data_2B52 # _model_server_result.job_id KbuDI5eOnKPzNxqQu-VNbw _model_server_result.datetime_utc '2025-03-13 17:42:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 2B52 # _exptl.entry_id 2B52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.518 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-(2,4-DIMETHYLTHIAZOL-5-YL)-4-OXO-2,4-DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)-3-(4-METHYLPIPERAZIN-1-YL)UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B52 _cell.length_a 72.03 _cell.length_b 72.01 _cell.length_c 53.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 N7 O2 S' _chem_comp.formula_weight 437.518 _chem_comp.id D42 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-(2,4-DIMETHYLTHIAZOL-5-YL)-4-OXO-2,4-DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)-3-(4-METHYLPIPERAZIN-1-YL)UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DPH-042562 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D42 sing 83 n n C1 N6 D42 sing 84 n n C1 H11 D42 sing 85 n n C1 H12 D42 sing 86 n n C2 N3 D42 sing 87 n n C2 H21A D42 sing 88 n n C2 H22 D42 sing 89 n n N3 C4 D42 sing 90 n n N3 N19 D42 sing 91 n n C4 C5 D42 sing 92 n n C4 H41 D42 sing 93 n n C4 H42 D42 sing 94 n n C5 N6 D42 sing 95 n n C5 H51 D42 sing 96 n n C5 H52 D42 sing 97 n n N6 C15 D42 sing 98 n n C15 H151 D42 sing 99 n n C15 H152 D42 sing 100 n n C15 H153 D42 sing 101 n n N19 C20 D42 sing 102 n n N19 H19 D42 sing 103 n n C20 N21 D42 sing 104 n n C20 O47 D42 doub 105 n n N21 C22 D42 sing 106 n n N21 H21 D42 sing 107 n n C22 C23 D42 doub 108 n y C22 C27 D42 sing 109 n y C23 C24 D42 sing 110 n y C23 H23 D42 sing 111 n n C24 C25 D42 doub 112 n y C24 H24 D42 sing 113 n n C25 C26 D42 sing 114 n y C25 H25 D42 sing 115 n n C26 C27 D42 doub 116 n y C26 C31 D42 sing 117 n y C27 C33 D42 sing 118 n n C31 C32 D42 sing 119 n y C31 N34 D42 doub 120 n y C32 C33 D42 sing 121 n n C32 C36 D42 doub 122 n y C33 O50 D42 doub 123 n n N34 N35 D42 sing 124 n y N35 C36 D42 sing 125 n y N35 H35 D42 sing 126 n n C36 C37 D42 sing 127 n y C37 S38 D42 sing 128 n y C37 C41 D42 doub 129 n y S38 C39 D42 sing 130 n y C39 N40 D42 doub 131 n y C39 C46 D42 sing 132 n n N40 C41 D42 sing 133 n y C41 C42 D42 sing 134 n n C42 H421 D42 sing 135 n n C42 H422 D42 sing 136 n n C42 H423 D42 sing 137 n n C46 H461 D42 sing 138 n n C46 H462 D42 sing 139 n n C46 H463 D42 sing 140 n n # _atom_sites.entry_id 2B52 _atom_sites.fract_transf_matrix[1][1] 0.013883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D42 A 1 299 1 D42 LIG . C 3 HOH A 1 300 1 HOH HOH . C 3 HOH A 2 301 2 HOH HOH . C 3 HOH A 3 302 3 HOH HOH . C 3 HOH A 4 303 4 HOH HOH . C 3 HOH A 5 304 5 HOH HOH . C 3 HOH A 6 305 6 HOH HOH . C 3 HOH A 7 306 7 HOH HOH . C 3 HOH A 8 307 8 HOH HOH . C 3 HOH A 9 308 9 HOH HOH . C 3 HOH A 10 309 10 HOH HOH . C 3 HOH A 11 310 11 HOH HOH . C 3 HOH A 12 311 12 HOH HOH . C 3 HOH A 13 312 13 HOH HOH . C 3 HOH A 14 313 14 HOH HOH . C 3 HOH A 15 314 15 HOH HOH . C 3 HOH A 16 315 16 HOH HOH . C 3 HOH A 17 316 17 HOH HOH . C 3 HOH A 18 317 18 HOH HOH . C 3 HOH A 19 318 19 HOH HOH . C 3 HOH A 20 319 20 HOH HOH . C 3 HOH A 21 320 21 HOH HOH . C 3 HOH A 22 321 22 HOH HOH . C 3 HOH A 23 322 23 HOH HOH . C 3 HOH A 24 323 24 HOH HOH . C 3 HOH A 25 324 25 HOH HOH . C 3 HOH A 26 325 26 HOH HOH . C 3 HOH A 27 326 27 HOH HOH . C 3 HOH A 28 327 28 HOH HOH . C 3 HOH A 29 328 29 HOH HOH . C 3 HOH A 30 329 30 HOH HOH . C 3 HOH A 31 330 31 HOH HOH . C 3 HOH A 32 331 32 HOH HOH . C 3 HOH A 33 332 33 HOH HOH . C 3 HOH A 34 333 34 HOH HOH . C 3 HOH A 35 334 35 HOH HOH . C 3 HOH A 36 335 36 HOH HOH . C 3 HOH A 37 336 37 HOH HOH . C 3 HOH A 38 337 38 HOH HOH . C 3 HOH A 39 338 39 HOH HOH . C 3 HOH A 40 339 40 HOH HOH . C 3 HOH A 41 340 41 HOH HOH . C 3 HOH A 42 341 42 HOH HOH . C 3 HOH A 43 342 43 HOH HOH . C 3 HOH A 44 343 44 HOH HOH . C 3 HOH A 45 344 45 HOH HOH . C 3 HOH A 46 345 46 HOH HOH . C 3 HOH A 47 346 47 HOH HOH . C 3 HOH A 48 347 48 HOH HOH . C 3 HOH A 49 348 49 HOH HOH . C 3 HOH A 50 349 50 HOH HOH . C 3 HOH A 51 350 51 HOH HOH . C 3 HOH A 52 351 52 HOH HOH . C 3 HOH A 53 352 53 HOH HOH . C 3 HOH A 54 353 54 HOH HOH . C 3 HOH A 55 354 55 HOH HOH . C 3 HOH A 56 355 56 HOH HOH . C 3 HOH A 57 356 57 HOH HOH . C 3 HOH A 58 357 58 HOH HOH . C 3 HOH A 59 358 59 HOH HOH . C 3 HOH A 60 359 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D42 . . . B 2 75.619 64.732 14.806 1 55.27 ? C1 D42 299 A 1 HETATM 2 C C2 D42 . . . B 2 76.304 63.415 15.133 1 55.39 ? C2 D42 299 A 1 HETATM 3 N N3 D42 . . . B 2 77.772 63.574 15.249 1 53.14 ? N3 D42 299 A 1 HETATM 4 C C4 D42 . . . B 2 78.391 64.157 14.039 1 53.44 ? C4 D42 299 A 1 HETATM 5 C C5 D42 . . . B 2 77.706 65.464 13.624 1 55.1 ? C5 D42 299 A 1 HETATM 6 N N6 D42 . . . B 2 76.22 65.362 13.607 1 56.76 ? N6 D42 299 A 1 HETATM 7 C C15 D42 . . . B 2 75.437 66.504 13.131 1 55.57 ? C15 D42 299 A 1 HETATM 8 N N19 D42 . . . B 2 78.426 62.635 16.235 1 52.7 ? N19 D42 299 A 1 HETATM 9 C C20 D42 . . . B 2 78.665 61.339 16.007 1 50.03 ? C20 D42 299 A 1 HETATM 10 N N21 D42 . . . B 2 79.494 60.999 15.019 1 47.73 ? N21 D42 299 A 1 HETATM 11 C C22 D42 . . . B 2 80.079 59.727 14.795 1 45.65 ? C22 D42 299 A 1 HETATM 12 C C23 D42 . . . B 2 79.803 58.5 15.577 1 43.92 ? C23 D42 299 A 1 HETATM 13 C C24 D42 . . . B 2 80.527 57.271 15.203 1 43.46 ? C24 D42 299 A 1 HETATM 14 C C25 D42 . . . B 2 81.499 57.274 14.091 1 42.03 ? C25 D42 299 A 1 HETATM 15 C C26 D42 . . . B 2 81.749 58.508 13.34 1 43.24 ? C26 D42 299 A 1 HETATM 16 C C27 D42 . . . B 2 81.038 59.746 13.675 1 45.24 ? C27 D42 299 A 1 HETATM 17 C C31 D42 . . . B 2 82.544 58.835 12.175 1 44.19 ? C31 D42 299 A 1 HETATM 18 C C32 D42 . . . B 2 82.316 60.216 11.807 1 44.88 ? C32 D42 299 A 1 HETATM 19 C C33 D42 . . . B 2 81.372 60.813 12.742 1 44.39 ? C33 D42 299 A 1 HETATM 20 N N34 D42 . . . B 2 83.4 58.154 11.283 1 44.24 ? N34 D42 299 A 1 HETATM 21 N N35 D42 . . . B 2 83.704 59.264 10.296 1 44.83 ? N35 D42 299 A 1 HETATM 22 C C36 D42 . . . B 2 83.055 60.484 10.585 1 46.64 ? C36 D42 299 A 1 HETATM 23 C C37 D42 . . . B 2 83.083 61.58 9.625 1 50.21 ? C37 D42 299 A 1 HETATM 24 S S38 D42 . . . B 2 81.696 62.739 9.452 1 56.58 ? S38 D42 299 A 1 HETATM 25 C C39 D42 . . . B 2 82.548 63.592 8.086 1 55.12 ? C39 D42 299 A 1 HETATM 26 N N40 D42 . . . B 2 83.81 63.01 7.798 1 53.38 ? N40 D42 299 A 1 HETATM 27 C C41 D42 . . . B 2 84.107 61.905 8.634 1 50.41 ? C41 D42 299 A 1 HETATM 28 C C42 D42 . . . B 2 85.403 61.188 8.399 1 47.24 ? C42 D42 299 A 1 HETATM 29 C C46 D42 . . . B 2 81.975 64.782 7.328 1 56.21 ? C46 D42 299 A 1 HETATM 30 O O47 D42 . . . B 2 78.133 60.471 16.709 1 48.43 ? O47 D42 299 A 1 HETATM 31 O O50 D42 . . . B 2 80.854 61.931 12.739 1 44.73 ? O50 D42 299 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #