data_2B4K
#
_model_server_result.job_id            7TIfCufa-nwkM3Ps6_gyjw 
_model_server_result.datetime_utc      '2024-10-11 11:23:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b4k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":3598}' 
#
_entry.id    2B4K 
#
_exptl.entry_id    2B4K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              151.163 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-PHENYLGLYCINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2B4K 
_cell.length_a            340.909 
_cell.length_b            340.909 
_cell.length_c            340.909 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B4K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 398 A CYS 438 1_555 A SG CYS 402 A CYS 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
disulf ? disulf2 D SG CYS 398 D CYS 438 1_555 D SG CYS 402 D CYS 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
#
_chem_comp.formula           'C8 H9 N O2' 
_chem_comp.formula_weight    151.163 
_chem_comp.id                PG9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-PHENYLGLYCINE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PG9 sing 250 n n 
N H PG9 sing 251 n n 
N H2 PG9 sing 252 n n 
CA CB PG9 sing 253 n n 
CA C PG9 sing 254 n n 
CA HA PG9 sing 255 n n 
CB CG1 PG9 sing 256 n y 
CB CG2 PG9 doub 257 n y 
CG1 CD1 PG9 doub 258 n y 
CG1 HG1 PG9 sing 259 n n 
CD1 CE PG9 sing 260 n y 
CD1 HD1 PG9 sing 261 n n 
CE CD2 PG9 doub 262 n y 
CE HE PG9 sing 263 n n 
CD2 CG2 PG9 sing 264 n y 
CD2 HD2 PG9 sing 265 n n 
CG2 HG2 PG9 sing 266 n n 
C O PG9 doub 267 n n 
C OXT PG9 sing 268 n n 
OXT HXT PG9 sing 269 n n 
#
_atom_sites.entry_id                     2B4K 
_atom_sites.fract_transf_matrix[1][1]    0.002933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002933 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PG9 A 1 3600 3600 PG9 PGY . 
F 3 GOL A 1 2431 2431 GOL GOL . 
G 3 GOL A 1 2433 2433 GOL GOL . 
H 2 PG9 B 1 3599 3599 PG9 PGY . 
I 3 GOL B 1 2432 2432 GOL GOL . 
J 3 GOL C 1 2430 2430 GOL GOL . 
K 2 PG9 D 1 3598 3598 PG9 PGY . 
L 4 HOH A 1 33 33 HOH HOH . 
M 4 HOH B 1 9 9 HOH HOH . 
M 4 HOH B 2 15 15 HOH HOH . 
M 4 HOH B 3 37 37 HOH HOH . 
M 4 HOH B 4 2445 2445 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PG9 . . . K 2 71.811 67.645 169.151 1 19.29 ? N PG9 3598 D 1 
HETATM 2 C CA PG9 . . . K 2 70.827 66.908 168.305 1 19.29 ? CA PG9 3598 D 1 
HETATM 3 C CB PG9 . . . K 2 71.238 65.496 168.239 1 19.29 ? CB PG9 3598 D 1 
HETATM 4 C CG1 PG9 . . . K 2 70.321 64.499 168.563 1 19.29 ? CG1 PG9 3598 D 1 
HETATM 5 C CD1 PG9 . . . K 2 70.706 63.163 168.514 1 19.29 ? CD1 PG9 3598 D 1 
HETATM 6 C CE PG9 . . . K 2 72.008 62.835 168.14 1 19.29 ? CE PG9 3598 D 1 
HETATM 7 C CD2 PG9 . . . K 2 72.927 63.835 167.817 1 19.29 ? CD2 PG9 3598 D 1 
HETATM 8 C CG2 PG9 . . . K 2 72.541 65.166 167.868 1 19.29 ? CG2 PG9 3598 D 1 
HETATM 9 C C PG9 . . . K 2 70.767 67.51 166.929 1 19.29 ? C PG9 3598 D 1 
HETATM 10 O O PG9 . . . K 2 69.675 67.72 166.387 1 19.29 ? O PG9 3598 D 1 
HETATM 11 O OXT PG9 . . . K 2 71.809 67.807 166.33 1 19.29 ? OXT PG9 3598 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#