data_2B4B # _model_server_result.job_id Gm4JKhB3vpd0-lK4sV6FgQ _model_server_result.datetime_utc '2024-12-12 16:35:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":173}' # _entry.id 2B4B # _exptl.entry_id 2B4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.352 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-ETHYL-N-[3-(PROPYLAMINO)PROPYL]PROPANE-1,3-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B4B _cell.length_a 73.809 _cell.length_b 73.809 _cell.length_c 64.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 29 A TYR 29 1_555 A N MSE 30 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 30 A MSE 30 1_555 A N GLU 31 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A CE MSE 30 A MSE 30 1_555 A OE1 GLN 33 A GLN 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? covale ? covale4 A C ALA 75 A ALA 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 76 A MSE 76 1_555 A N TYR 77 A TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C VAL 96 A VAL 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 97 A MSE 97 1_555 A N SER 98 A SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 A C ALA 117 A ALA 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 118 A MSE 118 1_555 A N ARG 119 A ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C SER 124 A SER 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 125 A MSE 125 1_555 A N HIS 126 A HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C LYS 166 A LYS 166 1_555 A N MSE 167 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 167 A MSE 167 1_555 A N ALA 168 A ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C TYR 29 B TYR 29 1_555 B N MSE 30 B MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C MSE 30 B MSE 30 1_555 B N GLU 31 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C ALA 75 B ALA 75 1_555 B N MSE 76 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C MSE 76 B MSE 76 1_555 B N TYR 77 B TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale18 B C VAL 96 B VAL 96 1_555 B N MSE 97 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C MSE 97 B MSE 97 1_555 B N SER 98 B SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 B C ALA 117 B ALA 117 1_555 B N MSE 118 B MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C MSE 118 B MSE 118 1_555 B N ARG 119 B ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale22 B NH2 ARG 121 B ARG 121 3_654 E C13 B33 . B B33 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? covale ? covale23 B C SER 124 B SER 124 1_555 B N MSE 125 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 B C MSE 125 B MSE 125 1_555 B N HIS 126 B HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 B C LYS 166 B LYS 166 1_555 B N MSE 167 B MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 B C MSE 167 B MSE 167 1_555 B N ALA 168 B ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C11 H27 N3' _chem_comp.formula_weight 201.352 _chem_comp.id B33 _chem_comp.mon_nstd_flag . _chem_comp.name N-ETHYL-N-[3-(PROPYLAMINO)PROPYL]PROPANE-1,3-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BE3 # _atom_sites.entry_id 2B4B _atom_sites.fract_transf_matrix[1][1] 0.013548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 200 200 COA COA . D 2 COA B 1 172 2 COA COA . E 3 B33 B 1 173 3 B33 B33 . F 4 HOH A 1 201 5 HOH HOH . F 4 HOH A 2 202 7 HOH HOH . F 4 HOH A 3 203 8 HOH HOH . F 4 HOH A 4 204 9 HOH HOH . F 4 HOH A 5 205 10 HOH HOH . F 4 HOH A 6 206 11 HOH HOH . F 4 HOH A 7 207 12 HOH HOH . F 4 HOH A 8 208 13 HOH HOH . F 4 HOH A 9 209 14 HOH HOH . F 4 HOH A 10 210 15 HOH HOH . F 4 HOH A 11 211 16 HOH HOH . F 4 HOH A 12 212 18 HOH HOH . F 4 HOH A 13 213 19 HOH HOH . F 4 HOH A 14 214 22 HOH HOH . F 4 HOH A 15 215 23 HOH HOH . F 4 HOH A 16 216 25 HOH HOH . F 4 HOH A 17 217 26 HOH HOH . F 4 HOH A 18 218 27 HOH HOH . F 4 HOH A 19 219 28 HOH HOH . F 4 HOH A 20 220 30 HOH HOH . F 4 HOH A 21 221 31 HOH HOH . F 4 HOH A 22 222 33 HOH HOH . F 4 HOH A 23 223 34 HOH HOH . F 4 HOH A 24 224 35 HOH HOH . F 4 HOH A 25 225 36 HOH HOH . F 4 HOH A 26 226 37 HOH HOH . F 4 HOH A 27 227 38 HOH HOH . F 4 HOH A 28 228 39 HOH HOH . F 4 HOH A 29 229 40 HOH HOH . F 4 HOH A 30 230 41 HOH HOH . F 4 HOH A 31 231 42 HOH HOH . F 4 HOH A 32 232 43 HOH HOH . F 4 HOH A 33 233 44 HOH HOH . F 4 HOH A 34 234 47 HOH HOH . F 4 HOH A 35 235 48 HOH HOH . F 4 HOH A 36 236 49 HOH HOH . F 4 HOH A 37 237 74 HOH HOH . F 4 HOH A 38 238 75 HOH HOH . F 4 HOH A 39 239 76 HOH HOH . F 4 HOH A 40 240 77 HOH HOH . F 4 HOH A 41 241 78 HOH HOH . F 4 HOH A 42 242 79 HOH HOH . F 4 HOH A 43 243 83 HOH HOH . F 4 HOH A 44 244 85 HOH HOH . F 4 HOH A 45 245 86 HOH HOH . G 4 HOH B 1 174 4 HOH HOH . G 4 HOH B 2 175 6 HOH HOH . G 4 HOH B 3 176 17 HOH HOH . G 4 HOH B 4 177 21 HOH HOH . G 4 HOH B 5 178 24 HOH HOH . G 4 HOH B 6 179 29 HOH HOH . G 4 HOH B 7 180 32 HOH HOH . G 4 HOH B 8 181 45 HOH HOH . G 4 HOH B 9 182 46 HOH HOH . G 4 HOH B 10 183 50 HOH HOH . G 4 HOH B 11 184 51 HOH HOH . G 4 HOH B 12 185 52 HOH HOH . G 4 HOH B 13 186 53 HOH HOH . G 4 HOH B 14 187 54 HOH HOH . G 4 HOH B 15 188 55 HOH HOH . G 4 HOH B 16 189 56 HOH HOH . G 4 HOH B 17 190 57 HOH HOH . G 4 HOH B 18 191 58 HOH HOH . G 4 HOH B 19 192 59 HOH HOH . G 4 HOH B 20 193 60 HOH HOH . G 4 HOH B 21 194 61 HOH HOH . G 4 HOH B 22 195 62 HOH HOH . G 4 HOH B 23 196 63 HOH HOH . G 4 HOH B 24 197 64 HOH HOH . G 4 HOH B 25 198 65 HOH HOH . G 4 HOH B 26 199 66 HOH HOH . G 4 HOH B 27 200 67 HOH HOH . G 4 HOH B 28 201 68 HOH HOH . G 4 HOH B 29 202 69 HOH HOH . G 4 HOH B 30 203 70 HOH HOH . G 4 HOH B 31 204 71 HOH HOH . G 4 HOH B 32 205 72 HOH HOH . G 4 HOH B 33 206 73 HOH HOH . G 4 HOH B 34 207 80 HOH HOH . G 4 HOH B 35 208 81 HOH HOH . G 4 HOH B 36 209 82 HOH HOH . G 4 HOH B 37 210 84 HOH HOH . G 4 HOH B 38 211 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 B33 . . . E 3 22.053 31.774 -5.944 0 54.47 ? C10 B33 173 B 1 HETATM 2 C C12 B33 . . . E 3 24.189 31.309 -6.82 0 55.35 ? C12 B33 173 B 1 HETATM 3 C C13 B33 . . . E 3 25.598 31.57 -7.225 0 55.59 ? C13 B33 173 B 1 HETATM 4 C C1 B33 . . . E 3 13.425 26.783 -1.97 1 53.91 ? C1 B33 173 B 1 HETATM 5 C C2 B33 . . . E 3 14.78 27.232 -2.152 1 54.75 ? C2 B33 173 B 1 HETATM 6 N N3 B33 . . . E 3 14.998 28.672 -2.13 1 55.54 ? N3 B33 173 B 1 HETATM 7 C C4 B33 . . . E 3 16.238 29.384 -2.548 1 54.62 ? C4 B33 173 B 1 HETATM 8 C C5 B33 . . . E 3 17.471 29.64 -3.33 1 53.98 ? C5 B33 173 B 1 HETATM 9 C C6 B33 . . . E 3 18.474 30.313 -4.145 1 54.13 ? C6 B33 173 B 1 HETATM 10 N N7 B33 . . . E 3 18.015 31.304 -5.212 1 51.97 ? N7 B33 173 B 1 HETATM 11 C C8 B33 . . . E 3 19.506 31.583 -5.89 0 53.48 ? C8 B33 173 B 1 HETATM 12 C C9 B33 . . . E 3 20.902 30.972 -6.08 0 53.81 ? C9 B33 173 B 1 HETATM 13 N N11 B33 . . . E 3 23.493 32.442 -6.234 0 54.92 ? N11 B33 173 B 1 HETATM 14 C C14 B33 . . . E 3 25.889 32.939 -7.796 0 55.77 ? C14 B33 173 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #