data_2B4B # _model_server_result.job_id tAi8d4o3kKafODIN30_H5w _model_server_result.datetime_utc '2024-12-12 16:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 2B4B # _exptl.entry_id 2B4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B4B _cell.length_a 73.809 _cell.length_b 73.809 _cell.length_c 64.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 29 A TYR 29 1_555 A N MSE 30 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 30 A MSE 30 1_555 A N GLU 31 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A CE MSE 30 A MSE 30 1_555 A OE1 GLN 33 A GLN 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? covale ? covale4 A C ALA 75 A ALA 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 76 A MSE 76 1_555 A N TYR 77 A TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C VAL 96 A VAL 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 97 A MSE 97 1_555 A N SER 98 A SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 A C ALA 117 A ALA 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 118 A MSE 118 1_555 A N ARG 119 A ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C SER 124 A SER 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 125 A MSE 125 1_555 A N HIS 126 A HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C LYS 166 A LYS 166 1_555 A N MSE 167 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 167 A MSE 167 1_555 A N ALA 168 A ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C TYR 29 B TYR 29 1_555 B N MSE 30 B MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C MSE 30 B MSE 30 1_555 B N GLU 31 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C ALA 75 B ALA 75 1_555 B N MSE 76 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C MSE 76 B MSE 76 1_555 B N TYR 77 B TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale18 B C VAL 96 B VAL 96 1_555 B N MSE 97 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C MSE 97 B MSE 97 1_555 B N SER 98 B SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 B C ALA 117 B ALA 117 1_555 B N MSE 118 B MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C MSE 118 B MSE 118 1_555 B N ARG 119 B ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale22 B NH2 ARG 121 B ARG 121 3_654 E C13 B33 . B B33 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? covale ? covale23 B C SER 124 B SER 124 1_555 B N MSE 125 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 B C MSE 125 B MSE 125 1_555 B N HIS 126 B HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 B C LYS 166 B LYS 166 1_555 B N MSE 167 B MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 B C MSE 167 B MSE 167 1_555 B N ALA 168 B ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B4B _atom_sites.fract_transf_matrix[1][1] 0.013548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 200 200 COA COA . D 2 COA B 1 172 2 COA COA . E 3 B33 B 1 173 3 B33 B33 . F 4 HOH A 1 201 5 HOH HOH . F 4 HOH A 2 202 7 HOH HOH . F 4 HOH A 3 203 8 HOH HOH . F 4 HOH A 4 204 9 HOH HOH . F 4 HOH A 5 205 10 HOH HOH . F 4 HOH A 6 206 11 HOH HOH . F 4 HOH A 7 207 12 HOH HOH . F 4 HOH A 8 208 13 HOH HOH . F 4 HOH A 9 209 14 HOH HOH . F 4 HOH A 10 210 15 HOH HOH . F 4 HOH A 11 211 16 HOH HOH . F 4 HOH A 12 212 18 HOH HOH . F 4 HOH A 13 213 19 HOH HOH . F 4 HOH A 14 214 22 HOH HOH . F 4 HOH A 15 215 23 HOH HOH . F 4 HOH A 16 216 25 HOH HOH . F 4 HOH A 17 217 26 HOH HOH . F 4 HOH A 18 218 27 HOH HOH . F 4 HOH A 19 219 28 HOH HOH . F 4 HOH A 20 220 30 HOH HOH . F 4 HOH A 21 221 31 HOH HOH . F 4 HOH A 22 222 33 HOH HOH . F 4 HOH A 23 223 34 HOH HOH . F 4 HOH A 24 224 35 HOH HOH . F 4 HOH A 25 225 36 HOH HOH . F 4 HOH A 26 226 37 HOH HOH . F 4 HOH A 27 227 38 HOH HOH . F 4 HOH A 28 228 39 HOH HOH . F 4 HOH A 29 229 40 HOH HOH . F 4 HOH A 30 230 41 HOH HOH . F 4 HOH A 31 231 42 HOH HOH . F 4 HOH A 32 232 43 HOH HOH . F 4 HOH A 33 233 44 HOH HOH . F 4 HOH A 34 234 47 HOH HOH . F 4 HOH A 35 235 48 HOH HOH . F 4 HOH A 36 236 49 HOH HOH . F 4 HOH A 37 237 74 HOH HOH . F 4 HOH A 38 238 75 HOH HOH . F 4 HOH A 39 239 76 HOH HOH . F 4 HOH A 40 240 77 HOH HOH . F 4 HOH A 41 241 78 HOH HOH . F 4 HOH A 42 242 79 HOH HOH . F 4 HOH A 43 243 83 HOH HOH . F 4 HOH A 44 244 85 HOH HOH . F 4 HOH A 45 245 86 HOH HOH . G 4 HOH B 1 174 4 HOH HOH . G 4 HOH B 2 175 6 HOH HOH . G 4 HOH B 3 176 17 HOH HOH . G 4 HOH B 4 177 21 HOH HOH . G 4 HOH B 5 178 24 HOH HOH . G 4 HOH B 6 179 29 HOH HOH . G 4 HOH B 7 180 32 HOH HOH . G 4 HOH B 8 181 45 HOH HOH . G 4 HOH B 9 182 46 HOH HOH . G 4 HOH B 10 183 50 HOH HOH . G 4 HOH B 11 184 51 HOH HOH . G 4 HOH B 12 185 52 HOH HOH . G 4 HOH B 13 186 53 HOH HOH . G 4 HOH B 14 187 54 HOH HOH . G 4 HOH B 15 188 55 HOH HOH . G 4 HOH B 16 189 56 HOH HOH . G 4 HOH B 17 190 57 HOH HOH . G 4 HOH B 18 191 58 HOH HOH . G 4 HOH B 19 192 59 HOH HOH . G 4 HOH B 20 193 60 HOH HOH . G 4 HOH B 21 194 61 HOH HOH . G 4 HOH B 22 195 62 HOH HOH . G 4 HOH B 23 196 63 HOH HOH . G 4 HOH B 24 197 64 HOH HOH . G 4 HOH B 25 198 65 HOH HOH . G 4 HOH B 26 199 66 HOH HOH . G 4 HOH B 27 200 67 HOH HOH . G 4 HOH B 28 201 68 HOH HOH . G 4 HOH B 29 202 69 HOH HOH . G 4 HOH B 30 203 70 HOH HOH . G 4 HOH B 31 204 71 HOH HOH . G 4 HOH B 32 205 72 HOH HOH . G 4 HOH B 33 206 73 HOH HOH . G 4 HOH B 34 207 80 HOH HOH . G 4 HOH B 35 208 81 HOH HOH . G 4 HOH B 36 209 82 HOH HOH . G 4 HOH B 37 210 84 HOH HOH . G 4 HOH B 38 211 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 2 -0.636 8.16 3.106 1 41.53 ? N1A COA 200 A 1 HETATM 2 C C2A COA . . . C 2 -0.69 8.184 1.765 1 41.8 ? C2A COA 200 A 1 HETATM 3 N N3A COA . . . C 2 0.02 9.086 1.068 1 41.04 ? N3A COA 200 A 1 HETATM 4 C C4A COA . . . C 2 0.805 9.989 1.702 1 40.42 ? C4A COA 200 A 1 HETATM 5 C C5A COA . . . C 2 0.887 9.99 3.09 1 40.29 ? C5A COA 200 A 1 HETATM 6 C C6A COA . . . C 2 0.132 9.045 3.794 1 40.61 ? C6A COA 200 A 1 HETATM 7 N N6A COA . . . C 2 0.113 9.047 5.13 1 40.42 ? N6A COA 200 A 1 HETATM 8 N N7A COA . . . C 2 1.718 10.97 3.449 1 37.61 ? N7A COA 200 A 1 HETATM 9 C C8A COA . . . C 2 2.149 11.57 2.328 1 38.29 ? C8A COA 200 A 1 HETATM 10 N N9A COA . . . C 2 1.579 10.968 1.259 1 38.81 ? N9A COA 200 A 1 HETATM 11 C C1B COA . . . C 2 1.72 11.353 -0.172 1 38.72 ? C1B COA 200 A 1 HETATM 12 C C2B COA . . . C 2 1.364 12.836 -0.34 1 37.38 ? C2B COA 200 A 1 HETATM 13 O O2B COA . . . C 2 0.072 12.972 -0.923 1 38.87 ? O2B COA 200 A 1 HETATM 14 C C3B COA . . . C 2 2.411 13.317 -1.291 1 35.65 ? C3B COA 200 A 1 HETATM 15 O O3B COA . . . C 2 2.086 12.805 -2.585 1 36.15 ? O3B COA 200 A 1 HETATM 16 P P3B COA . . . C 2 1.767 13.775 -3.832 1 37.54 ? P3B COA 200 A 1 HETATM 17 O O7A COA . . . C 2 3.133 14.585 -4.056 1 37 ? O7A COA 200 A 1 HETATM 18 O O8A COA . . . C 2 1.519 12.93 -5.024 1 39.73 ? O8A COA 200 A 1 HETATM 19 O O9A COA . . . C 2 0.717 14.726 -3.41 1 38.24 ? O9A COA 200 A 1 HETATM 20 C C4B COA . . . C 2 3.592 12.529 -0.725 1 35.42 ? C4B COA 200 A 1 HETATM 21 O O4B COA . . . C 2 3.116 11.248 -0.66 1 37.75 ? O4B COA 200 A 1 HETATM 22 C C5B COA . . . C 2 4.608 13.058 0.262 1 33.22 ? C5B COA 200 A 1 HETATM 23 O O5B COA . . . C 2 4.001 14.093 1.003 1 28.94 ? O5B COA 200 A 1 HETATM 24 P P1A COA . . . C 2 4.835 14.389 2.319 1 25.84 ? P1A COA 200 A 1 HETATM 25 O O1A COA . . . C 2 5.252 13.093 3.05 1 33.59 ? O1A COA 200 A 1 HETATM 26 O O2A COA . . . C 2 3.667 15.078 3.066 1 32.61 ? O2A COA 200 A 1 HETATM 27 O O3A COA . . . C 2 6.052 15.334 2.058 1 28.9 ? O3A COA 200 A 1 HETATM 28 P P2A COA . . . C 2 7.522 15.111 2.418 1 30.55 ? P2A COA 200 A 1 HETATM 29 O O4A COA . . . C 2 7.895 14.065 1.393 1 27.79 ? O4A COA 200 A 1 HETATM 30 O O5A COA . . . C 2 7.825 14.631 3.872 1 24.03 ? O5A COA 200 A 1 HETATM 31 O O6A COA . . . C 2 8.161 16.537 2.377 1 29.6 ? O6A COA 200 A 1 HETATM 32 C CBP COA . . . C 2 9.59 17.954 0.601 1 28.34 ? CBP COA 200 A 1 HETATM 33 C CCP COA . . . C 2 8.268 17.387 1.194 1 28.9 ? CCP COA 200 A 1 HETATM 34 C CDP COA . . . C 2 10.207 18.855 1.691 1 26.29 ? CDP COA 200 A 1 HETATM 35 C CEP COA . . . C 2 9.181 18.784 -0.587 1 29.29 ? CEP COA 200 A 1 HETATM 36 C CAP COA . . . C 2 10.612 16.824 0.308 1 29.78 ? CAP COA 200 A 1 HETATM 37 O OAP COA . . . C 2 9.945 15.631 -0.228 1 30.57 ? OAP COA 200 A 1 HETATM 38 C C9P COA . . . C 2 12.132 16.653 0.264 1 28.16 ? C9P COA 200 A 1 HETATM 39 O O9P COA . . . C 2 12.65 17.215 1.318 1 30.09 ? O9P COA 200 A 1 HETATM 40 N N8P COA . . . C 2 12.59 16.65 -0.969 1 29.95 ? N8P COA 200 A 1 HETATM 41 C C7P COA . . . C 2 13.424 17.411 -1.731 1 31.45 ? C7P COA 200 A 1 HETATM 42 C C6P COA . . . C 2 14.008 18.697 -1.438 1 31.53 ? C6P COA 200 A 1 HETATM 43 C C5P COA . . . C 2 13.062 19.704 -1.983 1 30.39 ? C5P COA 200 A 1 HETATM 44 O O5P COA . . . C 2 12.624 19.677 -3.225 1 33.36 ? O5P COA 200 A 1 HETATM 45 N N4P COA . . . C 2 12.734 20.584 -1.084 1 34.8 ? N4P COA 200 A 1 HETATM 46 C C3P COA . . . C 2 11.9 21.618 -1.266 1 35.65 ? C3P COA 200 A 1 HETATM 47 C C2P COA . . . C 2 11.684 22.988 -1.798 1 39.31 ? C2P COA 200 A 1 HETATM 48 S S1P COA . . . C 2 12.01 23.847 -3.355 1 39.85 ? S1P COA 200 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #