C8A COA 172 B 1 HETATM 10 N N9A COA . . . D 2 16.317 56.994 -17.649 1 38.81 ? N9A COA 172 B 1 HETATM 11 C C1B COA . . . D 2 17.375 55.949 -17.589 1 38.72 ? C1B COA 172 B 1 HETATM 12 C C2B COA . . . D 2 18.629 56.449 -18.318 1 37.38 ? C2B COA 172 B 1 HETATM 13 O O2B COA . . . D 2 18.746 55.818 -19.59 1 38.87 ? O2B COA 172 B 1 HETATM 14 C C3B COA . . . D 2 19.732 55.995 -17.417 1 35.65 ? C3B COA 172 B 1 HETATM 15 O O3B COA . . . D 2 19.863 54.582 -17.572 1 36.15 ? O3B COA 172 B 1 HETATM 16 P P3B COA . . . D 2 21.223 53.905 -18.113 1 37.54 ? P3B COA 172 B 1 HETATM 17 O O7A COA . . . D 2 22.316 54.286 -17.002 1 37 ? O7A COA 172 B 1 HETATM 18 O O8A COA . . . D 2 21.041 52.434 -18.11 1 39.73 ? O8A COA 172 B 1 HETATM 19 O O9A COA . . . D 2 21.586 54.568 -19.382 1 38.24 ? O9A COA 172 B 1 HETATM 20 C C4B COA . . . D 2 19.049 56.289 -16.08 1 35.42 ? C4B COA 172 B 1 HETATM 21 O O4B COA . . . D 2 17.832 55.675 -16.206 1 37.75 ? O4B COA 172 B 1 HETATM 22 C C5B COA . . . D 2 18.668 56.815 -14.715 1 33.22 ? C5B COA 172 B 1 HETATM 23 O O5B COA . . . D 2 18.701 58.224 -14.763 1 28.94 ? O5B COA 172 B 1 HETATM 24 P P1A COA . . . D 2 18.009 58.71 -13.467 1 34.07 ? P1A COA 172 B 1 HETATM 25 O O1A COA . . . D 2 17.714 60.17 -13.845 1 34.26 ? O1A COA 172 B 1 HETATM 26 O O2A COA . . . D 2 18.716 58.712 -12.112 1 36.04 ? O2A COA 172 B 1 HETATM 27 O O3A COA . . . D 2 16.682 57.986 -13.433 1 35.61 ? O3A COA 172 B 1 HETATM 28 P P2A COA . . . D 2 15.264 58.041 -12.912 1 34.71 ? P2A COA 172 B 1 HETATM 29 O O4A COA . . . D 2 14.526 58.429 -14.224 1 35.16 ? O4A COA 172 B 1 HETATM 30 O O5A COA . . . D 2 15.046 59.066 -11.778 1 33.92 ? O5A COA 172 B 1 HETATM 31 O O6A COA . . . D 2 14.985 56.652 -12.277 1 36.69 ? O6A COA 172 B 1 HETATM 32 C CBP COA . . . D 2 13.592 54.347 -12.804 1 42.11 ? CBP COA 172 B 1 HETATM 33 C CCP COA . . . D 2 14.669 55.446 -13.067 1 38.85 ? CCP COA 172 B 1 HETATM 34 C CDP COA . . . D 2 13.422 54.337 -11.237 1 39.75 ? CDP COA 172 B 1 HETATM 35 C CEP COA . . . D 2 14.391 53.233 -13.481 1 42.14 ? CEP COA 172 B 1 HETATM 36 C CAP COA . . . D 2 12.469 55.005 -13.684 1 44.95 ? CAP COA 172 B 1 HETATM 37 O OAP COA . . . D 2 12.071 56.088 -14.58 1 46.36 ? OAP COA 172 B 1 HETATM 38 C C9P COA . . . D 2 11.277 54.462 -13.197 1 46.96 ? C9P COA 172 B 1 HETATM 39 O O9P COA . . . D 2 10.683 55.062 -12.122 1 46.02 ? O9P COA 172 B 1 HETATM 40 N N8P COA . . . D 2 11.022 53.146 -13.697 0 46.92 ? N8P COA 172 B 1 HETATM 41 C C7P COA . . . D 2 10.303 52.084 -14.156 0 47.7 ? C7P COA 172 B 1 HETATM 42 C C6P COA . . . D 2 10.363 51.479 -15.559 0 48.18 ? C6P COA 172 B 1 HETATM 43 C C5P COA . . . D 2 11.101 51.838 -16.835 0 48.57 ? C5P COA 172 B 1 HETATM 44 O O5P COA . . . D 2 10.697 52.791 -17.691 0 48.64 ? O5P COA 172 B 1 HETATM 45 N N4P COA . . . D 2 12.186 51.076 -16.966 0 48.85 ? N4P COA 172 B 1 HETATM 46 C C3P COA . . . D 2 13.443 51.022 -17.496 0 49.14 ? C3P COA 172 B 1 HETATM 47 C C2P COA . . . D 2 14.931 51.148 -17.844 0 49.34 ? C2P COA 172 B 1 HETATM 48 S S1P COA . . . D 2 16.073 52.341 -18.66 0 49.44 ? S1P COA 172 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #