data_2B4R # _model_server_result.job_id c31YP6JmiY4bJpXgtGajhA _model_server_result.datetime_utc '2024-10-13 19:18:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":804}' # _entry.id 2B4R # _exptl.entry_id 2B4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.35 _cell.angle_gamma 90 _cell.entry_id 2B4R _cell.length_a 69.327 _cell.length_b 104.585 _cell.length_c 90.838 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 N N N ? 4 O N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 2B4R _atom_sites.fract_transf_matrix[1][1] 0.014424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004507 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD O 1 801 501 NAD NAD . F 3 AES O 1 601 601 AES AES . G 4 GOL O 1 804 704 GOL GOL . H 2 NAD P 1 701 501 NAD NAD . I 3 AES P 1 602 602 AES AES . J 4 GOL P 1 703 703 GOL GOL . K 2 NAD Q 1 501 501 NAD NAD . L 2 NAD R 1 901 501 NAD NAD . M 3 AES R 1 603 603 AES AES . N 4 GOL R 1 503 703 GOL GOL . O 4 GOL R 1 903 703 GOL GOL . P 5 HOH O 1 805 2 HOH HOH . P 5 HOH O 2 806 3 HOH HOH . P 5 HOH O 3 807 6 HOH HOH . P 5 HOH O 4 808 8 HOH HOH . P 5 HOH O 5 809 9 HOH HOH . P 5 HOH O 6 810 10 HOH HOH . P 5 HOH O 7 811 16 HOH HOH . P 5 HOH O 8 812 23 HOH HOH . P 5 HOH O 9 813 26 HOH HOH . P 5 HOH O 10 814 29 HOH HOH . P 5 HOH O 11 815 31 HOH HOH . P 5 HOH O 12 816 32 HOH HOH . P 5 HOH O 13 817 33 HOH HOH . P 5 HOH O 14 818 38 HOH HOH . P 5 HOH O 15 819 43 HOH HOH . P 5 HOH O 16 820 51 HOH HOH . P 5 HOH O 17 821 54 HOH HOH . P 5 HOH O 18 822 57 HOH HOH . P 5 HOH O 19 823 68 HOH HOH . P 5 HOH O 20 824 70 HOH HOH . P 5 HOH O 21 825 73 HOH HOH . P 5 HOH O 22 826 82 HOH HOH . P 5 HOH O 23 827 87 HOH HOH . P 5 HOH O 24 828 88 HOH HOH . P 5 HOH O 25 829 93 HOH HOH . P 5 HOH O 26 830 95 HOH HOH . P 5 HOH O 27 831 97 HOH HOH . P 5 HOH O 28 832 99 HOH HOH . P 5 HOH O 29 833 100 HOH HOH . P 5 HOH O 30 834 104 HOH HOH . P 5 HOH O 31 835 115 HOH HOH . P 5 HOH O 32 836 121 HOH HOH . P 5 HOH O 33 837 130 HOH HOH . P 5 HOH O 34 838 132 HOH HOH . P 5 HOH O 35 839 139 HOH HOH . P 5 HOH O 36 840 141 HOH HOH . P 5 HOH O 37 841 148 HOH HOH . P 5 HOH O 38 842 153 HOH HOH . P 5 HOH O 39 843 154 HOH HOH . P 5 HOH O 40 844 156 HOH HOH . P 5 HOH O 41 845 158 HOH HOH . P 5 HOH O 42 846 164 HOH HOH . P 5 HOH O 43 847 168 HOH HOH . P 5 HOH O 44 848 171 HOH HOH . P 5 HOH O 45 849 175 HOH HOH . P 5 HOH O 46 850 176 HOH HOH . P 5 HOH O 47 851 178 HOH HOH . P 5 HOH O 48 852 182 HOH HOH . P 5 HOH O 49 853 187 HOH HOH . P 5 HOH O 50 854 203 HOH HOH . P 5 HOH O 51 855 216 HOH HOH . P 5 HOH O 52 856 218 HOH HOH . P 5 HOH O 53 857 219 HOH HOH . P 5 HOH O 54 858 220 HOH HOH . P 5 HOH O 55 859 231 HOH HOH . P 5 HOH O 56 860 233 HOH HOH . P 5 HOH O 57 861 239 HOH HOH . P 5 HOH O 58 862 243 HOH HOH . P 5 HOH O 59 863 244 HOH HOH . P 5 HOH O 60 864 246 HOH HOH . P 5 HOH O 61 865 249 HOH HOH . P 5 HOH O 62 866 250 HOH HOH . P 5 HOH O 63 867 254 HOH HOH . Q 5 HOH P 1 704 13 HOH HOH . Q 5 HOH P 2 705 15 HOH HOH . Q 5 HOH P 3 706 19 HOH HOH . Q 5 HOH P 4 707 21 HOH HOH . Q 5 HOH P 5 708 24 HOH HOH . Q 5 HOH P 6 709 25 HOH HOH . Q 5 HOH P 7 710 34 HOH HOH . Q 5 HOH P 8 711 35 HOH HOH . Q 5 HOH P 9 712 36 HOH HOH . Q 5 HOH P 10 713 41 HOH HOH . Q 5 HOH P 11 714 42 HOH HOH . Q 5 HOH P 12 715 44 HOH HOH . Q 5 HOH P 13 716 45 HOH HOH . Q 5 HOH P 14 717 47 HOH HOH . Q 5 HOH P 15 718 48 HOH HOH . Q 5 HOH P 16 719 49 HOH HOH . Q 5 HOH P 17 720 55 HOH HOH . Q 5 HOH P 18 721 59 HOH HOH . Q 5 HOH P 19 722 61 HOH HOH . Q 5 HOH P 20 723 64 HOH HOH . Q 5 HOH P 21 724 71 HOH HOH . Q 5 HOH P 22 725 75 HOH HOH . Q 5 HOH P 23 726 80 HOH HOH . Q 5 HOH P 24 727 85 HOH HOH . Q 5 HOH P 25 728 86 HOH HOH . Q 5 HOH P 26 729 92 HOH HOH . Q 5 HOH P 27 730 107 HOH HOH . Q 5 HOH P 28 731 113 HOH HOH . Q 5 HOH P 29 732 118 HOH HOH . Q 5 HOH P 30 733 119 HOH HOH . Q 5 HOH P 31 734 120 HOH HOH . Q 5 HOH P 32 735 122 HOH HOH . Q 5 HOH P 33 736 128 HOH HOH . Q 5 HOH P 34 737 129 HOH HOH . Q 5 HOH P 35 738 133 HOH HOH . Q 5 HOH P 36 739 134 HOH HOH . Q 5 HOH P 37 740 135 HOH HOH . Q 5 HOH P 38 741 142 HOH HOH . Q 5 HOH P 39 742 143 HOH HOH . Q 5 HOH P 40 743 145 HOH HOH . Q 5 HOH P 41 744 161 HOH HOH . Q 5 HOH P 42 745 163 HOH HOH . Q 5 HOH P 43 746 165 HOH HOH . Q 5 HOH P 44 747 167 HOH HOH . Q 5 HOH P 45 748 174 HOH HOH . Q 5 HOH P 46 749 180 HOH HOH . Q 5 HOH P 47 750 185 HOH HOH . Q 5 HOH P 48 751 199 HOH HOH . Q 5 HOH P 49 752 201 HOH HOH . Q 5 HOH P 50 753 204 HOH HOH . Q 5 HOH P 51 754 205 HOH HOH . Q 5 HOH P 52 755 206 HOH HOH . Q 5 HOH P 53 756 207 HOH HOH . Q 5 HOH P 54 757 208 HOH HOH . Q 5 HOH P 55 758 209 HOH HOH . Q 5 HOH P 56 759 212 HOH HOH . Q 5 HOH P 57 760 213 HOH HOH . Q 5 HOH P 58 761 214 HOH HOH . Q 5 HOH P 59 762 217 HOH HOH . Q 5 HOH P 60 763 222 HOH HOH . Q 5 HOH P 61 764 229 HOH HOH . Q 5 HOH P 62 765 234 HOH HOH . Q 5 HOH P 63 766 237 HOH HOH . Q 5 HOH P 64 767 241 HOH HOH . Q 5 HOH P 65 768 247 HOH HOH . Q 5 HOH P 66 769 256 HOH HOH . Q 5 HOH P 67 770 257 HOH HOH . R 5 HOH Q 1 502 14 HOH HOH . R 5 HOH Q 2 503 18 HOH HOH . R 5 HOH Q 3 504 22 HOH HOH . R 5 HOH Q 4 505 28 HOH HOH . R 5 HOH Q 5 506 30 HOH HOH . R 5 HOH Q 6 507 40 HOH HOH . R 5 HOH Q 7 508 53 HOH HOH . R 5 HOH Q 8 509 69 HOH HOH . R 5 HOH Q 9 510 78 HOH HOH . R 5 HOH Q 10 511 84 HOH HOH . R 5 HOH Q 11 512 101 HOH HOH . R 5 HOH Q 12 513 102 HOH HOH . R 5 HOH Q 13 514 110 HOH HOH . R 5 HOH Q 14 515 123 HOH HOH . R 5 HOH Q 15 516 124 HOH HOH . R 5 HOH Q 16 517 125 HOH HOH . R 5 HOH Q 17 518 131 HOH HOH . R 5 HOH Q 18 519 137 HOH HOH . R 5 HOH Q 19 520 144 HOH HOH . R 5 HOH Q 20 521 146 HOH HOH . R 5 HOH Q 21 522 152 HOH HOH . R 5 HOH Q 22 523 155 HOH HOH . R 5 HOH Q 23 524 160 HOH HOH . R 5 HOH Q 24 525 162 HOH HOH . R 5 HOH Q 25 526 166 HOH HOH . R 5 HOH Q 26 527 169 HOH HOH . R 5 HOH Q 27 528 172 HOH HOH . R 5 HOH Q 28 529 177 HOH HOH . R 5 HOH Q 29 530 186 HOH HOH . R 5 HOH Q 30 531 189 HOH HOH . R 5 HOH Q 31 532 191 HOH HOH . R 5 HOH Q 32 533 193 HOH HOH . R 5 HOH Q 33 534 194 HOH HOH . R 5 HOH Q 34 535 195 HOH HOH . R 5 HOH Q 35 536 198 HOH HOH . R 5 HOH Q 36 537 200 HOH HOH . R 5 HOH Q 37 538 202 HOH HOH . R 5 HOH Q 38 539 210 HOH HOH . R 5 HOH Q 39 540 211 HOH HOH . R 5 HOH Q 40 541 223 HOH HOH . R 5 HOH Q 41 542 224 HOH HOH . R 5 HOH Q 42 543 225 HOH HOH . R 5 HOH Q 43 544 228 HOH HOH . R 5 HOH Q 44 545 230 HOH HOH . R 5 HOH Q 45 546 235 HOH HOH . R 5 HOH Q 46 547 236 HOH HOH . R 5 HOH Q 47 548 238 HOH HOH . R 5 HOH Q 48 549 242 HOH HOH . R 5 HOH Q 49 550 248 HOH HOH . R 5 HOH Q 50 551 251 HOH HOH . R 5 HOH Q 51 552 252 HOH HOH . R 5 HOH Q 52 553 253 HOH HOH . R 5 HOH Q 53 554 255 HOH HOH . S 5 HOH R 1 904 1 HOH HOH . S 5 HOH R 2 905 4 HOH HOH . S 5 HOH R 3 906 5 HOH HOH . S 5 HOH R 4 907 7 HOH HOH . S 5 HOH R 5 908 11 HOH HOH . S 5 HOH R 6 909 12 HOH HOH . S 5 HOH R 7 910 17 HOH HOH . S 5 HOH R 8 911 20 HOH HOH . S 5 HOH R 9 912 27 HOH HOH . S 5 HOH R 10 913 37 HOH HOH . S 5 HOH R 11 914 39 HOH HOH . S 5 HOH R 12 915 46 HOH HOH . S 5 HOH R 13 916 50 HOH HOH . S 5 HOH R 14 917 52 HOH HOH . S 5 HOH R 15 918 56 HOH HOH . S 5 HOH R 16 919 58 HOH HOH . S 5 HOH R 17 920 60 HOH HOH . S 5 HOH R 18 921 62 HOH HOH . S 5 HOH R 19 922 63 HOH HOH . S 5 HOH R 20 923 65 HOH HOH . S 5 HOH R 21 924 66 HOH HOH . S 5 HOH R 22 925 67 HOH HOH . S 5 HOH R 23 926 72 HOH HOH . S 5 HOH R 24 927 74 HOH HOH . S 5 HOH R 25 928 76 HOH HOH . S 5 HOH R 26 929 77 HOH HOH . S 5 HOH R 27 930 79 HOH HOH . S 5 HOH R 28 931 81 HOH HOH . S 5 HOH R 29 932 83 HOH HOH . S 5 HOH R 30 933 89 HOH HOH . S 5 HOH R 31 934 90 HOH HOH . S 5 HOH R 32 935 91 HOH HOH . S 5 HOH R 33 936 94 HOH HOH . S 5 HOH R 34 937 96 HOH HOH . S 5 HOH R 35 938 98 HOH HOH . S 5 HOH R 36 939 103 HOH HOH . S 5 HOH R 37 940 105 HOH HOH . S 5 HOH R 38 941 106 HOH HOH . S 5 HOH R 39 942 108 HOH HOH . S 5 HOH R 40 943 109 HOH HOH . S 5 HOH R 41 944 111 HOH HOH . S 5 HOH R 42 945 112 HOH HOH . S 5 HOH R 43 946 114 HOH HOH . S 5 HOH R 44 947 116 HOH HOH . S 5 HOH R 45 948 117 HOH HOH . S 5 HOH R 46 949 126 HOH HOH . S 5 HOH R 47 950 127 HOH HOH . S 5 HOH R 48 951 136 HOH HOH . S 5 HOH R 49 952 138 HOH HOH . S 5 HOH R 50 953 140 HOH HOH . S 5 HOH R 51 954 147 HOH HOH . S 5 HOH R 52 955 149 HOH HOH . S 5 HOH R 53 956 150 HOH HOH . S 5 HOH R 54 957 151 HOH HOH . S 5 HOH R 55 958 157 HOH HOH . S 5 HOH R 56 959 159 HOH HOH . S 5 HOH R 57 960 170 HOH HOH . S 5 HOH R 58 961 173 HOH HOH . S 5 HOH R 59 962 179 HOH HOH . S 5 HOH R 60 963 181 HOH HOH . S 5 HOH R 61 964 183 HOH HOH . S 5 HOH R 62 965 184 HOH HOH . S 5 HOH R 63 966 188 HOH HOH . S 5 HOH R 64 967 190 HOH HOH . S 5 HOH R 65 968 192 HOH HOH . S 5 HOH R 66 969 196 HOH HOH . S 5 HOH R 67 970 197 HOH HOH . S 5 HOH R 68 971 215 HOH HOH . S 5 HOH R 69 972 221 HOH HOH . S 5 HOH R 70 973 226 HOH HOH . S 5 HOH R 71 974 227 HOH HOH . S 5 HOH R 72 975 232 HOH HOH . S 5 HOH R 73 976 240 HOH HOH . S 5 HOH R 74 977 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 35.281 6.583 11.772 1 74.23 ? C1 GOL 804 O 1 HETATM 2 O O1 GOL . . . G 4 35.134 7.533 12.807 1 72.01 ? O1 GOL 804 O 1 HETATM 3 C C2 GOL . . . G 4 36.665 6.674 11.123 1 75.58 ? C2 GOL 804 O 1 HETATM 4 O O2 GOL . . . G 4 36.636 7.578 10.035 1 73.51 ? O2 GOL 804 O 1 HETATM 5 C C3 GOL . . . G 4 37.103 5.302 10.614 1 76.72 ? C3 GOL 804 O 1 HETATM 6 O O3 GOL . . . G 4 37.787 4.602 11.629 1 78.28 ? O3 GOL 804 O 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #